Wall clock time and date at job start Tue Mar 31 2020 07:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47310 * 2 1 4 4 C 1.53001 * 109.47090 * 239.99951 * 2 1 3 5 5 N 1.46505 * 109.46945 * 64.99868 * 4 2 1 6 6 C 1.36935 * 119.99853 * 179.72451 * 5 4 2 7 7 H 1.07997 * 120.00090 * 0.27774 * 6 5 4 8 8 C 1.38816 * 119.99932 * 180.27810 * 6 5 4 9 9 N 1.31611 * 120.00095 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99915 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47145 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47178 * 119.99916 * 10 8 6 13 13 H 1.48498 * 109.47366 * 240.00015 * 10 8 6 14 14 C 1.52998 * 109.47434 * 119.99871 * 2 1 3 15 15 N 1.46499 * 109.47389 * 295.00337 * 14 2 1 16 16 C 1.34774 * 120.00156 * 179.97438 * 15 14 2 17 17 O 1.21276 * 119.99950 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00060 * 179.97438 * 16 15 14 19 19 N 1.46896 * 109.47268 * 173.72932 * 18 16 15 20 20 C 1.46850 * 110.99927 * 169.40049 * 19 18 16 21 21 C 1.53042 * 109.52260 * 185.83962 * 20 19 18 22 22 C 1.53111 * 109.28052 * 300.82320 * 21 20 19 23 23 C 1.52998 * 109.57730 * 177.59000 * 22 21 20 24 24 C 1.53124 * 109.16063 * 57.65078 * 22 21 20 25 25 C 1.46849 * 111.00274 * 293.61250 * 19 18 16 26 26 H 1.09008 * 109.47112 * 300.00082 * 1 2 3 27 27 H 1.09003 * 109.47393 * 59.99656 * 1 2 3 28 28 H 1.08998 * 109.46912 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46911 * 305.00145 * 4 2 1 30 30 H 1.09002 * 109.47434 * 184.99882 * 4 2 1 31 31 H 0.96999 * 119.99728 * 0.02562 * 5 4 2 32 32 H 0.96997 * 120.00503 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46622 * 54.99848 * 14 2 1 34 34 H 1.09004 * 109.47548 * 174.99784 * 14 2 1 35 35 H 0.97005 * 119.99690 * 359.97438 * 15 14 2 36 36 H 1.09001 * 109.47287 * 293.73982 * 18 16 15 37 37 H 1.09010 * 109.47206 * 53.73105 * 18 16 15 38 38 H 1.08997 * 109.46447 * 305.85896 * 20 19 18 39 39 H 1.08998 * 109.46028 * 65.82494 * 20 19 18 40 40 H 1.09002 * 109.50076 * 180.88194 * 21 20 19 41 41 H 1.09008 * 109.49978 * 60.76364 * 21 20 19 42 42 H 1.09004 * 109.52523 * 297.75056 * 22 21 20 43 43 H 1.08999 * 109.47007 * 300.28367 * 23 22 21 44 44 H 1.08993 * 109.47071 * 60.28336 * 23 22 21 45 45 H 1.09001 * 109.47147 * 180.28697 * 23 22 21 46 46 H 1.09007 * 109.50397 * 182.40186 * 24 22 21 47 47 H 1.09005 * 109.53588 * 62.31095 * 24 22 21 48 48 H 1.08995 * 109.46059 * 294.17576 * 25 19 18 49 49 H 1.08997 * 109.46093 * 54.15424 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6523 0.0354 -2.4424 6 6 2.0063 -0.4176 -3.6853 7 1 2.5672 -1.3349 -3.7862 8 6 1.6440 0.3024 -4.8155 9 7 0.9599 1.4200 -4.6925 10 14 2.1261 -0.3159 -6.5110 11 1 2.8850 -1.5854 -6.3776 12 1 0.9022 -0.5526 -7.3181 13 1 2.9749 0.6991 -7.1851 14 6 2.0400 -0.7212 1.2492 15 7 1.6525 0.0353 2.4424 16 6 1.9957 -0.4136 3.6659 17 8 2.6249 -1.4441 3.7792 18 6 1.5975 0.3649 4.8933 19 7 1.9536 -0.4004 6.0955 20 6 1.8145 0.4228 7.3037 21 6 2.3303 -0.3565 8.5156 22 6 1.5275 -1.6519 8.6628 23 6 2.0770 -2.4651 9.8365 24 6 1.6496 -2.4681 7.3730 25 6 1.1535 -1.6278 6.1943 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6053 -1.7197 -1.2951 30 1 3.1263 -0.7995 -1.2057 31 1 1.1488 0.8594 -2.3517 32 1 0.7064 1.9229 -5.4823 33 1 1.6054 -1.7197 1.2951 34 1 3.1264 -0.7995 1.2056 35 1 1.1488 0.8594 2.3517 36 1 2.1208 1.3210 4.9028 37 1 0.5216 0.5399 4.8794 38 1 2.3936 1.3389 7.1876 39 1 0.7644 0.6737 7.4533 40 1 2.2125 0.2488 9.4144 41 1 3.3842 -0.5958 8.3727 42 1 0.4797 -1.4124 8.8444 43 1 3.1253 -2.7022 9.6550 44 1 1.9896 -1.8833 10.7540 45 1 1.5075 -3.3891 9.9366 46 1 1.0454 -3.3717 7.4556 47 1 2.6925 -2.7413 7.2119 48 1 0.1065 -1.3673 6.3491 49 1 1.2526 -2.2010 5.2725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753636396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:36 Heat of formation + Delta-G solvation = -43.331952 kcal Electronic energy + Delta-G solvation = -24019.799613 eV Core-core repulsion = 20595.122953 eV Total energy + Delta-G solvation = -3424.676660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17710 -38.82262 -36.80196 -34.80000 -34.31079 -32.49559 -31.10508 -30.23661 -29.43013 -26.94058 -25.94007 -24.74926 -23.46611 -22.53220 -21.96898 -20.53848 -19.94609 -19.75442 -17.36843 -16.79054 -16.50481 -15.88518 -15.55424 -15.06377 -14.76167 -14.66120 -14.50654 -14.28387 -14.18207 -13.62645 -13.39478 -13.21396 -12.99772 -12.71949 -12.66518 -12.42014 -12.24384 -12.11557 -12.01563 -11.75429 -11.45765 -11.06349 -10.98832 -10.91931 -10.71533 -10.61688 -10.56237 -10.54590 -10.39697 -10.03130 -9.76642 -9.62923 -8.98482 -8.88269 -8.55287 -6.92336 -5.77445 -3.05660 2.65406 3.00405 3.43458 3.49452 3.51541 3.73847 4.43826 4.48256 4.51082 4.59233 4.67554 4.91252 4.97264 4.99591 5.07925 5.11417 5.17277 5.22253 5.24556 5.34189 5.36172 5.39149 5.42782 5.55702 5.57829 5.67603 5.74621 5.81889 5.82867 5.90206 5.93939 5.96403 6.01350 6.11314 6.16668 6.24821 6.39198 6.51763 6.64783 6.70002 6.77605 6.82769 6.87187 7.53664 7.71112 8.26967 8.41758 9.53137 10.10514 10.45336 11.45662 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.051275 B = 0.002037 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.946380 B =13740.289115 C =13956.448825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.129 3.871 15 N -0.728 5.728 16 C 0.509 3.491 17 O -0.523 6.523 18 C 0.036 3.964 19 N -0.519 5.519 20 C 0.056 3.944 21 C -0.110 4.110 22 C -0.096 4.096 23 C -0.146 4.146 24 C -0.109 4.109 25 C 0.053 3.947 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.399 0.601 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.026 0.974 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 -1.652 28.927 29.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.005 3.995 15 N -0.381 5.381 16 C 0.294 3.706 17 O -0.399 6.399 18 C -0.095 4.095 19 N -0.244 5.244 20 C -0.072 4.072 21 C -0.148 4.148 22 C -0.114 4.114 23 C -0.203 4.203 24 C -0.146 4.146 25 C -0.075 4.075 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.233 0.767 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.045 0.955 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.489 -2.669 28.835 28.963 hybrid contribution -1.063 0.749 -1.034 1.662 sum -1.552 -1.921 27.801 27.910 Atomic orbital electron populations 1.21787 0.94730 1.01883 1.01426 1.21548 0.96645 1.00496 0.94237 0.90562 1.20581 0.96627 0.94210 0.85391 1.42348 1.66804 1.27775 1.00623 1.19295 1.28544 1.05372 0.83688 0.91079 1.24737 1.01080 0.97408 0.97880 1.69660 1.43711 1.16588 1.28380 0.86106 0.77598 0.77834 0.84604 1.20533 1.21888 1.21888 1.21382 1.00103 0.95156 0.82874 1.46080 1.58043 1.28007 1.05966 1.20451 0.79797 0.86020 0.84294 1.90695 1.38764 1.24042 1.86366 1.21963 1.00236 0.97643 0.89700 1.61556 1.56434 1.05745 1.00701 1.22119 0.99176 0.96088 0.89791 1.21634 1.00814 0.95862 0.96501 1.21210 0.99440 0.95518 0.95266 1.21803 1.01274 0.99724 0.97497 1.21609 1.02602 0.97420 0.93014 1.22209 0.93411 0.91361 1.00487 0.93960 0.91185 0.92868 0.96008 0.96110 0.78226 0.93595 0.91497 0.91405 0.76688 0.87773 0.92190 0.90615 0.94949 0.91567 0.90859 0.91734 0.92505 0.92867 0.92765 0.91689 0.90772 0.95536 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.94 37.16 0.33 -1.72 16 2 C -0.11 -1.68 2.46 -90.62 -0.22 -1.90 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 5 N -0.73 -18.31 5.33 -59.91 -0.32 -18.63 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 10 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C 0.13 1.76 5.06 -4.04 -0.02 1.74 16 15 N -0.73 -8.25 5.28 -60.30 -0.32 -8.56 16 16 C 0.51 6.29 7.36 -10.99 -0.08 6.21 16 17 O -0.52 -8.55 14.71 5.56 0.08 -8.47 16 18 C 0.04 0.32 5.45 -4.98 -0.03 0.30 16 19 N -0.52 -5.20 4.35 -236.11 -1.03 -6.22 16 20 C 0.06 0.43 5.46 -3.83 -0.02 0.41 16 21 C -0.11 -0.79 5.38 -26.65 -0.14 -0.93 16 22 C -0.10 -0.69 2.79 -90.50 -0.25 -0.94 16 23 C -0.15 -0.91 9.21 37.16 0.34 -0.57 16 24 C -0.11 -0.96 5.38 -26.65 -0.14 -1.10 16 25 C 0.05 0.54 5.12 -3.84 -0.02 0.52 16 26 H 0.04 0.49 7.18 -51.92 -0.37 0.12 16 27 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.38 9.97 6.85 -40.82 -0.28 9.69 16 32 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 3.56 7.66 -40.82 -0.31 3.25 16 36 H 0.10 0.76 7.98 -51.93 -0.41 0.35 16 37 H 0.06 0.44 8.12 -51.92 -0.42 0.02 16 38 H 0.08 0.51 8.01 -51.93 -0.42 0.10 16 39 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 49 H 0.09 1.12 6.06 -51.93 -0.31 0.80 16 LS Contribution 382.78 15.07 5.77 5.77 Total: -1.00 -32.51 382.78 -9.85 -42.37 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -9.21 Total: 5.89 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -0.53 Total: -2.20 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.94 Total: -60.83 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.08 Total: -8.47 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.51 -9.85 -42.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753636396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.965 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds