Wall clock time and date at job start Tue Mar 31 2020 07:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00042 * 2 1 4 4 C 1.46898 * 111.00025 * 123.95776 * 2 1 3 5 5 C 1.52999 * 109.47079 * 169.99649 * 4 2 1 6 6 C 1.53004 * 109.47224 * 180.02562 * 5 4 2 7 7 C 1.50694 * 109.47059 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00546 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99845 * 180.27265 * 7 6 5 10 10 C 1.46504 * 120.00009 * 179.72581 * 9 7 6 11 11 C 1.53001 * 109.47170 * 175.13263 * 10 9 7 12 12 N 1.46505 * 110.01433 * 303.89912 * 11 10 9 13 13 C 1.36928 * 120.00390 * 301.46337 * 12 11 10 14 14 H 1.08008 * 119.99728 * 354.60669 * 13 12 11 15 15 C 1.38817 * 120.00437 * 174.60297 * 13 12 11 16 16 N 1.31617 * 119.99672 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00144 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47219 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46854 * 120.00187 * 17 15 13 20 20 H 1.48499 * 109.47155 * 240.00260 * 17 15 13 21 21 C 1.54261 * 110.03219 * 182.46161 * 11 10 9 22 22 C 1.54892 * 104.19481 * 217.10381 * 21 11 10 23 23 C 1.54887 * 102.74885 * 37.93904 * 22 21 11 24 24 C 1.53873 * 110.03439 * 65.29002 * 11 10 9 25 25 H 1.08996 * 109.46813 * 296.04307 * 1 2 3 26 26 H 1.09002 * 109.47206 * 56.04393 * 1 2 3 27 27 H 1.09003 * 109.47249 * 176.03673 * 1 2 3 28 28 H 1.08999 * 109.46883 * 183.95325 * 3 2 1 29 29 H 1.08995 * 109.47280 * 303.95826 * 3 2 1 30 30 H 1.08998 * 109.46772 * 63.95887 * 3 2 1 31 31 H 1.09000 * 109.46898 * 50.00165 * 4 2 1 32 32 H 1.08996 * 109.47274 * 289.99933 * 4 2 1 33 33 H 1.09005 * 109.47052 * 60.00067 * 5 4 2 34 34 H 1.09002 * 109.47503 * 300.00650 * 5 4 2 35 35 H 1.08991 * 109.47012 * 60.00242 * 6 5 4 36 36 H 1.09005 * 109.46618 * 300.00254 * 6 5 4 37 37 H 0.96994 * 120.00340 * 359.72953 * 9 7 6 38 38 H 1.09004 * 109.46877 * 295.12806 * 10 9 7 39 39 H 1.09001 * 109.47165 * 55.12830 * 10 9 7 40 40 H 0.97003 * 119.99493 * 121.46113 * 12 11 10 41 41 H 0.96995 * 119.99743 * 179.97438 * 16 15 13 42 42 H 1.08993 * 110.48835 * 335.77930 * 21 11 10 43 43 H 1.09005 * 110.49054 * 98.42877 * 21 11 10 44 44 H 1.09000 * 110.75559 * 279.62556 * 22 21 11 45 45 H 1.08996 * 110.75675 * 156.26000 * 22 21 11 46 46 H 1.08999 * 110.48639 * 203.37990 * 23 22 21 47 47 H 1.09001 * 110.48243 * 80.73632 * 23 22 21 48 48 H 1.09000 * 110.03615 * 238.57024 * 24 11 10 49 49 H 1.08999 * 110.03078 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9555 0.9702 6 6 4.0527 -1.7539 2.1547 7 6 5.5390 -1.9399 1.9901 8 8 6.1044 -1.4788 1.0212 9 7 6.2393 -2.6229 2.9172 10 6 7.6834 -2.8089 2.7543 11 6 8.2509 -3.5054 3.9927 12 7 7.9208 -2.7369 5.1956 13 6 8.3308 -1.4355 5.3107 14 1 8.9705 -1.0022 4.5560 15 6 7.9242 -0.6731 6.3971 16 7 7.1450 -1.2013 7.3170 17 14 8.4841 1.1021 6.5544 18 1 9.3478 1.4529 5.3985 19 1 7.2979 1.9953 6.5745 20 1 9.2513 1.2693 7.8148 21 6 9.7808 -3.6525 3.8618 22 6 10.0856 -5.0318 4.4972 23 6 8.8833 -5.8931 4.0372 24 6 7.6802 -4.9300 4.1043 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0710 28 1 3.0828 1.3432 -0.0708 29 1 1.5898 1.9164 -0.8523 30 1 1.7044 1.8723 0.9233 31 1 1.5090 -1.7407 1.1754 32 1 1.7975 -0.2249 2.0627 33 1 3.9909 0.0192 0.9322 34 1 3.7024 -1.4966 0.0449 35 1 3.5662 -2.7285 2.1922 36 1 3.8547 -1.2130 3.0801 37 1 5.7874 -2.9914 3.6923 38 1 7.8736 -3.4222 1.8734 39 1 8.1632 -1.8379 2.6315 40 1 7.4117 -3.1501 5.9105 41 1 6.8612 -0.6687 8.0763 42 1 10.0767 -3.6420 2.8128 43 1 10.2888 -2.8592 4.4103 44 1 10.1146 -4.9583 5.5844 45 1 11.0211 -5.4366 4.1113 46 1 8.7362 -6.7350 4.7137 47 1 9.0342 -6.2445 3.0165 48 1 7.1584 -5.0500 5.0538 49 1 6.9993 -5.1254 3.2759 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:52 Heat of formation + Delta-G solvation = -41.022139 kcal Electronic energy + Delta-G solvation = -24958.612744 eV Core-core repulsion = 21534.036246 eV Total energy + Delta-G solvation = -3424.576499 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.45173 -38.26336 -37.57558 -34.04128 -33.27520 -33.09103 -30.64527 -28.39909 -28.21352 -27.72411 -27.00984 -24.52555 -23.39345 -22.66248 -20.85491 -20.37837 -19.54872 -18.54729 -17.01179 -16.69489 -15.98837 -15.71676 -15.49563 -14.96118 -14.89119 -14.73557 -14.55738 -14.05671 -13.71583 -13.33754 -13.24352 -12.78631 -12.60061 -12.52462 -12.29626 -12.04814 -11.85643 -11.58350 -11.47682 -11.41644 -11.20737 -11.07940 -10.79537 -10.73091 -10.64034 -10.53477 -10.50423 -10.22791 -10.14115 -9.84486 -9.65558 -9.33534 -8.91796 -8.50606 -8.34865 -7.01844 -5.82206 -3.10717 3.18618 3.40027 3.47932 3.49030 3.65276 3.98551 4.55796 4.87203 4.97820 5.05005 5.11478 5.12590 5.17206 5.23453 5.24383 5.36389 5.44610 5.53109 5.55088 5.62590 5.65144 5.65850 5.69226 5.77371 5.80588 5.88747 5.94297 5.95335 6.08864 6.18473 6.22964 6.26838 6.31144 6.40516 6.45199 6.56946 6.62727 6.77385 6.83223 6.87323 6.90528 7.01968 7.16045 7.70547 8.15394 8.36652 8.81229 9.48630 10.02704 10.38130 11.39988 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.004002 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.750915 B = 6994.082474 C = 8560.387653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.019 3.981 4 C 0.053 3.947 5 C -0.098 4.098 6 C -0.140 4.140 7 C 0.510 3.490 8 O -0.559 6.559 9 N -0.701 5.701 10 C 0.120 3.880 11 C 0.189 3.811 12 N -0.711 5.711 13 C -0.230 4.230 14 H 0.070 0.930 15 C -0.009 4.009 16 N -0.932 5.932 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.293 1.293 20 H -0.292 1.292 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.126 4.126 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.384 0.616 41 H 0.253 0.747 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.305 -4.993 -9.930 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.129 4.129 4 C -0.075 4.075 5 C -0.136 4.136 6 C -0.181 4.181 7 C 0.296 3.704 8 O -0.438 6.438 9 N -0.351 5.351 10 C -0.006 4.006 11 C 0.097 3.903 12 N -0.352 5.352 13 C -0.361 4.361 14 H 0.088 0.912 15 C -0.205 4.205 16 N -0.580 5.580 17 Si 0.731 3.269 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.172 4.172 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.164 4.164 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.236 0.764 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.218 0.782 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.688 -4.716 -11.050 14.263 hybrid contribution -0.385 1.247 1.670 2.120 sum -8.073 -3.468 -9.379 12.852 Atomic orbital electron populations 1.22377 0.87555 1.02134 1.00341 1.61963 1.07575 1.14181 1.43507 1.22463 1.01654 0.88541 1.00225 1.22201 0.96075 0.98070 0.91129 1.21293 0.93106 1.01203 0.98044 1.21596 0.93146 1.02352 1.00975 1.20491 0.89331 0.77906 0.82710 1.90650 1.72015 1.49855 1.31274 1.45750 1.09275 1.55198 1.24834 1.21845 0.80270 1.00898 0.97590 1.20464 0.92696 0.89658 0.87530 1.42554 1.65629 1.10830 1.16223 1.19139 1.23664 0.87720 1.05557 0.91236 1.24671 1.00134 0.97935 0.97779 1.69656 1.39505 1.35962 1.12915 0.86221 0.77806 0.85474 0.77368 1.20555 1.22010 1.21959 1.22827 0.97694 0.97419 0.99287 1.22386 0.96693 0.95572 1.00814 1.22303 0.95634 0.97576 1.00329 1.22428 0.97633 0.94616 1.01686 0.95765 0.91511 0.91413 0.90609 0.91613 0.95635 0.90772 0.94664 0.91167 0.90526 0.89350 0.88970 0.76404 0.93309 0.91635 0.78150 0.93676 0.92928 0.90331 0.91423 0.92741 0.92380 0.92293 0.91327 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.57 60.06 0.57 0.79 16 2 N -0.55 -6.13 5.02 -251.27 -1.26 -7.39 16 3 C 0.02 0.20 9.32 60.07 0.56 0.76 16 4 C 0.05 0.59 4.96 -3.83 -0.02 0.57 16 5 C -0.10 -1.29 4.43 -26.73 -0.12 -1.41 16 6 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 7 C 0.51 8.99 7.83 -10.99 -0.09 8.91 16 8 O -0.56 -11.76 15.98 5.55 0.09 -11.67 16 9 N -0.70 -12.28 5.10 -60.29 -0.31 -12.59 16 10 C 0.12 2.23 3.99 -4.04 -0.02 2.21 16 11 C 0.19 3.40 0.68 -130.70 -0.09 3.31 16 12 N -0.71 -15.85 4.76 -46.20 -0.22 -16.07 16 13 C -0.23 -5.91 8.39 -15.06 -0.13 -6.04 16 14 H 0.07 1.82 7.23 -52.48 -0.38 1.44 16 15 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 16 N -0.93 -26.56 13.06 55.49 0.73 -25.83 16 17 Si 0.90 22.12 29.55 -169.99 -5.02 17.09 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 C -0.13 -2.28 5.94 -25.07 -0.15 -2.42 16 22 C -0.12 -1.75 6.91 -24.74 -0.17 -1.92 16 23 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 24 C -0.13 -1.90 5.80 -25.62 -0.15 -2.04 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 27 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 28 H 0.08 0.86 6.47 -51.93 -0.34 0.53 16 29 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 32 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.07 1.03 6.51 -51.93 -0.34 0.69 16 34 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.40 6.69 7.99 -40.82 -0.33 6.36 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.41 7.49 -51.93 -0.39 1.03 16 40 H 0.38 9.16 7.28 -40.82 -0.30 8.86 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 43 H 0.08 1.55 7.12 -51.93 -0.37 1.18 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.07 1.07 7.44 -51.93 -0.39 0.69 16 49 H 0.06 0.85 7.55 -51.93 -0.39 0.46 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -30.02 383.80 -9.52 -39.54 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -9.09 Total: 12.60 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -0.21 Total: -1.47 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -1.06 Total: -61.88 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.02 -9.52 -39.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.485 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds