Wall clock time and date at job start Tue Mar 31 2020 07:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48500 * 109.47284 * 240.00092 * 3 2 1 5 5 H 1.48499 * 109.47122 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47184 * 119.99955 * 3 2 1 7 7 C 1.38799 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00111 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00342 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47213 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99990 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99651 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99664 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47014 * 179.97438 * 14 13 11 16 16 N 1.29029 * 124.91082 * 90.00359 * 15 14 13 17 17 C 1.31784 * 117.11934 * 179.97438 * 16 15 14 18 18 C 1.50699 * 122.74636 * 179.97438 * 17 16 15 19 19 C 1.52997 * 117.50038 * 163.64255 * 18 17 16 20 20 C 1.52994 * 60.00279 * 252.50894 * 19 18 17 21 21 C 1.33639 * 114.50435 * 359.97438 * 17 16 15 22 22 S 1.70976 * 124.91946 * 269.69590 * 15 14 13 23 23 H 0.97000 * 120.00186 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46948 * 59.99685 * 10 9 7 25 25 H 1.09000 * 109.46809 * 299.99857 * 10 9 7 26 26 H 0.97000 * 120.00231 * 359.97438 * 13 11 10 27 27 H 1.09000 * 109.46864 * 60.00469 * 14 13 11 28 28 H 1.09000 * 109.47078 * 299.99722 * 14 13 11 29 29 H 1.08997 * 115.55433 * 309.35076 * 18 17 16 30 30 H 1.09003 * 117.50093 * 359.97438 * 19 18 17 31 31 H 1.09000 * 117.50635 * 145.02152 * 19 18 17 32 32 H 1.08998 * 117.50130 * 252.51193 * 20 19 18 33 33 H 1.09007 * 117.52039 * 107.47521 * 20 19 18 34 34 H 1.07994 * 126.03803 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0018 14 6 2.3304 -7.7151 -0.0019 15 6 3.4849 -8.6838 -0.0032 16 7 4.0515 -9.1589 1.0542 17 6 5.0512 -9.9985 0.8743 18 6 5.8028 -10.6281 2.0187 19 6 6.6662 -11.8525 1.7082 20 6 5.3549 -12.0168 2.4791 21 6 5.3438 -10.2457 -0.4060 22 16 4.2286 -9.3181 -1.4061 23 1 -0.4850 0.8400 0.0004 24 1 3.1245 -3.7313 0.8894 25 1 3.1245 -3.7314 -0.8905 26 1 3.8009 -6.1834 -0.0022 27 1 1.7214 -7.8749 -0.8916 28 1 1.7222 -7.8753 0.8884 29 1 6.1639 -9.9375 2.7807 30 1 6.6903 -12.2028 0.6763 31 1 7.5957 -11.9675 2.2659 32 1 5.4216 -12.2397 3.5440 33 1 4.5162 -12.4747 1.9546 34 1 6.1241 -10.9008 -0.7643 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124339489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:54 Heat of formation + Delta-G solvation = 9.173758 kcal Electronic energy + Delta-G solvation = -17920.374411 eV Core-core repulsion = 14878.262367 eV Total energy + Delta-G solvation = -3042.112045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 298.055 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29873 -40.55207 -37.80177 -35.94599 -34.57841 -32.28611 -30.62075 -28.28034 -27.59827 -25.85640 -23.25105 -22.58253 -21.91959 -20.46913 -19.93201 -19.01148 -17.91322 -17.46391 -16.87270 -16.80017 -16.64843 -16.18790 -15.91468 -15.19360 -14.98517 -14.84979 -14.41949 -14.34927 -13.90690 -13.51053 -13.29091 -13.16750 -12.86008 -12.63114 -12.41369 -12.28416 -11.76134 -11.61204 -11.38088 -11.12417 -11.11540 -10.73738 -10.49437 -10.28671 -10.28610 -9.74062 -8.66352 -8.33990 -6.12143 -0.48492 0.26895 0.66377 1.24129 1.43274 1.44505 1.52919 1.54275 1.63881 2.26960 2.30714 2.67657 3.00037 3.06005 3.31049 3.58713 3.90837 3.93927 4.02330 4.13982 4.20931 4.28741 4.31875 4.49975 4.51796 4.53654 4.76284 4.92788 5.07561 5.16554 5.19271 5.23278 5.42360 6.20237 6.33490 6.67268 7.07144 7.11415 8.74933 Molecular weight = 298.06amu Principal moments of inertia in cm(-1) A = 0.031058 B = 0.002500 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.332872 B =11197.131343 C =11440.756303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.147 6.147 10 C -0.129 4.129 11 C 0.541 3.459 12 O -0.558 6.558 13 N -0.710 5.710 14 C 0.203 3.797 15 C 0.007 3.993 16 N -0.476 5.476 17 C 0.077 3.923 18 C -0.107 4.107 19 C -0.148 4.148 20 C -0.168 4.168 21 C -0.244 4.244 22 S 0.191 5.809 23 H 0.271 0.729 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.414 0.586 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.240 -24.993 -1.199 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.081 5.919 10 C -0.280 4.280 11 C 0.327 3.673 12 O -0.435 6.435 13 N -0.365 5.365 14 C 0.076 3.924 15 C -0.270 4.270 16 N -0.192 5.192 17 C -0.055 4.055 18 C -0.128 4.128 19 C -0.185 4.185 20 C -0.206 4.206 21 C -0.384 4.384 22 S 0.446 5.554 23 H 0.080 0.920 24 H 0.127 0.873 25 H 0.132 0.868 26 H 0.250 0.750 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 14.703 -24.943 -1.794 29.010 hybrid contribution 2.119 1.014 0.906 2.518 sum 16.822 -23.930 -0.887 29.264 Atomic orbital electron populations 1.70173 1.07941 1.28691 1.47903 1.26127 0.95979 1.03311 0.93741 0.85006 0.77804 0.75714 0.79483 1.18581 1.20395 1.18774 1.23172 0.95369 0.92000 1.58993 0.89896 1.85556 1.10236 0.99094 1.97061 1.23361 1.03756 0.93942 1.06980 1.20026 0.86049 0.86378 0.74859 1.90707 1.17068 1.85930 1.49816 1.45704 1.10452 1.04191 1.76196 1.19654 0.90649 0.77685 1.04397 1.26666 1.03380 1.04316 0.92612 1.66003 1.09248 1.11131 1.32809 1.19671 0.94455 0.97212 0.94205 1.20413 1.03547 0.91338 0.97487 1.23169 0.95251 0.97621 1.02502 1.23046 0.98979 0.96805 1.01740 1.27310 1.07156 1.08546 0.95347 1.84005 1.24594 1.36788 1.09976 0.91972 0.87328 0.86810 0.74972 0.88379 0.89851 0.86743 0.87277 0.86355 0.87307 0.89320 0.77562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.02 13.22 21.65 0.29 -55.74 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.62 29.55 68.60 2.03 45.64 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.14 20.57 -56.49 -1.16 -9.30 16 10 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 11 C 0.54 20.00 7.85 87.66 0.69 20.68 16 12 O -0.56 -25.55 15.86 -3.03 -0.05 -25.60 16 13 N -0.71 -18.98 5.55 -466.77 -2.59 -21.57 16 14 C 0.20 4.95 6.25 85.63 0.54 5.48 16 15 C 0.01 0.15 6.76 88.52 0.60 0.75 16 16 N -0.48 -11.18 10.53 -179.39 -1.89 -13.07 16 17 C 0.08 1.41 6.41 41.52 0.27 1.68 16 18 C -0.11 -1.58 6.30 -11.54 -0.07 -1.65 16 19 C -0.15 -1.24 9.91 30.59 0.30 -0.94 16 20 C -0.17 -2.00 10.23 30.59 0.31 -1.69 16 21 C -0.24 -3.33 10.52 66.78 0.70 -2.63 16 22 S 0.19 2.87 23.18 -56.49 -1.31 1.56 16 23 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 24 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 25 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 26 H 0.41 8.91 8.46 -92.71 -0.78 8.13 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.11 0.63 6.80 -2.39 -0.02 0.62 16 31 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.21 1.46 6.96 -2.91 -0.02 1.44 16 Total: -1.00 -76.21 328.63 0.55 -75.66 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.35 Total: 14.81 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 4.88 Total: -12.40 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -4.19 Total: -90.38 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -2.47 Total: -7.74 kcal Total: -76.21 0.55 -75.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124339489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.830 kcal (2) G-P(sol) polarization free energy of solvation -76.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds