Wall clock time and date at job start Tue Mar 31 2020 07:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00093 * 2 1 4 4 H 1.48501 * 109.46953 * 239.99503 * 3 2 1 5 5 H 1.48494 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47032 * 120.00107 * 3 2 1 7 7 C 1.40007 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00495 * 197.54869 * 7 2 1 9 9 C 1.40763 * 119.99697 * 17.55162 * 7 2 1 10 10 C 1.40810 * 120.30726 * 25.03725 * 9 7 2 11 11 C 1.36308 * 120.02226 * 179.71088 * 10 9 7 12 12 C 1.39280 * 120.67758 * 0.57090 * 11 10 9 13 13 F 1.35102 * 119.68201 * 179.72797 * 12 11 10 14 14 C 1.38278 * 120.63015 * 359.71320 * 12 11 10 15 15 C 1.39207 * 119.94594 * 359.97438 * 14 12 11 16 16 C 1.47656 * 120.32699 * 180.02562 * 15 14 12 17 17 C 1.39110 * 120.00699 * 64.97942 * 16 15 14 18 18 C 1.38367 * 120.01024 * 179.97438 * 17 16 15 19 19 C 1.37385 * 120.63977 * 0.02562 * 18 17 16 20 20 C 1.41232 * 120.67760 * 359.97438 * 19 18 17 21 21 C 1.45437 * 129.23514 * 180.02562 * 20 19 18 22 22 C 1.31828 * 114.89496 * 179.97438 * 21 20 19 23 23 S 1.75294 * 111.37074 * 359.97438 * 22 21 20 24 24 C 1.39581 * 118.93749 * 359.75927 * 20 19 18 25 25 H 0.97002 * 119.99953 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.98721 * 0.02562 * 10 9 7 27 27 H 1.08002 * 119.66156 * 180.28172 * 11 10 9 28 28 H 1.07997 * 120.02513 * 180.02562 * 14 12 11 29 29 H 1.08000 * 119.99319 * 0.02562 * 17 16 15 30 30 H 1.07994 * 119.68156 * 180.02562 * 18 17 16 31 31 H 1.08001 * 119.65910 * 179.97438 * 19 18 17 32 32 H 1.08003 * 122.55130 * 0.02562 * 21 20 19 33 33 H 1.08000 * 124.31225 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0083 -1.2125 0.0005 8 1 3.0506 -1.2342 0.2825 9 6 1.3536 -2.4033 -0.3666 10 6 0.2258 -2.3636 -1.2087 11 6 -0.4001 -3.5207 -1.5653 12 6 0.0566 -4.7497 -1.0953 13 9 -0.5825 -5.8837 -1.4571 14 6 1.1579 -4.8202 -0.2622 15 6 1.8209 -3.6552 0.1133 16 6 2.9982 -3.7208 1.0021 17 6 4.1617 -4.3495 0.5704 18 6 5.2651 -4.4105 1.4030 19 6 5.2261 -3.8550 2.6590 20 6 4.0596 -3.2100 3.1257 21 6 3.8147 -2.5651 4.4061 22 6 2.6107 -2.0465 4.5450 23 16 1.6386 -2.2946 3.1075 24 6 2.9452 -3.1405 2.2881 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1403 -1.4163 -1.5764 27 1 -1.2619 -3.4839 -2.2153 28 1 1.5040 -5.7784 0.0962 29 1 4.2039 -4.7893 -0.4151 30 1 6.1657 -4.8995 1.0624 31 1 6.0964 -3.9122 3.2959 32 1 4.5627 -2.5141 5.1835 33 1 2.2671 -1.5341 5.4314 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241404740.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:43 Heat of formation + Delta-G solvation = 8.733842 kcal Electronic energy + Delta-G solvation = -20833.334218 eV Core-core repulsion = 17635.839184 eV Total energy + Delta-G solvation = -3197.495034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 298.052 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.50407 -39.03979 -37.36754 -34.61467 -33.75659 -31.64557 -29.58466 -28.76624 -28.26007 -25.20105 -23.08236 -22.67871 -21.21693 -20.41468 -19.60039 -17.59164 -17.22556 -16.04866 -15.50000 -15.24330 -14.73161 -14.47871 -14.46158 -14.24538 -14.07318 -13.26682 -13.07088 -12.98080 -12.51507 -12.13796 -12.04783 -11.90316 -11.39925 -11.26007 -11.17620 -10.93153 -10.77684 -10.69100 -10.43858 -10.10597 -9.91481 -9.54386 -9.28199 -8.85306 -7.99378 -7.73953 -7.47992 -7.02321 -6.83264 -4.51619 1.29590 1.78825 2.26482 2.50915 2.65557 2.78933 2.89329 2.97214 3.00605 3.07366 3.79882 4.26602 4.39400 5.05438 5.28012 5.37059 5.51824 5.64624 5.75445 5.76724 5.93682 6.01821 6.12005 6.27552 6.38685 6.41091 6.58847 6.79938 6.85745 6.93942 6.97886 7.02704 7.10273 7.30835 7.37474 7.59637 7.73534 7.82399 8.02797 8.37291 8.62696 8.70424 9.93928 Molecular weight = 298.05amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.008919 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.998795 B = 3138.589117 C = 4680.281123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.083 3.917 3 Si 0.902 3.098 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.082 0.918 9 C 0.126 3.874 10 C -0.137 4.137 11 C -0.122 4.122 12 C -0.051 4.051 13 F -0.174 7.174 14 C -0.088 4.088 15 C -0.187 4.187 16 C 0.060 3.940 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.106 4.106 20 C -0.085 4.085 21 C -0.132 4.132 22 C -0.221 4.221 23 S 0.149 5.851 24 C -0.118 4.118 25 H 0.286 0.714 26 H 0.129 0.871 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.551 -1.190 4.851 7.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.138 4.138 3 Si 0.726 3.274 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.460 4.460 8 H 0.100 0.900 9 C 0.123 3.877 10 C -0.157 4.157 11 C -0.141 4.141 12 C -0.071 4.071 13 F -0.153 7.153 14 C -0.107 4.107 15 C -0.188 4.188 16 C 0.056 3.944 17 C -0.141 4.141 18 C -0.139 4.139 19 C -0.126 4.126 20 C -0.094 4.094 21 C -0.163 4.163 22 C -0.356 4.356 23 S 0.417 5.583 24 C -0.234 4.234 25 H 0.097 0.903 26 H 0.146 0.854 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.150 0.850 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.769 -0.602 4.560 5.946 hybrid contribution 1.658 0.289 0.395 1.729 sum 5.427 -0.313 4.954 7.355 Atomic orbital electron populations 1.69779 1.07600 1.29978 1.32485 1.25905 0.94677 1.01379 0.91824 0.86427 0.80467 0.80067 0.80488 1.18546 1.20023 1.18526 1.19476 0.98210 0.90794 1.37492 0.90031 1.17506 0.90663 0.90947 0.88626 1.20938 0.98409 0.96651 0.99656 1.20495 1.00277 0.91916 1.01421 1.17116 0.99118 0.81410 1.09450 1.91286 1.82010 1.50393 1.91646 1.20472 0.95153 0.97140 0.97911 1.18275 1.00607 0.93271 1.06696 1.18043 0.93435 0.93153 0.89742 1.21179 0.92166 1.01087 0.99633 1.20715 0.98309 1.00746 0.94088 1.20740 0.96027 0.99608 0.96247 1.19228 0.94572 1.01951 0.93629 1.20755 0.97372 1.01566 0.96635 1.25329 0.99553 1.06819 1.03877 1.84845 1.13392 1.56812 1.03281 1.22861 0.97629 1.04766 0.98145 0.90278 0.85380 0.88168 0.88001 0.85893 0.86395 0.86720 0.85019 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.09 10.97 55.55 0.61 -17.48 16 2 C 0.08 1.90 5.14 -17.32 -0.09 1.81 16 3 Si 0.90 17.68 29.59 -169.99 -5.03 12.65 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.43 -10.41 7.10 -37.97 -0.27 -10.67 16 8 H 0.08 2.01 7.09 -52.49 -0.37 1.64 16 9 C 0.13 3.07 5.52 -106.54 -0.59 2.48 16 10 C -0.14 -3.32 8.62 -39.30 -0.34 -3.66 16 11 C -0.12 -2.81 9.94 -39.89 -0.40 -3.20 16 12 C -0.05 -1.19 7.30 -39.18 -0.29 -1.47 16 13 F -0.17 -3.91 17.26 2.25 0.04 -3.87 16 14 C -0.09 -1.98 9.70 -39.21 -0.38 -2.36 16 15 C -0.19 -4.30 5.12 -104.26 -0.53 -4.83 16 16 C 0.06 1.27 4.40 -104.61 -0.46 0.81 16 17 C -0.12 -2.18 9.72 -39.21 -0.38 -2.56 16 18 C -0.12 -1.86 9.98 -39.84 -0.40 -2.26 16 19 C -0.11 -1.69 10.09 -38.76 -0.39 -2.08 16 20 C -0.09 -1.55 6.04 -105.39 -0.64 -2.19 16 21 C -0.13 -2.10 10.39 -38.61 -0.40 -2.50 16 22 C -0.22 -3.59 11.02 28.84 0.32 -3.27 16 23 S 0.15 2.98 21.97 -107.50 -2.36 0.62 16 24 C -0.12 -2.43 5.53 -37.96 -0.21 -2.64 16 25 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 26 H 0.13 3.13 6.18 -52.48 -0.32 2.80 16 27 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 28 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 33 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 304.68 15.07 4.59 4.59 Total: -1.00 -25.84 304.68 -10.39 -36.22 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -2.79 Total: 5.87 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: -5.44 Total: -38.59 kcal Atomic # 7 Polarization: -18.09 SS G_CDS: 0.61 Total: -17.48 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.36 Total: 0.62 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -25.84 -10.39 -36.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241404740.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.955 kcal (2) G-P(sol) polarization free energy of solvation -25.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds