Wall clock time and date at job start Tue Mar 31 2020 07:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00081 * 2 1 4 4 H 1.48499 * 109.47081 * 270.00221 * 3 2 1 5 5 H 1.48503 * 109.46919 * 29.99678 * 3 2 1 6 6 H 1.48494 * 109.47301 * 149.99881 * 3 2 1 7 7 C 1.37880 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00107 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99980 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46950 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47056 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47079 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00173 * 179.97438 * 12 11 10 14 14 S 1.71199 * 119.99466 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00107 * 180.27739 * 13 12 11 16 16 C 1.39950 * 119.99676 * 175.41762 * 15 13 12 17 17 C 1.38851 * 120.07916 * 47.36345 * 16 15 13 18 18 C 1.38109 * 119.94321 * 180.02562 * 17 16 15 19 19 C 1.38295 * 120.09278 * 0.02562 * 18 17 16 20 20 C 1.38263 * 120.15270 * 359.97438 * 19 18 17 21 21 C 1.38220 * 120.05368 * 359.72675 * 20 19 18 22 22 Cl 1.73607 * 120.04738 * 180.29449 * 21 20 19 23 23 H 0.97003 * 120.00074 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46474 * 60.00129 * 9 7 2 25 25 H 1.08997 * 109.47166 * 299.99904 * 9 7 2 26 26 H 1.08999 * 109.47191 * 59.99836 * 10 9 7 27 27 H 1.09001 * 109.47420 * 300.00495 * 10 9 7 28 28 H 1.08999 * 109.46907 * 60.00520 * 11 10 9 29 29 H 1.08997 * 109.47071 * 300.00074 * 11 10 9 30 30 H 0.97004 * 120.00315 * 0.02562 * 12 11 10 31 31 H 0.97005 * 120.00129 * 355.41708 * 15 13 12 32 32 H 1.08003 * 120.02898 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.95342 * 179.97438 * 18 17 16 34 34 H 1.08007 * 119.92421 * 179.97438 * 19 18 17 35 35 H 1.07997 * 119.97062 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0009 12 7 6.0399 -4.0176 -0.0002 13 6 7.3651 -4.2639 -0.0006 14 16 8.4775 -2.9626 -0.0012 15 7 7.8143 -5.5346 -0.0055 16 6 9.1866 -5.7912 -0.1027 17 6 10.0827 -5.0990 0.7010 18 6 11.4364 -5.3540 0.6024 19 6 11.9007 -6.2973 -0.2960 20 6 11.0119 -6.9889 -1.0982 21 6 9.6553 -6.7430 -1.0003 22 17 8.5389 -7.6169 -2.0022 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6804 0.8889 25 1 3.8746 -0.6800 -0.8911 26 1 3.6579 -3.1505 -0.8907 27 1 3.6586 -3.1502 0.8892 28 1 5.9149 -2.1226 0.8891 29 1 5.9149 -2.1227 -0.8909 30 1 5.4096 -4.7550 -0.0002 31 1 7.1865 -6.2713 0.0583 32 1 9.7214 -4.3612 1.4021 33 1 12.1335 -4.8154 1.2271 34 1 12.9600 -6.4943 -0.3712 35 1 11.3776 -7.7252 -1.7985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728799607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:24 Heat of formation + Delta-G solvation = 29.002202 kcal Electronic energy + Delta-G solvation = -18320.393122 eV Core-core repulsion = 15277.097196 eV Total energy + Delta-G solvation = -3043.295925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 298.060 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43809 -38.54018 -36.83402 -36.02759 -33.71973 -31.80303 -31.08908 -29.84692 -27.33597 -24.59174 -23.34935 -22.75478 -22.37392 -20.50168 -18.81881 -18.34115 -16.97243 -16.65683 -16.06907 -15.97019 -15.30494 -14.99678 -14.58279 -14.10914 -14.05798 -13.97588 -13.46539 -12.77147 -12.38528 -12.21266 -12.09067 -11.82197 -11.71178 -11.34447 -11.26600 -11.16605 -10.98096 -10.25794 -10.04791 -9.85861 -9.77501 -9.31140 -9.18603 -8.72586 -8.60655 -7.90891 -7.21076 -6.11576 -4.11399 0.61819 0.97519 1.37050 1.69332 1.84007 2.40068 3.29071 3.29821 3.37018 3.37792 3.41355 4.40422 4.46092 4.67457 4.87559 4.98853 5.11185 5.21171 5.22374 5.46655 5.48628 5.71518 5.79886 5.84550 5.94801 6.12192 6.19806 6.25518 6.39063 6.49951 6.61505 6.76275 7.08524 7.12633 7.25829 7.68665 8.42933 8.90916 9.50150 11.01432 Molecular weight = 298.06amu Principal moments of inertia in cm(-1) A = 0.028978 B = 0.002871 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.015362 B = 9751.390487 C =10470.298756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.116 4.116 11 C 0.115 3.885 12 N -0.664 5.664 13 C 0.556 3.444 14 S -0.624 6.624 15 N -0.641 5.641 16 C 0.142 3.858 17 C -0.055 4.055 18 C -0.111 4.111 19 C -0.104 4.104 20 C -0.112 4.112 21 C -0.043 4.043 22 Cl -0.068 7.068 23 H 0.264 0.736 24 H 0.022 0.978 25 H 0.017 0.983 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.400 0.600 31 H 0.407 0.593 32 H 0.155 0.845 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.253 -17.527 0.257 28.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.046 4.046 10 C -0.154 4.154 11 C -0.007 4.007 12 N -0.288 5.288 13 C 0.197 3.803 14 S -0.494 6.494 15 N -0.269 5.269 16 C 0.047 3.953 17 C -0.078 4.078 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.132 4.132 21 C -0.072 4.072 22 Cl -0.040 7.040 23 H 0.074 0.926 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.236 0.764 31 H 0.246 0.754 32 H 0.173 0.827 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 22.608 -16.405 0.151 27.934 hybrid contribution -1.069 -0.551 -0.235 1.225 sum 21.539 -16.956 -0.084 27.413 Atomic orbital electron populations 1.69907 1.06360 1.27082 1.50686 1.25020 0.94756 0.99302 0.94300 0.86779 0.80458 0.83409 0.78721 1.20149 1.21324 1.18709 1.21046 0.89162 0.94528 1.51590 0.91085 1.19476 0.97327 0.90795 0.97034 1.21790 0.89902 1.01812 1.01869 1.22250 0.96106 0.77756 1.04625 1.45463 1.02970 1.12343 1.68064 1.22364 0.88438 0.88977 0.80493 1.93428 1.49169 1.33493 1.73325 1.42069 1.06946 1.05443 1.72412 1.17057 0.82081 0.98740 0.97382 1.21518 0.92590 0.96310 0.97347 1.21131 0.95079 0.97705 0.99137 1.21177 0.99766 0.95799 0.95506 1.20821 0.90038 1.01428 1.00868 1.20890 0.91555 0.99256 0.95500 1.98377 1.62263 1.75132 1.68190 0.92608 0.96006 0.96434 0.92006 0.91986 0.89376 0.89400 0.76392 0.75424 0.82738 0.84836 0.84969 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.53 -14.41 9.66 -34.44 -0.33 -14.74 16 8 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 9 C -0.01 -0.19 4.04 -27.88 -0.11 -0.30 16 10 C -0.12 -1.98 5.27 -26.73 -0.14 -2.12 16 11 C 0.11 1.70 5.13 -4.04 -0.02 1.68 16 12 N -0.66 -7.87 5.56 -62.03 -0.34 -8.21 16 13 C 0.56 7.11 7.85 -86.91 -0.68 6.43 16 14 S -0.62 -10.37 25.00 -107.50 -2.69 -13.06 16 15 N -0.64 -6.44 4.84 -11.37 -0.06 -6.49 16 16 C 0.14 1.50 5.87 -83.65 -0.49 1.01 16 17 C -0.06 -0.58 7.88 -39.40 -0.31 -0.89 16 18 C -0.11 -0.92 10.04 -39.61 -0.40 -1.32 16 19 C -0.10 -0.75 10.04 -39.55 -0.40 -1.14 16 20 C -0.11 -0.89 9.82 -39.58 -0.39 -1.28 16 21 C -0.04 -0.41 6.34 -39.32 -0.25 -0.66 16 22 Cl -0.07 -0.62 28.22 -51.86 -1.46 -2.08 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 25 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.09 1.39 7.99 -51.93 -0.42 0.98 16 29 H 0.09 1.42 7.99 -51.93 -0.41 1.00 16 30 H 0.40 3.61 8.49 -40.82 -0.35 3.27 16 31 H 0.41 3.04 8.53 -40.82 -0.35 2.70 16 32 H 0.16 1.84 6.31 -49.74 -0.31 1.53 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -32.72 324.05 -11.49 -44.21 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.31 Total: 2.09 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.62 Total: -11.49 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.37 Total: -41.28 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: -10.37 SS G_CDS: -2.69 Total: -13.06 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.46 Total: -2.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.72 -11.49 -44.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728799607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.208 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds