Wall clock time and date at job start Tue Mar 31 2020 07:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47189 * 2 1 4 4 C 1.38393 * 119.84416 * 274.46325 * 3 2 1 5 5 C 1.37908 * 120.15339 * 179.72266 * 4 3 2 6 6 C 1.39694 * 119.84492 * 0.26081 * 5 4 3 7 7 C 1.47654 * 120.15405 * 179.97438 * 6 5 4 8 8 O 1.21511 * 120.00245 * 179.97438 * 7 6 5 9 9 O 1.34735 * 120.00515 * 359.97438 * 7 6 5 10 10 C 1.34849 * 117.00298 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99990 * 359.97438 * 10 9 7 12 12 C 1.38812 * 119.99895 * 180.02562 * 10 9 7 13 13 N 1.31420 * 120.00059 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00157 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46988 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47230 * 119.99566 * 14 12 10 17 17 H 1.48501 * 109.47076 * 239.99969 * 14 12 10 18 18 C 1.39648 * 119.68946 * 359.97438 * 6 5 4 19 19 C 1.37955 * 119.84693 * 0.02562 * 18 6 5 20 20 S 1.76200 * 119.92222 * 179.97438 * 19 18 6 21 21 C 1.81400 * 104.44799 * 247.96834 * 20 19 18 22 22 O 1.42092 * 104.27839 * 4.04195 * 20 19 18 23 23 O 1.42103 * 104.27451 * 131.89690 * 20 19 18 24 24 H 1.08997 * 109.47466 * 178.57376 * 1 2 3 25 25 H 1.08997 * 109.47272 * 298.57995 * 1 2 3 26 26 H 1.09008 * 109.46836 * 58.57735 * 1 2 3 27 27 H 1.09005 * 109.46835 * 239.99885 * 2 1 3 28 28 H 1.08996 * 109.46681 * 120.00570 * 2 1 3 29 29 H 1.08002 * 119.92674 * 0.02562 * 4 3 2 30 30 H 1.08005 * 120.08319 * 180.27355 * 5 4 3 31 31 H 0.96999 * 119.99910 * 179.97438 * 13 12 10 32 32 H 1.08002 * 120.07272 * 179.97438 * 18 6 5 33 33 H 1.08998 * 109.47162 * 67.31259 * 21 20 19 34 34 H 1.08993 * 109.46863 * 187.32192 * 21 20 19 35 35 H 1.09008 * 109.46884 * 307.31256 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1739 2.1013 -1.1968 5 6 2.6276 3.4036 -1.2037 6 6 2.9498 4.0339 0.0005 7 6 3.4368 5.4279 0.0010 8 8 3.7158 5.9737 1.0501 9 8 3.5717 6.0948 -1.1620 10 6 4.0216 7.3641 -1.0912 11 1 4.2552 7.8015 -0.1318 12 6 4.1834 8.1087 -2.2514 13 7 3.8987 7.5766 -3.4189 14 14 4.8060 9.8672 -2.1535 15 1 5.0512 10.2271 -0.7338 16 1 6.0716 9.9878 -2.9209 17 1 3.7894 10.7849 -2.7277 18 6 2.8092 3.3396 1.2040 19 6 2.3542 2.0372 1.1961 20 16 2.1768 1.1590 2.7133 21 6 3.4512 -0.1299 2.6419 22 8 2.4932 2.1184 3.7126 23 8 0.8800 0.5831 2.6351 24 1 -0.3634 -1.0273 -0.0256 25 1 -0.3633 0.4916 0.9024 26 1 -0.3633 0.5358 -0.8770 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.9238 1.6130 -2.1270 30 1 2.7334 3.9350 -2.1380 31 1 4.0114 8.0971 -4.2296 32 1 3.0570 3.8208 2.1386 33 1 4.4376 0.3318 2.6841 34 1 3.3305 -0.8073 3.4872 35 1 3.3510 -0.6888 1.7114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766166323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:14 Heat of formation + Delta-G solvation = -148.376680 kcal Electronic energy + Delta-G solvation = -21843.983442 eV Core-core repulsion = 18319.993876 eV Total energy + Delta-G solvation = -3523.989566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.075 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45208 -40.19321 -38.28791 -37.37477 -36.98892 -35.21247 -34.38895 -32.48393 -30.88199 -30.38720 -27.78550 -25.73189 -24.40990 -23.10346 -21.93708 -20.20721 -19.93493 -19.24915 -17.81869 -17.31231 -17.14609 -16.95309 -16.69226 -16.43997 -16.32194 -15.86571 -15.15121 -14.82147 -14.75489 -14.47290 -13.97832 -13.87268 -13.74857 -13.65678 -13.32672 -13.20246 -13.11378 -12.92933 -12.74519 -12.46857 -12.28067 -12.17098 -12.06284 -12.01966 -11.68822 -11.58935 -11.22426 -10.77808 -10.51384 -10.01629 -8.64143 -6.41269 -0.90325 -0.49760 -0.13279 1.29013 1.31259 1.49766 1.57872 1.82932 2.03896 2.42669 2.55749 2.91003 2.96591 3.22045 3.52014 3.61937 3.89946 4.02856 4.09333 4.10570 4.23357 4.41682 4.47536 4.52756 4.68995 4.80097 4.89046 4.96930 5.05349 5.11223 5.17535 5.19362 5.31364 5.61331 5.68274 5.72742 6.49375 6.80381 7.60536 8.56387 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.003889 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.832369 B = 7198.058032 C = 7917.946284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C 0.038 3.962 4 C -0.134 4.134 5 C -0.024 4.024 6 C -0.147 4.147 7 C 0.428 3.572 8 O -0.582 6.582 9 O -0.227 6.227 10 C -0.424 4.424 11 H 0.081 0.919 12 C 0.001 3.999 13 N -0.893 5.893 14 Si 1.020 2.980 15 H -0.267 1.267 16 H -0.255 1.255 17 H -0.257 1.257 18 C 0.016 3.984 19 C -0.671 4.671 20 S 2.497 3.503 21 C -0.627 4.627 22 O -0.986 6.986 23 O -0.945 6.945 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.125 0.875 28 H 0.089 0.911 29 H 0.177 0.823 30 H 0.135 0.865 31 H 0.283 0.717 32 H 0.135 0.865 33 H 0.149 0.851 34 H 0.167 0.833 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 -21.544 4.112 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.146 4.146 3 C 0.037 3.963 4 C -0.152 4.152 5 C -0.043 4.043 6 C -0.149 4.149 7 C 0.278 3.722 8 O -0.482 6.482 9 O -0.135 6.135 10 C -0.499 4.499 11 H 0.099 0.901 12 C -0.200 4.200 13 N -0.529 5.529 14 Si 0.838 3.162 15 H -0.191 1.191 16 H -0.179 1.179 17 H -0.181 1.181 18 C -0.003 4.003 19 C -0.754 4.754 20 S 2.679 3.321 21 C -0.781 4.781 22 O -0.983 6.983 23 O -0.942 6.942 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.107 0.893 29 H 0.195 0.805 30 H 0.153 0.847 31 H 0.092 0.908 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.185 0.815 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.061 -21.127 4.740 21.868 hybrid contribution 0.828 1.619 -0.581 1.909 sum -2.232 -19.508 4.160 20.071 Atomic orbital electron populations 1.21882 0.93056 1.03725 1.02688 1.21243 0.98129 0.89072 1.06202 1.20253 0.88115 0.97040 0.90854 1.21490 1.00701 0.93072 0.99955 1.21893 0.90079 0.95392 0.96906 1.19338 1.08169 0.90952 0.96457 1.21714 0.79385 0.88456 0.82635 1.90595 1.53025 1.70733 1.33889 1.83890 1.70504 1.27178 1.31914 1.21562 1.46269 0.86236 0.95822 0.90116 1.26579 0.95664 1.04840 0.92931 1.70038 1.44669 1.39594 0.98641 0.84545 0.78827 0.73631 0.79171 1.19105 1.17915 1.18137 1.20896 0.89608 0.92505 0.97276 1.30655 1.17484 1.06324 1.20970 1.05350 0.77665 0.76614 0.72495 1.30174 1.16701 1.16121 1.15109 1.93537 1.86266 1.61357 1.57140 1.93564 1.36314 1.78776 1.85586 0.89730 0.92028 0.92563 0.85710 0.89256 0.80525 0.84732 0.90785 0.84737 0.83255 0.81529 0.81787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.55 71.98 0.69 -1.82 16 2 C -0.11 -1.46 5.21 29.85 0.16 -1.30 16 3 C 0.04 0.86 5.13 -19.80 -0.10 0.75 16 4 C -0.13 -3.30 9.70 22.23 0.22 -3.09 16 5 C -0.02 -0.86 9.62 22.54 0.22 -0.65 16 6 C -0.15 -6.38 5.87 -20.10 -0.12 -6.50 16 7 C 0.43 23.85 7.84 70.31 0.55 24.40 16 8 O -0.58 -35.31 15.59 19.80 0.31 -35.00 16 9 O -0.23 -13.89 8.99 11.37 0.10 -13.78 16 10 C -0.42 -26.45 9.65 67.96 0.66 -25.79 16 11 H 0.08 5.17 6.86 -2.91 -0.02 5.15 16 12 C 0.00 0.07 5.50 84.89 0.47 0.54 16 13 N -0.89 -52.08 13.67 21.64 0.30 -51.78 16 14 Si 1.02 43.60 29.55 68.60 2.03 45.63 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 17 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 18 C 0.02 0.61 9.05 22.54 0.20 0.82 16 19 C -0.67 -18.29 5.59 22.23 0.12 -18.17 16 20 S 2.50 52.59 5.15 -56.49 -0.29 52.30 16 21 C -0.63 -4.83 10.40 113.37 1.18 -3.65 16 22 O -0.99 -30.64 16.74 -127.65 -2.14 -32.78 16 23 O -0.95 -22.04 13.90 -127.65 -1.77 -23.81 16 24 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.33 6.08 -2.39 -0.01 1.32 16 26 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.12 0.85 8.11 -2.38 -0.02 0.83 16 28 H 0.09 0.79 3.69 -2.39 -0.01 0.78 16 29 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 30 H 0.13 5.13 7.61 -2.91 -0.02 5.11 16 31 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.13 5.53 6.81 -2.91 -0.02 5.51 16 33 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.17 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.16 0.41 6.05 -2.39 -0.01 0.40 16 Total: -1.00 -88.04 312.13 3.90 -84.15 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.13 Total: 9.52 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 4.24 Total: -34.44 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.30 Total: -51.78 kcal Atomic # 8 Polarization: -101.87 SS G_CDS: -3.50 Total: -105.37 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -0.29 Total: 52.30 kcal Total: -88.04 3.90 -84.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766166323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.231 kcal (2) G-P(sol) polarization free energy of solvation -88.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds