Wall clock time and date at job start Tue Mar 31 2020 08:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99731 * 2 1 4 4 H 1.48501 * 109.46775 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47061 * 300.00159 * 3 2 1 6 6 H 1.48493 * 109.46818 * 60.00777 * 3 2 1 7 7 C 1.37881 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99410 * 175.13418 * 7 2 1 9 9 C 1.50696 * 119.99998 * 355.40510 * 7 2 1 10 10 C 1.53001 * 115.55142 * 274.92897 * 9 7 2 11 11 N 1.46899 * 109.46894 * 296.11216 * 10 9 7 12 12 C 1.40020 * 111.00180 * 175.24767 * 11 10 9 13 13 C 1.38992 * 120.08104 * 299.72524 * 12 11 10 14 14 F 1.35109 * 120.04458 * 359.97438 * 13 12 11 15 15 C 1.38337 * 119.91347 * 179.69705 * 13 12 11 16 16 C 1.38277 * 120.08123 * 0.57753 * 15 13 12 17 17 N 1.48019 * 119.91078 * 179.74406 * 16 15 13 18 18 O 1.21800 * 120.00090 * 179.97438 * 17 16 15 19 19 O 1.21796 * 120.00440 * 359.97327 * 17 16 15 20 20 C 1.38278 * 120.17187 * 359.71986 * 16 15 13 21 21 C 1.38334 * 120.08593 * 359.97438 * 20 16 15 22 22 F 1.35096 * 120.03895 * 180.02562 * 21 20 16 23 23 C 1.52997 * 117.49512 * 129.25474 * 9 7 2 24 24 C 1.53005 * 117.49639 * 60.59903 * 9 7 2 25 25 H 0.97000 * 119.99957 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47242 * 56.10906 * 10 9 7 27 27 H 1.08999 * 109.46657 * 176.11090 * 10 9 7 28 28 H 1.00909 * 111.00022 * 299.20189 * 11 10 9 29 29 H 1.08000 * 119.95631 * 180.31989 * 15 13 12 30 30 H 1.07995 * 119.95261 * 179.97438 * 20 16 15 31 31 H 1.08996 * 117.50107 * 0.02562 * 23 9 7 32 32 H 1.09004 * 117.49721 * 145.02079 * 23 9 7 33 33 H 1.09005 * 117.49435 * 214.98023 * 24 9 7 34 34 H 1.09002 * 117.49859 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1956 -0.0799 9 6 1.2547 -2.4971 0.1034 10 6 0.9192 -2.9538 1.5246 11 7 2.1628 -3.2191 2.2601 12 6 1.8969 -3.5360 3.5977 13 6 1.2465 -2.6190 4.4150 14 9 0.8700 -1.4195 3.9199 15 6 0.9799 -2.9382 5.7344 16 6 1.3703 -4.1631 6.2436 17 7 1.0882 -4.4985 7.6574 18 8 1.4309 -5.5772 8.1075 19 8 0.5133 -3.6960 8.3707 20 6 2.0231 -5.0756 5.4353 21 6 2.2876 -4.7662 4.1132 22 9 2.9250 -5.6586 3.3243 23 6 1.5728 -3.5795 -0.9300 24 6 0.2450 -2.8211 -0.9996 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.1722 2.0339 27 1 0.3210 -3.8641 1.4819 28 1 2.6975 -3.9498 1.8147 29 1 0.4699 -2.2282 6.3686 30 1 2.3268 -6.0311 5.8368 31 1 2.3247 -3.3494 -1.6847 32 1 1.5427 -4.6172 -0.5974 33 1 -0.6580 -3.3599 -0.7128 34 1 0.1229 -2.0915 -1.8002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362361663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:27 Heat of formation + Delta-G solvation = -33.837157 kcal Electronic energy + Delta-G solvation = -23923.016739 eV Core-core repulsion = 19882.446343 eV Total energy + Delta-G solvation = -4040.570396 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.37923 -48.98302 -42.27642 -39.48444 -37.36975 -36.67675 -35.12960 -32.01936 -30.94080 -30.56136 -26.98959 -25.65390 -24.67151 -23.45855 -22.26833 -21.23423 -19.77229 -19.45921 -18.96281 -17.84877 -17.67454 -17.01077 -16.89930 -16.45847 -16.01826 -15.88614 -15.41761 -15.05557 -14.73171 -14.42279 -13.73106 -13.59623 -13.27850 -13.13245 -12.60776 -12.33585 -12.11745 -11.66767 -11.56188 -11.33571 -11.25284 -11.02989 -10.94350 -10.68510 -10.44834 -10.27411 -9.59937 -9.34792 -9.11102 -8.53817 -8.34844 -8.11542 -6.12948 -4.18000 -0.39319 0.42530 1.09585 1.17588 2.73436 3.23583 3.32751 3.36163 3.38627 3.71389 3.84442 4.12321 4.27736 4.34382 4.64252 4.98196 5.11913 5.15348 5.19657 5.26243 5.48288 5.68053 5.85820 5.91744 6.14313 6.18639 6.25700 6.48207 6.56194 6.85595 6.96695 7.15876 7.24252 7.42763 7.52474 7.79887 8.28493 8.82524 9.48155 10.95852 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.004586 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.468075 B = 6103.698250 C = 6967.897055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.072 3.928 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.481 4.481 8 H 0.061 0.939 9 C 0.039 3.961 10 C 0.094 3.906 11 N -0.589 5.589 12 C 0.130 3.870 13 C 0.104 3.896 14 F -0.094 7.094 15 C -0.072 4.072 16 C -0.043 4.043 17 N 0.039 4.961 18 O -0.163 6.163 19 O -0.159 6.159 20 C -0.068 4.068 21 C 0.058 3.942 22 F -0.117 7.117 23 C -0.215 4.215 24 C -0.142 4.142 25 H 0.260 0.740 26 H 0.098 0.902 27 H 0.024 0.976 28 H 0.366 0.634 29 H 0.170 0.830 30 H 0.167 0.833 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.728 -8.751 8.516 12.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.519 4.519 8 H 0.079 0.921 9 C 0.038 3.962 10 C -0.030 4.030 11 N -0.208 5.208 12 C 0.021 3.979 13 C 0.080 3.920 14 F -0.072 7.072 15 C -0.093 4.093 16 C -0.129 4.129 17 N 0.558 4.442 18 O -0.378 6.378 19 O -0.375 6.375 20 C -0.089 4.089 21 C 0.033 3.967 22 F -0.095 7.095 23 C -0.253 4.253 24 C -0.181 4.181 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.042 0.958 28 H 0.190 0.810 29 H 0.188 0.812 30 H 0.185 0.815 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.848 -7.754 7.730 11.104 hybrid contribution 0.233 0.143 0.014 0.274 sum 2.081 -7.611 7.744 11.055 Atomic orbital electron populations 1.69996 1.05841 1.26507 1.49376 1.24941 0.94800 0.98939 0.94424 0.86577 0.80312 0.83806 0.77589 1.19712 1.21124 1.20883 1.20290 0.92635 0.88137 1.50805 0.92102 1.18796 0.99103 0.93737 0.84591 1.22160 0.85471 0.98821 0.96570 1.57151 1.21805 1.43799 0.98031 1.19585 0.93705 0.90044 0.94525 1.16431 1.02160 0.83139 0.90230 1.91693 1.88566 1.40032 1.86904 1.20780 0.98282 0.95788 0.94476 1.20005 1.12194 0.97805 0.82882 1.43295 0.98205 1.00138 1.02572 1.94537 1.55229 1.10784 1.77204 1.94554 1.40704 1.45645 1.56561 1.20648 0.96162 1.00867 0.91181 1.16857 1.03708 0.86841 0.89257 1.91554 1.79288 1.65753 1.72912 1.23069 1.00961 0.95263 1.05978 1.22511 0.90560 1.01333 1.03658 0.93030 0.88397 0.95793 0.80970 0.81220 0.81516 0.90032 0.92000 0.91986 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.54 12.65 55.43 0.70 -22.84 16 2 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16 3 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.48 -12.17 8.72 -34.44 -0.30 -12.47 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 9 C 0.04 0.85 1.63 -155.66 -0.25 0.60 16 10 C 0.09 1.83 5.24 -3.82 -0.02 1.81 16 11 N -0.59 -10.09 6.36 -58.22 -0.37 -10.46 16 12 C 0.13 1.90 5.78 -83.56 -0.48 1.42 16 13 C 0.10 1.53 6.96 -39.27 -0.27 1.26 16 14 F -0.09 -1.67 15.11 2.25 0.03 -1.64 16 15 C -0.07 -0.89 9.53 -39.53 -0.38 -1.27 16 16 C -0.04 -0.53 6.85 -79.92 -0.55 -1.08 16 17 N 0.04 0.53 4.45 33.98 0.15 0.68 16 18 O -0.16 -2.22 18.44 -29.46 -0.54 -2.76 16 19 O -0.16 -2.23 18.44 -29.46 -0.54 -2.77 16 20 C -0.07 -0.75 9.53 -39.53 -0.38 -1.13 16 21 C 0.06 0.72 7.29 -39.27 -0.29 0.43 16 22 F -0.12 -1.42 16.26 2.25 0.04 -1.39 16 23 C -0.22 -4.21 9.96 -26.70 -0.27 -4.47 16 24 C -0.14 -3.07 9.15 -26.69 -0.24 -3.31 16 25 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 26 H 0.10 2.13 5.96 -51.93 -0.31 1.83 16 27 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 28 H 0.37 5.71 7.71 -39.29 -0.30 5.41 16 29 H 0.17 1.82 7.60 -52.49 -0.40 1.42 16 30 H 0.17 1.52 7.60 -52.49 -0.40 1.12 16 31 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 LS Contribution 314.32 15.07 4.74 4.74 Total: -1.00 -26.52 314.32 -7.41 -33.93 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -3.07 Total: 3.46 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.53 Total: -16.45 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.48 Total: -32.63 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -1.09 Total: -5.54 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.07 Total: -3.03 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.52 -7.41 -33.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362361663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.094 kcal (2) G-P(sol) polarization free energy of solvation -26.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds