Wall clock time and date at job start Tue Mar 31 2020 08:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99731 * 2 1 4 4 H 1.48501 * 109.46775 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47061 * 300.00159 * 3 2 1 6 6 H 1.48493 * 109.46818 * 60.00777 * 3 2 1 7 7 C 1.37881 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99410 * 175.13418 * 7 2 1 9 9 C 1.50696 * 119.99998 * 355.40510 * 7 2 1 10 10 C 1.53001 * 115.55142 * 274.92897 * 9 7 2 11 11 N 1.46899 * 109.46894 * 296.11216 * 10 9 7 12 12 C 1.40020 * 111.00180 * 175.24767 * 11 10 9 13 13 C 1.38992 * 120.08104 * 299.72524 * 12 11 10 14 14 F 1.35109 * 120.04458 * 359.97438 * 13 12 11 15 15 C 1.38337 * 119.91347 * 179.69705 * 13 12 11 16 16 C 1.38277 * 120.08123 * 0.57753 * 15 13 12 17 17 N 1.48019 * 119.91078 * 179.74406 * 16 15 13 18 18 O 1.21800 * 120.00090 * 179.97438 * 17 16 15 19 19 O 1.21796 * 120.00440 * 359.97327 * 17 16 15 20 20 C 1.38278 * 120.17187 * 359.71986 * 16 15 13 21 21 C 1.38334 * 120.08593 * 359.97438 * 20 16 15 22 22 F 1.35096 * 120.03895 * 180.02562 * 21 20 16 23 23 C 1.52997 * 117.49512 * 129.25474 * 9 7 2 24 24 C 1.53005 * 117.49639 * 60.59903 * 9 7 2 25 25 H 0.97000 * 119.99957 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47242 * 56.10906 * 10 9 7 27 27 H 1.08999 * 109.46657 * 176.11090 * 10 9 7 28 28 H 1.00909 * 111.00022 * 299.20189 * 11 10 9 29 29 H 1.08000 * 119.95631 * 180.31989 * 15 13 12 30 30 H 1.07995 * 119.95261 * 179.97438 * 20 16 15 31 31 H 1.08996 * 117.50107 * 0.02562 * 23 9 7 32 32 H 1.09004 * 117.49721 * 145.02079 * 23 9 7 33 33 H 1.09005 * 117.49435 * 214.98023 * 24 9 7 34 34 H 1.09002 * 117.49859 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1956 -0.0799 9 6 1.2547 -2.4971 0.1034 10 6 0.9192 -2.9538 1.5246 11 7 2.1628 -3.2191 2.2601 12 6 1.8969 -3.5360 3.5977 13 6 1.2465 -2.6190 4.4150 14 9 0.8700 -1.4195 3.9199 15 6 0.9799 -2.9382 5.7344 16 6 1.3703 -4.1631 6.2436 17 7 1.0882 -4.4985 7.6574 18 8 1.4309 -5.5772 8.1075 19 8 0.5133 -3.6960 8.3707 20 6 2.0231 -5.0756 5.4353 21 6 2.2876 -4.7662 4.1132 22 9 2.9250 -5.6586 3.3243 23 6 1.5728 -3.5795 -0.9300 24 6 0.2450 -2.8211 -0.9996 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.1722 2.0339 27 1 0.3210 -3.8641 1.4819 28 1 2.6975 -3.9498 1.8147 29 1 0.4699 -2.2282 6.3686 30 1 2.3268 -6.0311 5.8368 31 1 2.3247 -3.3494 -1.6847 32 1 1.5427 -4.6172 -0.5974 33 1 -0.6580 -3.3599 -0.7128 34 1 0.1229 -2.0915 -1.8002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362361663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:26 Heat of formation + Delta-G solvation = -46.679882 kcal Electronic energy + Delta-G solvation = -23923.573641 eV Core-core repulsion = 19882.446343 eV Total energy + Delta-G solvation = -4041.127298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.36645 -50.22586 -43.32847 -40.60544 -38.87455 -37.74040 -36.48627 -33.95593 -31.96494 -31.72940 -28.33794 -27.38869 -26.04373 -24.51325 -23.40462 -22.85023 -21.12927 -20.83089 -20.08389 -19.05341 -18.71800 -18.09975 -18.02338 -17.96441 -17.26515 -17.00750 -16.66658 -16.55473 -16.19314 -15.91847 -15.20596 -15.10788 -14.46360 -14.28857 -13.94687 -13.56908 -13.40060 -13.21905 -12.89044 -12.77664 -12.73920 -12.45029 -12.40290 -12.32652 -12.06061 -11.76933 -11.23403 -10.90349 -10.40577 -10.35758 -10.04613 -9.36868 -8.09879 -6.17627 -1.45676 -0.58385 0.01253 0.12571 1.37571 1.42573 1.50494 1.69037 2.32030 2.42741 2.57542 2.74909 3.09850 3.20746 3.29089 3.48729 3.62092 4.00032 4.08098 4.17039 4.25097 4.33011 4.48630 4.53616 4.61801 4.73597 4.96100 4.99113 5.19203 5.25280 5.44491 5.62703 5.76414 5.81122 5.94357 6.41541 6.43570 6.85760 7.49736 8.98174 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.004586 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.468075 B = 6103.698250 C = 6967.897055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.030 3.970 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.486 4.486 8 H 0.048 0.952 9 C 0.013 3.987 10 C 0.109 3.891 11 N -0.605 5.605 12 C 0.118 3.882 13 C 0.086 3.914 14 F -0.119 7.119 15 C -0.058 4.058 16 C -0.040 4.040 17 N 0.039 4.961 18 O -0.154 6.154 19 O -0.177 6.177 20 C -0.048 4.048 21 C 0.072 3.928 22 F -0.111 7.111 23 C -0.187 4.187 24 C -0.152 4.152 25 H 0.257 0.743 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.374 0.626 29 H 0.184 0.816 30 H 0.195 0.805 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 -10.612 9.582 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.170 4.170 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.524 4.524 8 H 0.066 0.934 9 C 0.012 3.988 10 C -0.015 4.015 11 N -0.226 5.226 12 C 0.011 3.989 13 C 0.062 3.938 14 F -0.097 7.097 15 C -0.078 4.078 16 C -0.125 4.125 17 N 0.557 4.443 18 O -0.372 6.372 19 O -0.388 6.388 20 C -0.068 4.068 21 C 0.048 3.952 22 F -0.090 7.090 23 C -0.224 4.224 24 C -0.190 4.190 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.198 0.802 29 H 0.201 0.799 30 H 0.212 0.788 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.615 -9.597 8.817 13.292 hybrid contribution 0.036 0.604 -0.249 0.654 sum 2.650 -8.993 8.568 12.701 Atomic orbital electron populations 1.70078 1.06693 1.26694 1.50888 1.25488 0.95414 1.01304 0.94790 0.85833 0.79369 0.81133 0.77261 1.19535 1.20970 1.21184 1.20512 0.92265 0.89877 1.49736 0.93359 1.18887 0.99686 0.93780 0.86457 1.21733 0.86462 0.98555 0.94798 1.56974 1.21324 1.45248 0.99028 1.19594 0.94779 0.91078 0.93425 1.16612 1.03413 0.82611 0.91120 1.91631 1.89092 1.41600 1.87379 1.20815 0.97316 0.96118 0.93580 1.20025 1.12108 0.97868 0.82493 1.43381 0.98061 1.00051 1.02783 1.94532 1.54659 1.10653 1.77329 1.94572 1.41475 1.45831 1.56922 1.20855 0.94331 1.01433 0.90186 1.16691 1.03080 0.85957 0.89520 1.91575 1.79115 1.65388 1.72908 1.23055 0.99018 0.96201 1.04099 1.22406 0.92043 1.01673 1.02907 0.93354 0.91216 0.94051 0.80168 0.79917 0.78767 0.90406 0.88713 0.90666 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.55 12.65 21.45 0.27 -49.28 16 2 C 0.03 1.59 5.43 84.66 0.46 2.05 16 3 Si 0.94 42.82 29.54 68.60 2.03 44.85 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.49 -24.88 8.72 25.60 0.22 -24.66 16 8 H 0.05 2.53 7.82 -2.91 -0.02 2.51 16 9 C 0.01 0.56 1.63 -52.93 -0.09 0.47 16 10 C 0.11 4.22 5.24 86.30 0.45 4.67 16 11 N -0.61 -20.18 6.36 -338.12 -2.15 -22.33 16 12 C 0.12 3.30 5.78 38.19 0.22 3.52 16 13 C 0.09 2.46 6.96 22.47 0.16 2.62 16 14 F -0.12 -4.32 15.11 44.97 0.68 -3.64 16 15 C -0.06 -1.33 9.53 22.30 0.21 -1.12 16 16 C -0.04 -0.86 6.85 36.39 0.25 -0.61 16 17 N 0.04 0.95 4.45 -46.42 -0.21 0.74 16 18 O -0.15 -3.71 18.44 18.89 0.35 -3.36 16 19 O -0.18 -4.61 18.44 18.89 0.35 -4.27 16 20 C -0.05 -0.89 9.53 22.30 0.21 -0.68 16 21 C 0.07 1.57 7.29 22.47 0.16 1.74 16 22 F -0.11 -2.37 16.26 44.97 0.73 -1.63 16 23 C -0.19 -6.99 9.96 30.62 0.30 -6.68 16 24 C -0.15 -6.52 9.15 30.62 0.28 -6.24 16 25 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 26 H 0.07 3.10 5.96 -2.39 -0.01 3.08 16 27 H 0.04 1.41 8.10 -2.39 -0.02 1.39 16 28 H 0.37 11.03 7.71 -89.69 -0.69 10.34 16 29 H 0.18 3.67 7.60 -2.91 -0.02 3.65 16 30 H 0.20 2.62 7.60 -2.91 -0.02 2.60 16 31 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 34 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -56.94 314.32 5.38 -51.56 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.48 Total: 12.26 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 2.85 Total: -24.91 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -2.09 Total: -70.86 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.70 Total: -7.63 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 1.41 Total: -5.27 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -56.94 5.38 -51.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362361663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.883 kcal (2) G-P(sol) polarization free energy of solvation -56.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds