Wall clock time and date at job start Tue Mar 31 2020 08:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00167 * 2 1 4 4 H 1.48493 * 109.47393 * 269.99954 * 3 2 1 5 5 H 1.48496 * 109.46958 * 30.00598 * 3 2 1 6 6 H 1.48502 * 109.46786 * 150.00202 * 3 2 1 7 7 C 1.38819 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99596 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64777 * 0.02562 * 9 7 2 11 11 C 1.54918 * 104.82990 * 155.84070 * 10 9 7 12 12 C 1.55157 * 101.58249 * 37.00802 * 11 10 9 13 13 H 1.09005 * 110.71605 * 83.03618 * 12 11 10 14 14 C 1.52993 * 110.72333 * 206.13659 * 12 11 10 15 15 N 1.46500 * 109.47269 * 185.00294 * 14 12 11 16 16 C 1.34779 * 119.99765 * 179.97438 * 15 14 12 17 17 O 1.21717 * 119.99925 * 0.02562 * 16 15 14 18 18 C 1.46522 * 119.99923 * 179.97438 * 16 15 14 19 19 C 1.36612 * 125.98068 * 179.97438 * 18 16 15 20 20 C 1.40250 * 106.73756 * 180.02562 * 19 18 16 21 21 C 1.35362 * 107.11756 * 0.02562 * 20 19 18 22 22 Cl 1.73605 * 125.63191 * 179.97438 * 21 20 19 23 23 O 1.33947 * 108.73716 * 359.97438 * 21 20 19 24 24 C 1.47025 * 125.64493 * 179.97438 * 9 7 2 25 25 H 0.97001 * 119.99697 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.36940 * 37.00383 * 10 9 7 27 27 H 1.09001 * 110.36694 * 274.67413 * 10 9 7 28 28 H 1.09005 * 111.00272 * 278.93748 * 11 10 9 29 29 H 1.08999 * 111.03847 * 155.09982 * 11 10 9 30 30 H 1.09001 * 109.47122 * 64.99484 * 14 12 11 31 31 H 1.09002 * 109.47092 * 305.00319 * 14 12 11 32 32 H 0.96995 * 119.99926 * 0.02562 * 15 14 12 33 33 H 1.08004 * 126.63062 * 0.06110 * 19 18 16 34 34 H 1.08003 * 126.43620 * 180.02562 * 20 19 18 35 35 H 1.08998 * 109.88186 * 61.67833 * 24 9 7 36 36 H 1.08996 * 109.87944 * 300.50654 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1417 -2.5331 -0.0005 11 6 -0.4019 -3.9319 -0.6135 12 6 0.7782 -4.7525 -0.0291 13 1 0.5444 -5.1014 0.9768 14 6 1.1229 -5.9306 -0.9422 15 7 2.1565 -6.7533 -0.3088 16 6 2.6193 -7.8536 -0.9346 17 8 2.1788 -8.1635 -2.0261 18 6 3.6534 -8.6761 -0.3014 19 6 4.2074 -9.8108 -0.8228 20 6 5.1468 -10.2683 0.1127 21 6 5.1260 -9.4035 1.1538 22 17 6.1056 -9.5170 2.5826 23 8 4.2248 -8.4457 0.8997 24 6 1.9317 -3.7275 -0.0016 25 1 -0.4850 0.8401 0.0004 26 1 -0.5995 -1.7583 -0.6156 27 1 -0.5274 -2.4875 1.0179 28 1 -0.3522 -3.8969 -1.7018 29 1 -1.3592 -4.3329 -0.2808 30 1 1.4917 -5.5549 -1.8966 31 1 0.2305 -6.5338 -1.1096 32 1 2.5072 -6.5065 0.5612 33 1 3.9686 -10.2669 -1.7722 34 1 5.7696 -11.1458 0.0198 35 1 2.5282 -3.8651 0.9002 36 1 2.5579 -3.8502 -0.8853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028409721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:58 Heat of formation + Delta-G solvation = 3.968287 kcal Electronic energy + Delta-G solvation = -21108.350813 eV Core-core repulsion = 17621.216465 eV Total energy + Delta-G solvation = -3487.134348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.087 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.12827 -39.65142 -37.69547 -37.46203 -34.90066 -33.59278 -32.58260 -30.53740 -29.56620 -28.20282 -25.70829 -24.14245 -22.74422 -22.31732 -20.78652 -20.08207 -19.81776 -18.70929 -17.14044 -16.98076 -16.77976 -16.13405 -15.44554 -14.83897 -14.55800 -14.27373 -13.89937 -13.65041 -13.48959 -13.44841 -12.95040 -12.55922 -12.53271 -11.85300 -11.81755 -11.76333 -11.54583 -10.97461 -10.81490 -10.65109 -10.51828 -10.33094 -10.11822 -10.03364 -9.81705 -9.54963 -9.25409 -8.88628 -8.66341 -6.85084 -5.66825 -3.08555 0.57572 0.66509 1.80901 2.65705 2.94421 3.20083 3.39481 3.44421 3.46333 4.35603 4.46845 4.53033 4.98878 5.02943 5.15324 5.19355 5.34717 5.36525 5.50330 5.65336 5.77666 5.82987 5.98336 6.04259 6.16208 6.30111 6.32154 6.53154 6.55302 6.68035 6.87119 7.31710 7.49390 7.61484 7.83815 7.90567 8.34936 9.20835 9.81649 10.46204 11.37187 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.003033 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.200711 B = 9229.848390 C =10216.036222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.116 4.116 13 H 0.078 0.922 14 C 0.130 3.870 15 N -0.710 5.710 16 C 0.600 3.400 17 O -0.518 6.518 18 C -0.053 4.053 19 C -0.116 4.116 20 C -0.185 4.185 21 C 0.048 3.952 22 Cl 0.034 6.966 23 O -0.154 6.154 24 C 0.141 3.859 25 H 0.252 0.748 26 H 0.108 0.892 27 H 0.012 0.988 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.407 0.593 33 H 0.171 0.829 34 H 0.168 0.832 35 H 0.019 0.981 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.757 -21.215 2.322 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.096 0.904 14 C 0.007 3.993 15 N -0.360 5.360 16 C 0.385 3.615 17 O -0.396 6.396 18 C -0.105 4.105 19 C -0.137 4.137 20 C -0.205 4.205 21 C -0.031 4.031 22 Cl 0.063 6.937 23 O -0.051 6.051 24 C 0.014 3.986 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.030 0.970 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.242 0.758 33 H 0.189 0.811 34 H 0.186 0.814 35 H 0.037 0.963 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.389 -20.915 1.869 22.260 hybrid contribution 0.923 0.813 0.757 1.444 sum 8.312 -20.102 2.626 21.911 Atomic orbital electron populations 1.69792 1.04893 1.24791 1.57624 1.24791 0.95741 0.97738 1.02402 0.86066 0.78516 0.83283 0.77602 1.21556 1.21635 1.20748 1.19081 0.90512 0.82486 1.43099 0.90528 1.44503 1.01991 0.99703 1.86862 1.21944 0.84665 0.92495 0.98216 1.23015 0.95431 0.98569 1.00375 1.22466 0.98491 0.93893 0.98651 0.90410 1.21613 0.89818 0.91074 0.96748 1.46049 1.41178 1.25562 1.23166 1.16450 0.80160 0.80373 0.84541 1.90910 1.58291 1.71112 1.19299 1.22317 1.01917 1.00791 0.85513 1.21944 0.95889 0.94636 1.01222 1.21544 1.03639 1.02427 0.92854 1.22862 0.94880 0.91951 0.93376 1.98460 1.63885 1.96604 1.34742 1.84008 1.43008 1.44149 1.33938 1.21346 0.93412 0.85993 0.97809 0.93711 0.87467 0.96979 0.91736 0.92023 0.90605 0.91013 0.75758 0.81148 0.81443 0.96342 0.95750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.09 55.49 0.56 -26.23 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.38 3.39 -170.06 -0.58 -15.96 16 10 C 0.15 3.62 5.89 -2.52 -0.01 3.60 16 11 C -0.13 -2.44 6.53 -24.58 -0.16 -2.60 16 12 C -0.12 -1.88 2.96 -88.79 -0.26 -2.15 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 14 C 0.13 1.85 5.02 -4.05 -0.02 1.83 16 15 N -0.71 -9.26 5.47 -61.67 -0.34 -9.60 16 16 C 0.60 8.23 7.78 -12.92 -0.10 8.13 16 17 O -0.52 -8.45 16.86 5.17 0.09 -8.37 16 18 C -0.05 -0.62 7.13 -36.83 -0.26 -0.89 16 19 C -0.12 -1.14 10.62 -39.41 -0.42 -1.56 16 20 C -0.18 -1.53 10.84 -39.85 -0.43 -1.97 16 21 C 0.05 0.46 7.93 29.71 0.24 0.70 16 22 Cl 0.03 0.28 29.30 -51.86 -1.52 -1.24 16 23 O -0.15 -1.75 10.40 4.75 0.05 -1.70 16 24 C 0.14 2.84 6.75 -3.06 -0.02 2.82 16 25 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.17 7.93 -51.93 -0.41 0.76 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.41 4.81 8.22 -40.82 -0.34 4.47 16 33 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.17 0.90 8.06 -52.48 -0.42 0.47 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.50 7.68 -51.93 -0.40 0.10 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -31.25 324.32 -7.96 -39.21 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.37 Total: 0.84 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.71 Total: 1.12 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.35 Total: -51.79 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.14 Total: -10.07 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.52 Total: -1.24 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.25 -7.96 -39.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028409721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.177 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds