Wall clock time and date at job start Tue Mar 31 2020 08:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86797 * 119.99755 * 2 1 4 4 H 1.48503 * 109.47028 * 269.99894 * 3 2 1 5 5 H 1.48498 * 109.47118 * 30.00144 * 3 2 1 6 6 H 1.48508 * 109.46973 * 150.00146 * 3 2 1 7 7 C 1.38626 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00207 * 359.97438 * 7 2 1 9 9 O 1.34814 * 119.99648 * 180.27448 * 7 2 1 10 10 C 1.35678 * 116.99975 * 174.65335 * 9 7 2 11 11 C 1.38707 * 120.11600 * 5.59548 * 10 9 7 12 12 C 1.38346 * 120.02171 * 179.76828 * 11 10 9 13 13 F 1.35097 * 119.86221 * 180.28042 * 12 11 10 14 14 C 1.38671 * 120.26815 * 0.50951 * 12 11 10 15 15 C 1.37982 * 120.24263 * 359.74291 * 14 12 11 16 16 C 1.39280 * 119.97338 * 0.02562 * 15 14 12 17 17 C 1.48308 * 120.13703 * 179.97438 * 16 15 14 18 18 C 1.41454 * 119.99456 * 129.74687 * 17 16 15 19 19 C 1.35766 * 119.59758 * 179.72075 * 18 17 16 20 20 C 1.41047 * 119.51014 * 0.52530 * 19 18 17 21 21 N 1.32581 * 132.14794 * 179.74005 * 20 19 18 22 22 C 1.33508 * 109.18496 * 180.02562 * 21 20 19 23 23 C 1.35102 * 108.62209 * 359.97438 * 22 21 20 24 24 N 1.36883 * 107.17278 * 0.02562 * 23 22 21 25 25 C 1.36154 * 119.98741 * 310.01492 * 17 16 15 26 26 H 0.96990 * 119.99959 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99559 * 0.02721 * 11 10 9 28 28 H 1.07998 * 119.87124 * 179.72611 * 14 12 11 29 29 H 1.08005 * 120.00995 * 179.97438 * 15 14 12 30 30 H 1.08004 * 120.19411 * 359.97438 * 18 17 16 31 31 H 1.08007 * 120.24795 * 180.24841 * 19 18 17 32 32 H 1.07997 * 125.68558 * 180.02562 * 22 21 20 33 33 H 1.08003 * 126.40866 * 180.02562 * 23 22 21 34 34 H 1.08002 * 119.75858 * 0.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5474 1.4402 0.7001 7 6 2.0089 -1.2005 -0.0005 8 1 1.4690 -2.1358 -0.0005 9 8 3.3570 -1.2005 0.0051 10 6 3.9726 -2.4044 0.1168 11 6 3.2247 -3.5725 0.1022 12 6 3.8548 -4.7993 0.2115 13 9 3.1237 -5.9352 0.1912 14 6 5.2332 -4.8675 0.3466 15 6 5.9875 -3.7122 0.3677 16 6 5.3640 -2.4720 0.2536 17 6 6.1711 -1.2280 0.2764 18 6 5.9928 -0.2508 -0.7307 19 6 6.7319 0.8876 -0.6989 20 6 7.6756 1.0746 0.3326 21 7 8.5166 2.0640 0.6004 22 6 9.2092 1.7650 1.7019 23 6 8.8038 0.5573 2.1519 24 7 7.8348 0.1109 1.2944 25 6 7.0874 -1.0293 1.2636 26 1 -0.4849 0.8400 0.0004 27 1 2.1505 -3.5246 0.0013 28 1 5.7181 -5.8284 0.4359 29 1 7.0608 -3.7697 0.4734 30 1 5.2701 -0.4076 -1.5179 31 1 6.6014 1.6425 -1.4602 32 1 9.9666 2.3855 2.1576 33 1 9.1749 0.0409 3.0248 34 1 7.2235 -1.7803 2.0278 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240217536.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:00 Heat of formation + Delta-G solvation = 46.040710 kcal Electronic energy + Delta-G solvation = -22945.654655 eV Core-core repulsion = 19339.317249 eV Total energy + Delta-G solvation = -3606.337407 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.50907 -42.56912 -39.64289 -37.39341 -36.40728 -33.45223 -32.65274 -31.69701 -29.77382 -28.63684 -27.97930 -25.56870 -23.89934 -22.76604 -21.88569 -21.60651 -21.06027 -18.36700 -18.04269 -17.49343 -16.71353 -15.97375 -15.75334 -15.58537 -15.37762 -15.21516 -14.53078 -14.32147 -14.21121 -14.00100 -13.75173 -13.51113 -13.36680 -12.99168 -12.49472 -12.31863 -11.85983 -11.53451 -11.40619 -11.29112 -10.99853 -10.90231 -10.76005 -10.40282 -9.99515 -9.77664 -9.11118 -8.88083 -8.25413 -7.80996 -7.49766 -6.65803 -4.33958 0.86031 1.30421 1.75805 1.83519 2.75944 3.01676 3.09657 3.14092 3.28619 3.70723 4.02683 4.04550 4.37564 4.42311 4.59259 4.73935 4.79046 4.86884 5.02164 5.19097 5.28335 5.39464 5.48438 5.56403 5.62514 5.80782 6.01971 6.08281 6.18313 6.33403 6.49346 6.58543 6.62819 6.68777 6.75751 6.81931 7.20618 7.25900 7.49559 7.74376 8.00756 8.66783 9.21123 10.40085 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.011274 B = 0.006795 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.918784 B = 4119.864779 C = 6287.733644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.072 3.928 3 Si 0.896 3.104 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.396 4.396 8 H 0.111 0.889 9 O -0.190 6.190 10 C 0.198 3.802 11 C -0.257 4.257 12 C 0.151 3.849 13 F -0.146 7.146 14 C -0.241 4.241 15 C -0.031 4.031 16 C -0.143 4.143 17 C -0.018 4.018 18 C -0.067 4.067 19 C -0.093 4.093 20 C 0.225 3.775 21 N -0.504 5.504 22 C 0.025 3.975 23 C -0.111 4.111 24 N -0.354 5.354 25 C 0.040 3.960 26 H 0.284 0.716 27 H 0.149 0.851 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.176 0.824 33 H 0.178 0.822 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.497 -3.284 2.016 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.471 4.471 8 H 0.128 0.872 9 O -0.093 6.093 10 C 0.142 3.858 11 C -0.277 4.277 12 C 0.132 3.868 13 F -0.125 7.125 14 C -0.261 4.261 15 C -0.049 4.049 16 C -0.145 4.145 17 C -0.021 4.021 18 C -0.091 4.091 19 C -0.113 4.113 20 C -0.018 4.018 21 N -0.224 5.224 22 C -0.127 4.127 23 C -0.242 4.242 24 N -0.024 5.024 25 C -0.082 4.082 26 H 0.094 0.906 27 H 0.167 0.833 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.193 0.807 33 H 0.195 0.805 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 13.432 -2.226 1.605 13.709 hybrid contribution -0.229 -0.350 0.644 0.768 sum 13.203 -2.575 2.249 13.638 Atomic orbital electron populations 1.69637 1.05666 1.29075 1.45533 1.24477 0.95016 0.98957 0.94949 0.86304 0.80754 0.81288 0.79585 1.19243 1.20508 1.17758 1.20821 0.76422 0.96928 1.52879 0.87210 1.83597 1.22997 1.25023 1.77661 1.18619 0.90078 0.85233 0.91826 1.21124 1.02411 0.90372 1.13803 1.17558 0.89072 0.81310 0.98889 1.91448 1.77850 1.49471 1.93704 1.20522 0.91793 0.99149 1.14635 1.20531 0.98743 0.89902 0.95756 1.17497 0.89714 0.91448 1.15875 1.18014 0.94814 0.95146 0.94103 1.21255 0.97519 0.92001 0.98297 1.20162 0.94962 0.98972 0.97198 1.21002 1.00544 0.86884 0.93387 1.70726 1.09775 1.24780 1.17165 1.22408 1.01076 0.94822 0.94375 1.22576 0.99526 1.00630 1.01466 1.42700 1.25243 1.14335 1.20140 1.21561 0.95903 0.89307 1.01468 0.90563 0.83315 0.85711 0.85542 0.83583 0.83298 0.80651 0.80465 0.82008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.47 13.96 55.48 0.77 -22.70 16 2 C 0.07 1.88 5.49 -17.52 -0.10 1.79 16 3 Si 0.90 20.41 28.62 -169.99 -4.86 15.54 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.25 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.40 -10.15 9.94 30.88 0.31 -9.84 16 8 H 0.11 2.90 5.44 -52.49 -0.29 2.61 16 9 O -0.19 -4.40 6.97 0.32 0.00 -4.40 16 10 C 0.20 4.00 6.57 -38.76 -0.25 3.74 16 11 C -0.26 -5.07 9.14 -39.37 -0.36 -5.43 16 12 C 0.15 2.63 7.29 -39.38 -0.29 2.34 16 13 F -0.15 -2.53 17.26 2.25 0.04 -2.49 16 14 C -0.24 -3.57 10.01 -39.52 -0.40 -3.97 16 15 C -0.03 -0.44 9.45 -39.29 -0.37 -0.81 16 16 C -0.14 -2.42 5.48 -104.72 -0.57 -3.00 16 17 C -0.02 -0.29 5.23 -105.28 -0.55 -0.85 16 18 C -0.07 -1.12 8.80 -39.24 -0.35 -1.46 16 19 C -0.09 -1.52 10.09 -39.40 -0.40 -1.91 16 20 C 0.23 3.87 7.80 -155.98 -1.22 2.65 16 21 N -0.50 -8.64 11.32 -12.75 -0.14 -8.78 16 22 C 0.03 0.35 11.83 -17.94 -0.21 0.13 16 23 C -0.11 -1.43 11.76 -16.41 -0.19 -1.62 16 24 N -0.35 -5.45 2.94 -62.33 -0.18 -5.64 16 25 C 0.04 0.58 10.37 -16.29 -0.17 0.41 16 26 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.15 3.13 5.64 -52.49 -0.30 2.83 16 28 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.13 1.39 8.03 -52.48 -0.42 0.97 16 30 H 0.15 2.41 7.74 -52.48 -0.41 2.00 16 31 H 0.15 2.12 8.06 -52.48 -0.42 1.70 16 32 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.18 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.16 1.87 7.98 -52.49 -0.42 1.45 16 LS Contribution 307.00 15.07 4.63 4.63 Total: -1.00 -29.02 307.00 -7.52 -36.54 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -2.65 Total: 5.11 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -5.12 Total: -17.81 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.45 Total: -37.12 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: 0.00 Total: -4.40 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.86 Total: 15.54 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.02 -7.52 -36.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240217536.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.578 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds