Wall clock time and date at job start Tue Mar 31 2020 08:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86796 * 119.99835 * 2 1 4 4 H 1.48499 * 109.47445 * 269.99825 * 3 2 1 5 5 H 1.48499 * 109.47075 * 30.00294 * 3 2 1 6 6 H 1.48509 * 109.46966 * 149.99854 * 3 2 1 7 7 C 1.40047 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99822 * 0.02562 * 7 2 1 10 10 O 1.21683 * 120.00202 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00149 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00245 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47214 * 179.97438 * 12 11 9 14 14 O 1.21292 * 120.00078 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00265 * 179.97438 * 13 12 11 16 16 C 1.39612 * 120.00292 * 185.52067 * 15 13 12 17 17 C 1.37817 * 120.29694 * 24.87275 * 16 15 13 18 18 C 1.39168 * 120.75143 * 179.97438 * 17 16 15 19 19 C 1.36163 * 121.08012 * 0.06606 * 18 17 16 20 20 C 1.40510 * 119.95487 * 359.95469 * 19 18 17 21 21 C 1.40582 * 121.20531 * 180.02562 * 20 19 18 22 22 C 1.36088 * 119.66096 * 179.97438 * 21 20 19 23 23 C 1.39357 * 120.97872 * 0.02562 * 22 21 20 24 24 C 1.36149 * 120.95820 * 359.97438 * 23 22 21 25 25 C 1.40369 * 119.67184 * 359.97438 * 24 23 22 26 26 H 0.96999 * 119.99899 * 359.97438 * 1 2 3 27 27 H 0.97004 * 119.99290 * 359.97438 * 11 9 7 28 28 H 1.09003 * 109.47259 * 59.99677 * 12 11 9 29 29 H 1.09001 * 109.46688 * 299.99320 * 12 11 9 30 30 H 0.96998 * 119.99556 * 5.51818 * 15 13 12 31 31 H 1.08009 * 119.62764 * 0.04818 * 17 16 15 32 32 H 1.08003 * 119.45917 * 180.02562 * 18 17 16 33 33 H 1.08003 * 120.01823 * 180.23340 * 19 18 17 34 34 H 1.08005 * 120.16513 * 359.96112 * 21 20 19 35 35 H 1.08001 * 119.51806 * 179.97438 * 22 21 20 36 36 H 1.07995 * 119.52272 * 179.97438 * 23 22 21 37 37 H 1.08007 * 120.16386 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4381 2.6526 0.7001 6 1 3.5383 1.4402 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0016 12 6 1.2165 -4.9164 0.0010 13 6 2.1958 -6.0619 0.0018 14 8 3.3883 -5.8402 0.0032 15 7 1.7467 -7.3325 0.0020 16 6 2.6486 -8.3918 0.1190 17 6 3.8703 -8.2007 0.7275 18 6 4.7762 -9.2500 0.8497 19 6 4.4831 -10.4910 0.3720 20 6 3.2484 -10.7276 -0.2555 21 6 2.9184 -11.9986 -0.7577 22 6 1.7133 -12.1928 -1.3594 23 6 0.7986 -11.1491 -1.4867 24 6 1.0845 -9.9055 -1.0121 25 6 2.3174 -9.6677 -0.3845 26 1 -0.4850 0.8400 0.0004 27 1 2.9190 -3.6476 0.0020 28 1 0.5909 -4.9744 -0.8897 29 1 0.5890 -4.9740 0.8904 30 1 0.7967 -7.5111 -0.0792 31 1 4.1271 -7.2258 1.1150 32 1 5.7276 -9.0771 1.3307 33 1 5.1975 -11.2939 0.4795 34 1 3.6178 -12.8165 -0.6666 35 1 1.4623 -13.1700 -1.7447 36 1 -0.1508 -11.3294 -1.9687 37 1 0.3660 -9.1060 -1.1173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153717618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:32 Heat of formation + Delta-G solvation = -24.530935 kcal Electronic energy + Delta-G solvation = -22272.732698 eV Core-core repulsion = 18786.795381 eV Total energy + Delta-G solvation = -3485.937318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.08275 -39.57706 -37.23279 -36.46286 -35.14589 -33.20396 -32.27535 -31.78025 -30.45848 -29.15479 -27.53370 -25.52623 -23.63713 -23.35028 -22.11432 -20.41259 -19.68530 -18.40533 -18.05535 -17.29439 -16.42761 -16.07238 -15.88768 -15.52345 -15.25346 -14.61137 -14.31720 -14.11315 -13.95840 -13.85793 -13.58161 -13.23690 -13.13136 -12.81114 -12.29038 -12.14307 -11.76569 -11.49421 -11.33758 -11.18957 -11.17140 -10.95151 -10.77052 -10.48299 -10.25479 -9.73179 -9.43750 -8.87845 -8.77652 -7.72166 -7.68612 -7.60509 -6.22831 -4.67194 0.35243 0.85163 1.77734 2.57531 2.85471 2.94378 3.14428 3.21337 3.25486 3.96647 4.10038 4.43999 4.53944 4.57604 4.65137 4.72222 4.82609 4.88091 5.01458 5.12278 5.21173 5.33036 5.51296 5.63164 5.68567 5.70709 5.88585 5.95025 6.02274 6.12745 6.23128 6.27777 6.30575 6.47094 6.66356 6.91022 7.21535 7.41990 7.89030 7.94884 8.06174 8.30046 8.99683 9.45771 10.54000 10.71932 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.033658 B = 0.002724 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.697283 B =10274.911866 C =10975.628901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.556 3.444 10 O -0.583 6.583 11 N -0.757 5.757 12 C 0.117 3.883 13 C 0.510 3.490 14 O -0.510 6.510 15 N -0.670 5.670 16 C 0.164 3.836 17 C -0.139 4.139 18 C -0.086 4.086 19 C -0.137 4.137 20 C -0.033 4.033 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.104 4.104 25 C -0.070 4.070 26 H 0.269 0.731 27 H 0.393 0.607 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.413 0.587 31 H 0.149 0.851 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.581 -23.208 -0.476 23.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.088 0.912 9 C 0.361 3.639 10 O -0.466 6.466 11 N -0.417 5.417 12 C -0.011 4.011 13 C 0.300 3.700 14 O -0.384 6.384 15 N -0.314 5.314 16 C 0.068 3.932 17 C -0.160 4.160 18 C -0.104 4.104 19 C -0.156 4.156 20 C -0.033 4.033 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.139 4.139 24 C -0.122 4.122 25 C -0.072 4.072 26 H 0.080 0.920 27 H 0.228 0.772 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.249 0.751 31 H 0.167 0.833 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.306 -22.829 -0.464 23.236 hybrid contribution 0.358 0.580 -0.124 0.693 sum 4.664 -22.249 -0.588 22.741 Atomic orbital electron populations 1.70016 1.07077 1.27381 1.35198 1.25716 0.94660 1.00364 0.92544 0.86329 0.80172 0.81135 0.78888 1.19689 1.20432 1.18818 1.20857 0.93774 0.89030 1.54071 0.91175 1.18253 0.87169 0.82113 0.76393 1.90596 1.14010 1.86722 1.55251 1.46047 1.09657 1.03026 1.82945 1.20659 0.93232 0.83826 1.03414 1.21399 0.90565 0.83620 0.74463 1.90636 1.16894 1.84058 1.46828 1.43522 1.10506 1.04880 1.72473 1.17720 0.91808 0.86515 0.97117 1.21407 0.93390 1.01275 0.99924 1.20761 0.99149 0.92287 0.98228 1.20923 0.96069 0.97671 1.00935 1.17879 0.93955 0.92990 0.98509 1.21013 0.97229 0.95811 0.98526 1.20845 0.94127 0.99109 0.99308 1.20798 0.99772 0.92909 1.00391 1.20864 0.95569 0.97579 0.98227 1.17801 0.95685 0.92530 1.01143 0.92044 0.77193 0.89872 0.89668 0.75068 0.83310 0.85612 0.85675 0.85519 0.86027 0.85895 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.86 11.83 55.55 0.66 -22.20 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 20.20 29.56 -169.99 -5.02 15.18 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.54 -15.38 9.54 -35.63 -0.34 -15.72 16 8 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 9 C 0.56 15.78 7.75 -12.98 -0.10 15.68 16 10 O -0.58 -18.42 15.02 5.20 0.08 -18.35 16 11 N -0.76 -17.33 5.52 -62.90 -0.35 -17.68 16 12 C 0.12 2.13 6.16 -5.20 -0.03 2.09 16 13 C 0.51 8.12 7.70 -10.99 -0.08 8.03 16 14 O -0.51 -9.41 12.84 5.55 0.07 -9.34 16 15 N -0.67 -8.42 5.16 -9.64 -0.05 -8.47 16 16 C 0.16 2.17 6.44 -83.38 -0.54 1.63 16 17 C -0.14 -1.89 8.70 -39.39 -0.34 -2.24 16 18 C -0.09 -0.96 9.94 -39.98 -0.40 -1.36 16 19 C -0.14 -1.40 9.75 -39.47 -0.38 -1.78 16 20 C -0.03 -0.36 5.74 -106.85 -0.61 -0.97 16 21 C -0.11 -0.96 9.77 -39.47 -0.39 -1.34 16 22 C -0.12 -0.95 9.95 -39.94 -0.40 -1.35 16 23 C -0.12 -1.04 9.95 -39.92 -0.40 -1.44 16 24 C -0.10 -1.04 9.46 -39.53 -0.37 -1.41 16 25 C -0.07 -0.83 5.75 -106.70 -0.61 -1.44 16 26 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 27 H 0.39 8.64 7.42 -40.82 -0.30 8.34 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.41 3.93 7.25 -40.82 -0.30 3.64 16 31 H 0.15 2.26 5.75 -52.48 -0.30 1.96 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.12 1.00 6.70 -52.48 -0.35 0.65 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -35.81 323.18 -8.60 -44.41 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -3.76 Total: 10.87 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -5.10 Total: 0.71 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.26 Total: -48.35 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: 0.15 Total: -27.69 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.81 -8.60 -44.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153717618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.874 kcal (2) G-P(sol) polarization free energy of solvation -35.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds