Wall clock time and date at job start Tue Mar 31 2020 07:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37626 * 120.00799 * 2 1 4 4 C 1.39573 * 120.01855 * 180.27841 * 3 2 1 5 5 C 1.48120 * 119.97609 * 179.76268 * 4 3 2 6 6 C 1.39393 * 120.16641 * 309.72345 * 5 4 3 7 7 C 1.37966 * 119.93619 * 180.02562 * 6 5 4 8 8 C 1.38483 * 120.28538 * 359.97438 * 7 6 5 9 9 C 1.38095 * 120.34556 * 0.02562 * 8 7 6 10 10 C 1.38770 * 120.05584 * 0.02562 * 9 8 7 11 11 O 1.35626 * 120.14237 * 179.97438 * 10 9 8 12 12 C 1.34799 * 117.00237 * 5.66770 * 11 10 9 13 13 H 1.08001 * 119.99916 * 354.90986 * 12 11 10 14 14 C 1.38669 * 120.00308 * 174.90333 * 12 11 10 15 15 N 1.31540 * 119.99846 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00086 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47380 * 90.00137 * 16 14 12 18 18 H 1.48501 * 109.47057 * 210.00178 * 16 14 12 19 19 H 1.48503 * 109.46965 * 329.99818 * 16 14 12 20 20 C 1.39620 * 120.05285 * 359.48265 * 4 3 2 21 21 C 1.37581 * 120.02112 * 0.27682 * 20 4 3 22 22 C 1.39776 * 120.01214 * 179.78442 * 2 1 3 23 23 C 1.47539 * 120.02596 * 359.97438 * 22 2 1 24 24 O 1.21496 * 120.00352 * 353.48401 * 23 22 2 25 25 O 1.34751 * 120.00005 * 173.48743 * 23 22 2 26 26 H 1.08994 * 109.46994 * 263.18110 * 1 2 3 27 27 H 1.09003 * 109.47074 * 23.18737 * 1 2 3 28 28 H 1.09006 * 109.46853 * 143.18015 * 1 2 3 29 29 H 1.07994 * 119.98824 * 0.03526 * 3 2 1 30 30 H 1.07994 * 120.02948 * 359.97438 * 6 5 4 31 31 H 1.07994 * 119.85431 * 180.02562 * 7 6 5 32 32 H 1.07996 * 119.82947 * 179.74460 * 8 7 6 33 33 H 1.07999 * 119.97327 * 179.97438 * 9 8 7 34 34 H 0.97006 * 120.00131 * 179.97438 * 15 14 12 35 35 H 1.07996 * 119.99280 * 180.26160 * 20 4 3 36 36 H 1.07998 * 120.01209 * 179.97438 * 21 20 4 37 37 H 0.96695 * 116.99643 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1954 1.1918 0.0000 4 6 3.5911 1.1920 -0.0059 5 6 4.3309 2.4753 -0.0112 6 6 4.0096 3.4652 -0.9385 7 6 4.7021 4.6584 -0.9395 8 6 5.7161 4.8783 -0.0222 9 6 6.0441 3.9056 0.9016 10 6 5.3575 2.6998 0.9147 11 8 5.6785 1.7431 1.8209 12 6 6.5927 2.0685 2.7566 13 1 7.0940 3.0241 2.7124 14 6 6.8894 1.1764 3.7759 15 7 6.2784 0.0128 3.8301 16 14 8.1558 1.6277 5.0729 17 1 7.4822 2.3127 6.2052 18 1 8.8210 0.3948 5.5654 19 1 9.1710 2.5344 4.4791 20 6 4.2906 -0.0163 -0.0008 21 6 3.6044 -1.2088 0.0042 22 6 2.2062 -1.2103 0.0046 23 6 1.4694 -2.4885 0.0099 24 8 0.2603 -2.4923 0.1298 25 8 2.1373 -3.6518 -0.1180 26 1 -0.3633 -0.1220 1.0203 27 1 -0.3633 0.9447 -0.4046 28 1 -0.3633 -0.8227 -0.6159 29 1 1.6553 2.1270 0.0006 30 1 3.2199 3.2979 -1.6559 31 1 4.4519 5.4246 -1.6582 32 1 6.2561 5.8134 -0.0323 33 1 6.8361 4.0833 1.6140 34 1 6.4862 -0.6114 4.5430 35 1 5.3705 -0.0149 -0.0011 36 1 4.1456 -2.1434 0.0076 37 1 1.6115 -4.4633 -0.1085 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243215708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:37 Heat of formation + Delta-G solvation = -88.416382 kcal Electronic energy + Delta-G solvation = -23126.034588 eV Core-core repulsion = 19605.034238 eV Total energy + Delta-G solvation = -3521.000350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60934 -40.89213 -39.48836 -38.02375 -37.14747 -34.38384 -34.03654 -33.18562 -30.82516 -30.09760 -28.16663 -27.30168 -25.48657 -23.52195 -22.96886 -22.73582 -21.29463 -19.81157 -19.10467 -18.74600 -18.21568 -17.03676 -16.75142 -16.46887 -16.27504 -16.04443 -15.50720 -15.38550 -15.27548 -14.95760 -14.52277 -14.34029 -14.19017 -14.01782 -13.54483 -13.30889 -13.17219 -13.13307 -12.86895 -12.53607 -12.48794 -12.38345 -12.19506 -12.14719 -12.00377 -11.29278 -11.07601 -10.79745 -10.27403 -9.74331 -9.41532 -8.85090 -8.44919 -6.11373 -0.45042 0.42424 0.57484 0.76297 1.35315 1.43756 1.51145 1.55835 2.11802 2.16801 2.71050 2.88677 3.18000 3.48908 3.69571 3.84912 3.87128 4.12101 4.23483 4.27893 4.36685 4.49888 4.54881 4.67708 4.71992 4.81944 4.82321 4.99708 5.03833 5.14409 5.16491 5.19786 5.35245 5.49123 5.51044 5.62444 5.65500 5.74493 5.77349 5.91212 6.03772 6.22786 6.99416 7.00449 7.78826 8.75960 Molecular weight = 298.10amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.005360 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.542228 B = 5223.073116 C = 7049.401316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.023 4.023 3 C -0.132 4.132 4 C 0.020 3.980 5 C -0.157 4.157 6 C -0.054 4.054 7 C -0.192 4.192 8 C -0.064 4.064 9 C -0.249 4.249 10 C 0.128 3.872 11 O -0.208 6.208 12 C -0.415 4.415 13 H 0.100 0.900 14 C -0.015 4.015 15 N -0.908 5.908 16 Si 1.011 2.989 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.253 1.253 20 C -0.126 4.126 21 C -0.054 4.054 22 C -0.164 4.164 23 C 0.536 3.464 24 O -0.531 6.531 25 O -0.508 6.508 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.120 0.880 34 H 0.270 0.730 35 H 0.105 0.895 36 H 0.141 0.859 37 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.522 1.897 -9.152 11.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.024 4.024 3 C -0.150 4.150 4 C 0.019 3.981 5 C -0.158 4.158 6 C -0.071 4.071 7 C -0.210 4.210 8 C -0.082 4.082 9 C -0.269 4.269 10 C 0.077 3.923 11 O -0.113 6.113 12 C -0.491 4.491 13 H 0.117 0.883 14 C -0.214 4.214 15 N -0.545 5.545 16 Si 0.831 3.169 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.177 1.177 20 C -0.144 4.144 21 C -0.072 4.072 22 C -0.165 4.165 23 C 0.383 3.617 24 O -0.424 6.424 25 O -0.322 6.322 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.170 0.830 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.159 0.841 37 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -6.683 1.806 -8.968 11.329 hybrid contribution 0.749 -0.690 1.046 1.460 sum -5.934 1.116 -7.923 9.961 Atomic orbital electron populations 1.21049 0.88360 1.04035 1.03279 1.20129 0.97654 0.90807 0.93780 1.21198 0.92135 0.98355 1.03328 1.19085 0.93476 0.92232 0.93272 1.18262 0.99665 0.96292 1.01557 1.21187 0.98581 0.91660 0.95714 1.21119 0.99210 0.98390 1.02320 1.21281 0.96168 0.97965 0.92779 1.21276 1.05082 0.95410 1.05101 1.19921 0.92855 0.89239 0.90309 1.83956 1.55014 1.35514 1.36811 1.21784 1.17691 1.04699 1.04940 0.88290 1.26427 1.00498 0.94843 0.99641 1.70181 1.42457 1.08377 1.33477 0.84684 0.77003 0.78255 0.76936 1.19205 1.19824 1.17697 1.21114 0.99700 0.92314 1.01263 1.21341 0.92967 0.98562 0.94324 1.19028 0.93298 0.90854 1.13324 1.20665 0.84903 0.84519 0.71618 1.90803 1.15709 1.88075 1.47803 1.84569 1.45579 1.17382 1.84629 0.91058 0.89617 0.89637 0.83029 0.83312 0.82837 0.83698 0.86241 0.92046 0.87699 0.84118 0.70638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.94 8.69 71.24 0.62 -2.32 16 2 C -0.02 -0.76 5.91 -19.63 -0.12 -0.87 16 3 C -0.13 -4.45 9.12 22.45 0.20 -4.25 16 4 C 0.02 0.78 5.29 -20.00 -0.11 0.67 16 5 C -0.16 -6.33 5.48 -19.93 -0.11 -6.44 16 6 C -0.05 -1.68 9.51 22.48 0.21 -1.46 16 7 C -0.19 -5.40 10.03 22.26 0.22 -5.18 16 8 C -0.06 -2.03 10.03 22.29 0.22 -1.81 16 9 C -0.25 -10.33 9.16 22.36 0.20 -10.13 16 10 C 0.13 6.09 6.55 22.84 0.15 6.24 16 11 O -0.21 -11.78 8.09 -21.06 -0.17 -11.95 16 12 C -0.41 -23.26 9.49 67.92 0.64 -22.61 16 13 H 0.10 5.12 5.21 -2.91 -0.02 5.10 16 14 C -0.02 -0.84 5.49 84.84 0.47 -0.37 16 15 N -0.91 -54.07 13.67 21.62 0.30 -53.78 16 16 Si 1.01 42.08 29.55 68.60 2.03 44.11 16 17 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 20 C -0.13 -5.30 8.76 22.45 0.20 -5.10 16 21 C -0.05 -2.00 9.60 22.50 0.22 -1.79 16 22 C -0.16 -5.63 5.88 -20.07 -0.12 -5.74 16 23 C 0.54 16.25 8.19 70.28 0.58 16.83 16 24 O -0.53 -16.96 14.12 19.85 0.28 -16.68 16 25 O -0.51 -12.08 12.69 -56.61 -0.72 -12.80 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.09 1.78 8.03 -2.39 -0.02 1.76 16 28 H 0.09 2.33 5.89 -2.38 -0.01 2.32 16 29 H 0.15 4.23 8.03 -2.91 -0.02 4.21 16 30 H 0.15 3.63 8.04 -2.91 -0.02 3.61 16 31 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.12 5.06 5.64 -2.91 -0.02 5.04 16 34 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 35 H 0.10 4.90 7.67 -2.91 -0.02 4.87 16 36 H 0.14 4.81 7.61 -2.91 -0.02 4.79 16 37 H 0.43 5.50 9.11 -74.06 -0.67 4.82 16 Total: -1.00 -71.34 324.42 5.66 -65.69 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.45 Total: 29.75 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 3.49 Total: -44.33 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.30 Total: -53.78 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.61 Total: -41.43 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -71.34 5.66 -65.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243215708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.730 kcal (2) G-P(sol) polarization free energy of solvation -71.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds