Wall clock time and date at job start Tue Mar 31 2020 08:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81397 * 102.99979 * 2 1 4 4 C 1.53006 * 109.47000 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47170 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46981 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47190 * 180.02562 * 6 5 4 8 8 O 1.20823 * 119.99922 * 359.97438 * 7 6 5 9 9 O 1.34225 * 119.99898 * 180.02562 * 7 6 5 10 10 C 1.45203 * 116.99634 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47453 * 30.00043 * 10 9 7 12 12 C 1.50703 * 109.47077 * 269.99954 * 10 9 7 13 13 H 1.07997 * 120.00369 * 125.09385 * 12 10 9 14 14 C 1.37887 * 119.99793 * 305.09195 * 12 10 9 15 15 N 1.31509 * 119.99831 * 7.32560 * 14 12 10 16 16 Si 1.86800 * 119.99751 * 187.32682 * 14 12 10 17 17 H 1.48503 * 109.47048 * 84.99392 * 16 14 12 18 18 H 1.48495 * 109.46975 * 204.98891 * 16 14 12 19 19 H 1.48494 * 109.47350 * 324.99168 * 16 14 12 20 20 C 1.50698 * 109.47194 * 150.00050 * 10 9 7 21 21 C 1.34517 * 125.79132 * 213.32159 * 20 10 9 22 22 C 1.41382 * 106.84180 * 179.88800 * 21 20 10 23 23 C 1.34519 * 106.83930 * 0.37302 * 22 21 20 24 24 O 1.34305 * 108.42320 * 359.77048 * 23 22 21 25 25 H 1.09000 * 109.47657 * 300.00536 * 1 2 3 26 26 H 1.09002 * 109.46456 * 60.00300 * 1 2 3 27 27 H 1.08997 * 109.47216 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47446 * 60.00142 * 3 2 1 29 29 H 1.08998 * 109.47362 * 299.99192 * 3 2 1 30 30 H 1.09002 * 109.47303 * 59.99558 * 4 3 2 31 31 H 1.09007 * 109.46714 * 299.99856 * 4 3 2 32 32 H 1.09004 * 109.47162 * 60.00203 * 5 4 3 33 33 H 1.08993 * 109.47013 * 300.00070 * 5 4 3 34 34 H 1.09000 * 109.47473 * 60.00314 * 6 5 4 35 35 H 1.09002 * 109.47752 * 300.00054 * 6 5 4 36 36 H 0.97005 * 119.99812 * 180.02562 * 15 14 12 37 37 H 1.07997 * 126.57497 * 0.02562 * 21 20 10 38 38 H 1.07999 * 126.57959 * 180.16696 * 22 21 20 39 39 H 1.07998 * 125.78531 * 179.75628 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0866 3.4306 0.0000 6 6 5.6068 3.6030 0.0013 7 6 5.9459 5.0714 0.0013 8 8 5.0623 5.8955 -0.0001 9 8 7.2296 5.4637 0.0018 10 6 7.4817 6.8937 0.0012 11 1 6.6681 7.4064 0.5143 12 6 7.5698 7.3877 -1.4199 13 1 6.9357 8.1969 -1.7506 14 6 8.4600 6.8064 -2.2978 15 7 9.1277 5.7309 -1.9414 16 14 8.7176 7.5466 -3.9935 17 1 9.7271 8.6326 -3.9113 18 1 9.1972 6.4945 -4.9252 19 1 7.4334 8.1012 -4.4918 20 6 8.7803 7.1751 0.7122 21 6 9.0529 8.2665 1.4497 22 6 10.3748 8.1176 1.9286 23 6 10.8339 6.9479 1.4482 24 8 9.8638 6.3814 0.7121 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8032 2.2371 0.8899 29 1 1.8033 2.2371 -0.8900 30 1 4.1617 1.4701 -0.8891 31 1 4.1609 1.4703 0.8910 32 1 3.6673 3.9008 0.8896 33 1 3.6681 3.8997 -0.8904 34 1 6.0266 3.1329 -0.8880 35 1 6.0250 3.1340 0.8919 36 1 9.7543 5.3222 -2.5590 37 1 8.3886 9.0962 1.6413 38 1 10.9139 8.8114 2.5566 39 1 11.8160 6.5347 1.6243 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344936708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:38 Heat of formation + Delta-G solvation = -88.690303 kcal Electronic energy + Delta-G solvation = -21549.308608 eV Core-core repulsion = 18163.740331 eV Total energy + Delta-G solvation = -3385.568276 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.40003 -39.20545 -35.97968 -34.91660 -32.89500 -31.91571 -30.72187 -29.77823 -29.16203 -26.58236 -25.00547 -23.05270 -21.34737 -20.70711 -19.65757 -19.39888 -17.08530 -16.58424 -16.35073 -16.17522 -15.92242 -15.13577 -14.91570 -14.65895 -14.51940 -14.19053 -13.82013 -13.62499 -13.23281 -13.02688 -12.71008 -12.49133 -11.96018 -11.82370 -11.62604 -11.47374 -11.40953 -11.13724 -11.09978 -10.97850 -10.95237 -10.52370 -10.33900 -10.17189 -9.83222 -9.43171 -9.09257 -8.90299 -8.69061 -7.89602 -7.40276 -6.21878 -4.42387 1.46955 2.39330 2.83450 3.20415 3.27085 3.29772 3.34221 3.53951 3.92539 4.17589 4.26428 4.73120 4.76887 4.86063 4.87854 5.08653 5.19936 5.31411 5.40607 5.47491 5.49177 5.73108 5.78122 5.84034 5.89038 5.96817 6.01892 6.32001 6.37683 6.45252 6.48476 6.75432 6.85410 7.15163 7.43066 7.63497 7.80369 7.84868 8.32524 8.59505 9.03877 9.31053 10.77667 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.003180 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.874890 B = 8804.178894 C = 9692.750036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.274 6.274 3 C -0.080 4.080 4 C -0.104 4.104 5 C -0.100 4.100 6 C -0.114 4.114 7 C 0.458 3.542 8 O -0.536 6.536 9 O -0.326 6.326 10 C 0.280 3.720 11 H 0.070 0.930 12 C -0.552 4.552 13 H 0.074 0.926 14 C 0.081 3.919 15 N -0.824 5.824 16 Si 0.895 3.105 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.076 3.924 21 C -0.262 4.262 22 C -0.218 4.218 23 C -0.082 4.082 24 O -0.129 6.129 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.266 0.734 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.448 -7.962 4.957 12.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.048 6.048 3 C -0.228 4.228 4 C -0.143 4.143 5 C -0.140 4.140 6 C -0.152 4.152 7 C 0.302 3.698 8 O -0.428 6.428 9 O -0.240 6.240 10 C 0.227 3.773 11 H 0.088 0.912 12 C -0.588 4.588 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.456 5.456 16 Si 0.721 3.279 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.195 1.195 20 C 0.023 3.977 21 C -0.282 4.282 22 C -0.238 4.238 23 C -0.151 4.151 24 O -0.022 6.022 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.839 -9.017 4.758 12.861 hybrid contribution -0.430 1.812 -0.896 2.067 sum -8.269 -7.205 3.862 11.628 Atomic orbital electron populations 1.23354 0.94384 1.06321 1.04887 1.86932 1.07192 1.12585 1.98099 1.23442 1.00993 0.93194 1.05181 1.21357 0.92011 0.97260 1.03627 1.21351 0.94443 0.94349 1.03824 1.21281 0.96790 0.91906 1.05228 1.23205 0.82410 0.91643 0.72549 1.90533 1.49272 1.55317 1.47683 1.86729 1.25658 1.30942 1.80698 1.18773 0.86131 0.76895 0.95490 0.91202 1.21217 1.23373 1.20458 0.93724 0.90805 1.25146 0.94635 0.94137 0.99054 1.70109 1.23063 1.16753 1.35711 0.86554 0.78949 0.79194 0.83183 1.20101 1.20820 1.19474 1.23066 0.88938 0.90532 0.95131 1.21183 0.98144 1.01504 1.07330 1.21530 0.96563 0.99136 1.06546 1.23800 0.95011 0.96491 0.99799 1.84351 1.19822 1.43476 1.54552 0.90558 0.90536 0.88259 0.89944 0.89877 0.90701 0.90807 0.91100 0.90853 0.88171 0.88722 0.92396 0.84768 0.84979 0.79843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.76 101.05 1.09 0.20 16 2 S -0.27 -2.87 22.38 -107.50 -2.41 -5.27 16 3 C -0.08 -0.80 5.94 37.16 0.22 -0.58 16 4 C -0.10 -1.14 5.22 -26.73 -0.14 -1.28 16 5 C -0.10 -1.35 4.50 -26.73 -0.12 -1.47 16 6 C -0.11 -1.82 5.81 -27.88 -0.16 -1.98 16 7 C 0.46 10.03 7.92 36.01 0.29 10.32 16 8 O -0.54 -12.72 15.20 -18.75 -0.28 -13.00 16 9 O -0.33 -8.19 8.76 -42.22 -0.37 -8.56 16 10 C 0.28 7.23 2.58 -29.03 -0.07 7.15 16 11 H 0.07 1.77 7.16 -51.93 -0.37 1.40 16 12 C -0.55 -15.16 8.87 -34.44 -0.31 -15.46 16 13 H 0.07 2.02 7.82 -52.49 -0.41 1.61 16 14 C 0.08 2.19 5.23 -17.82 -0.09 2.09 16 15 N -0.82 -22.64 11.20 55.43 0.62 -22.02 16 16 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 C 0.08 1.89 5.74 -35.62 -0.20 1.69 16 21 C -0.26 -5.75 10.81 -39.70 -0.43 -6.18 16 22 C -0.22 -4.25 10.91 -39.70 -0.43 -4.68 16 23 C -0.08 -1.64 12.09 29.42 0.36 -1.29 16 24 O -0.13 -3.18 9.64 1.30 0.01 -3.17 16 25 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 26 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 38 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.18 2.84 8.06 -52.49 -0.42 2.42 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -31.23 351.36 -8.00 -39.23 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.83 Total: 3.19 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -0.01 Total: -11.47 kcal Atomic # 7 Polarization: -22.64 SS G_CDS: 0.62 Total: -22.02 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.64 Total: -24.72 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -2.41 Total: -5.27 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.23 -8.00 -39.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344936708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.460 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds