Wall clock time and date at job start Tue Mar 31 2020 08:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81397 * 102.99979 * 2 1 4 4 C 1.53006 * 109.47000 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47170 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46981 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47190 * 180.02562 * 6 5 4 8 8 O 1.20823 * 119.99922 * 359.97438 * 7 6 5 9 9 O 1.34225 * 119.99898 * 180.02562 * 7 6 5 10 10 C 1.45203 * 116.99634 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47453 * 30.00043 * 10 9 7 12 12 C 1.50703 * 109.47077 * 269.99954 * 10 9 7 13 13 H 1.07997 * 120.00369 * 125.09385 * 12 10 9 14 14 C 1.37887 * 119.99793 * 305.09195 * 12 10 9 15 15 N 1.31509 * 119.99831 * 7.32560 * 14 12 10 16 16 Si 1.86800 * 119.99751 * 187.32682 * 14 12 10 17 17 H 1.48503 * 109.47048 * 84.99392 * 16 14 12 18 18 H 1.48495 * 109.46975 * 204.98891 * 16 14 12 19 19 H 1.48494 * 109.47350 * 324.99168 * 16 14 12 20 20 C 1.50698 * 109.47194 * 150.00050 * 10 9 7 21 21 C 1.34517 * 125.79132 * 213.32159 * 20 10 9 22 22 C 1.41382 * 106.84180 * 179.88800 * 21 20 10 23 23 C 1.34519 * 106.83930 * 0.37302 * 22 21 20 24 24 O 1.34305 * 108.42320 * 359.77048 * 23 22 21 25 25 H 1.09000 * 109.47657 * 300.00536 * 1 2 3 26 26 H 1.09002 * 109.46456 * 60.00300 * 1 2 3 27 27 H 1.08997 * 109.47216 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47446 * 60.00142 * 3 2 1 29 29 H 1.08998 * 109.47362 * 299.99192 * 3 2 1 30 30 H 1.09002 * 109.47303 * 59.99558 * 4 3 2 31 31 H 1.09007 * 109.46714 * 299.99856 * 4 3 2 32 32 H 1.09004 * 109.47162 * 60.00203 * 5 4 3 33 33 H 1.08993 * 109.47013 * 300.00070 * 5 4 3 34 34 H 1.09000 * 109.47473 * 60.00314 * 6 5 4 35 35 H 1.09002 * 109.47752 * 300.00054 * 6 5 4 36 36 H 0.97005 * 119.99812 * 180.02562 * 15 14 12 37 37 H 1.07997 * 126.57497 * 0.02562 * 21 20 10 38 38 H 1.07999 * 126.57959 * 180.16696 * 22 21 20 39 39 H 1.07998 * 125.78531 * 179.75628 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0866 3.4306 0.0000 6 6 5.6068 3.6030 0.0013 7 6 5.9459 5.0714 0.0013 8 8 5.0623 5.8955 -0.0001 9 8 7.2296 5.4637 0.0018 10 6 7.4817 6.8937 0.0012 11 1 6.6681 7.4064 0.5143 12 6 7.5698 7.3877 -1.4199 13 1 6.9357 8.1969 -1.7506 14 6 8.4600 6.8064 -2.2978 15 7 9.1277 5.7309 -1.9414 16 14 8.7176 7.5466 -3.9935 17 1 9.7271 8.6326 -3.9113 18 1 9.1972 6.4945 -4.9252 19 1 7.4334 8.1012 -4.4918 20 6 8.7803 7.1751 0.7122 21 6 9.0529 8.2665 1.4497 22 6 10.3748 8.1176 1.9286 23 6 10.8339 6.9479 1.4482 24 8 9.8638 6.3814 0.7121 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8032 2.2371 0.8899 29 1 1.8033 2.2371 -0.8900 30 1 4.1617 1.4701 -0.8891 31 1 4.1609 1.4703 0.8910 32 1 3.6673 3.9008 0.8896 33 1 3.6681 3.8997 -0.8904 34 1 6.0266 3.1329 -0.8880 35 1 6.0250 3.1340 0.8919 36 1 9.7543 5.3222 -2.5590 37 1 8.3886 9.0962 1.6413 38 1 10.9139 8.8114 2.5566 39 1 11.8160 6.5347 1.6243 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344936708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:38 Heat of formation + Delta-G solvation = -104.532145 kcal Electronic energy + Delta-G solvation = -21549.995562 eV Core-core repulsion = 18163.740331 eV Total energy + Delta-G solvation = -3386.255230 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.10403 -40.98467 -37.57180 -36.27831 -34.88367 -33.62524 -32.10489 -31.34092 -29.76689 -28.40977 -26.33726 -24.79963 -22.58733 -22.21422 -21.29841 -21.10503 -18.98969 -18.28919 -17.96311 -17.25737 -17.14558 -16.85371 -16.57414 -16.34301 -16.08395 -15.09470 -14.94806 -14.80863 -14.44895 -14.12948 -13.88950 -13.81917 -13.54838 -13.43691 -13.34392 -13.10904 -12.92778 -12.84023 -12.44083 -12.27740 -12.17894 -12.08940 -11.83589 -11.59201 -11.25896 -10.97599 -10.93122 -10.72215 -10.54701 -9.11602 -8.69410 -8.22601 -6.51277 0.73467 1.13810 1.37351 1.37580 1.47107 1.59112 1.68355 1.89683 2.29681 2.33448 2.53061 3.08313 3.74957 3.87910 3.90673 4.23168 4.26461 4.32658 4.33607 4.37210 4.39593 4.42628 4.50632 4.62949 4.68988 4.73920 4.81671 4.89127 5.00125 5.10632 5.21604 5.22969 5.36739 5.42176 5.56420 5.79318 5.87531 6.05147 6.51168 6.65972 7.16688 7.29949 8.75941 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.003180 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.874890 B = 8804.178894 C = 9692.750036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.318 6.318 3 C -0.073 4.073 4 C -0.094 4.094 5 C -0.090 4.090 6 C -0.105 4.105 7 C 0.445 3.555 8 O -0.561 6.561 9 O -0.342 6.342 10 C 0.279 3.721 11 H 0.056 0.944 12 C -0.580 4.580 13 H 0.060 0.940 14 C 0.043 3.957 15 N -0.844 5.844 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.273 1.273 19 H -0.271 1.271 20 C 0.035 3.965 21 C -0.261 4.261 22 C -0.216 4.216 23 C -0.081 4.081 24 O -0.159 6.159 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.268 0.732 37 H 0.147 0.853 38 H 0.173 0.827 39 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 -8.453 5.316 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.092 6.092 3 C -0.221 4.221 4 C -0.133 4.133 5 C -0.130 4.130 6 C -0.142 4.142 7 C 0.291 3.709 8 O -0.455 6.455 9 O -0.257 6.257 10 C 0.225 3.775 11 H 0.074 0.926 12 C -0.616 4.616 13 H 0.078 0.922 14 C -0.166 4.166 15 N -0.477 5.477 16 Si 0.778 3.222 17 H -0.197 1.197 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.018 4.018 21 C -0.281 4.281 22 C -0.235 4.235 23 C -0.149 4.149 24 O -0.053 6.053 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.130 0.870 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.077 0.923 37 H 0.165 0.835 38 H 0.190 0.810 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -7.423 -9.513 5.126 13.110 hybrid contribution -0.589 1.967 -0.901 2.243 sum -8.012 -7.545 4.224 11.789 Atomic orbital electron populations 1.23417 0.91192 1.07445 1.05776 1.87052 1.10818 1.13136 1.98216 1.23353 1.00152 0.92869 1.05702 1.21237 0.92969 0.95052 1.04002 1.21265 0.92381 0.96179 1.03148 1.21417 0.98717 0.87530 1.06568 1.24385 0.81229 0.93930 0.71337 1.90502 1.49533 1.56681 1.48738 1.86710 1.27467 1.30375 1.81154 1.18606 0.86806 0.77150 0.94891 0.92575 1.21368 1.24125 1.20801 0.95304 0.92202 1.25776 0.94216 0.94417 1.02169 1.70203 1.23320 1.17420 1.36709 0.85645 0.78682 0.78635 0.79236 1.19733 1.19733 1.19552 1.22930 0.89132 0.92030 0.97678 1.21579 0.99645 1.00740 1.06111 1.21948 0.95394 0.99653 1.06497 1.24760 0.95513 0.96536 0.98053 1.84288 1.20611 1.44531 1.55889 0.89560 0.89757 0.87020 0.89172 0.89636 0.90730 0.90045 0.91229 0.92145 0.87580 0.86304 0.92297 0.83543 0.80978 0.75575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.76 113.37 1.22 -0.17 16 2 S -0.32 -6.26 22.38 -56.49 -1.26 -7.53 16 3 C -0.07 -1.37 5.94 71.98 0.43 -0.94 16 4 C -0.09 -1.96 5.22 30.60 0.16 -1.80 16 5 C -0.09 -2.39 4.50 30.59 0.14 -2.25 16 6 C -0.10 -3.32 5.81 29.85 0.17 -3.15 16 7 C 0.45 20.07 7.92 71.24 0.56 20.63 16 8 O -0.56 -27.64 15.20 21.97 0.33 -27.31 16 9 O -0.34 -17.77 8.76 -48.52 -0.43 -18.20 16 10 C 0.28 14.96 2.58 29.10 0.08 15.04 16 11 H 0.06 3.03 7.16 -2.39 -0.02 3.01 16 12 C -0.58 -32.96 8.87 25.60 0.23 -32.73 16 13 H 0.06 3.43 7.82 -2.91 -0.02 3.41 16 14 C 0.04 2.35 5.23 84.66 0.44 2.79 16 15 N -0.84 -46.92 11.20 21.45 0.24 -46.68 16 16 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C 0.03 1.74 5.74 24.83 0.14 1.88 16 21 C -0.26 -11.34 10.81 22.19 0.24 -11.10 16 22 C -0.22 -7.86 10.91 22.19 0.24 -7.62 16 23 C -0.08 -3.06 12.09 66.97 0.81 -2.25 16 24 O -0.16 -7.81 9.64 1.62 0.02 -7.79 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 33 H 0.06 1.75 8.10 -2.39 -0.02 1.73 16 34 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.27 14.05 8.31 -92.70 -0.77 13.28 16 37 H 0.15 5.78 8.06 -2.91 -0.02 5.76 16 38 H 0.17 4.76 8.06 -2.91 -0.02 4.73 16 39 H 0.23 6.19 8.06 -2.91 -0.02 6.17 16 Total: -1.00 -69.16 351.36 6.81 -62.34 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 1.03 Total: 21.76 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 4.86 Total: -21.66 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.24 Total: -46.68 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -0.08 Total: -53.30 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -6.26 SS G_CDS: -1.26 Total: -7.53 kcal Total: -69.16 6.81 -62.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344936708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.188 kcal (2) G-P(sol) polarization free energy of solvation -69.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds