Wall clock time and date at job start Tue Mar 31 2020 08:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39900 * 109.47313 * 2 1 4 4 F 1.39901 * 109.47017 * 239.99983 * 2 1 3 5 5 C 1.52998 * 109.46873 * 119.99993 * 2 1 3 6 6 C 1.50699 * 109.47065 * 179.97438 * 5 2 1 7 7 O 1.21287 * 119.99809 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00366 * 180.02562 * 6 5 2 9 9 C 1.46496 * 119.99786 * 359.97438 * 8 6 5 10 10 C 1.50706 * 109.47106 * 90.00213 * 9 8 6 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00200 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47145 * 89.99836 * 14 12 10 16 16 H 1.48496 * 109.47547 * 210.00333 * 14 12 10 17 17 H 1.48499 * 109.47030 * 330.00237 * 14 12 10 18 18 C 1.46499 * 119.99985 * 180.02562 * 8 6 5 19 19 C 1.50699 * 109.47014 * 269.99526 * 18 8 6 20 20 C 1.38671 * 120.41999 * 269.72104 * 19 18 8 21 21 C 1.38629 * 118.42416 * 179.78139 * 20 19 18 22 22 C 1.38230 * 119.15562 * 0.51736 * 21 20 19 23 23 N 1.31851 * 120.76708 * 359.72674 * 22 21 20 24 24 C 1.31892 * 121.72574 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.46507 * 300.00141 * 1 2 3 26 26 H 1.09002 * 109.46972 * 59.99744 * 1 2 3 27 27 H 1.08994 * 109.47272 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47139 * 60.00071 * 5 2 1 29 29 H 1.08997 * 109.47675 * 299.99671 * 5 2 1 30 30 H 1.09001 * 109.47001 * 330.00504 * 9 8 6 31 31 H 1.09000 * 109.47574 * 210.00720 * 9 8 6 32 32 H 0.96999 * 120.00061 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.47510 * 29.99803 * 18 8 6 34 34 H 1.09000 * 109.46747 * 149.99494 * 18 8 6 35 35 H 1.08005 * 120.78945 * 0.02562 * 20 19 18 36 36 H 1.07994 * 120.42378 * 180.22394 * 21 20 19 37 37 H 1.07998 * 119.61423 * 179.74009 * 22 21 20 38 38 H 1.08000 * 119.61937 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 3.5470 -0.7218 1.2490 7 8 4.1534 -0.1974 0.3389 8 7 4.2209 -1.3060 2.2595 9 6 3.4884 -1.9399 3.3584 10 6 3.2361 -3.3877 3.0248 11 1 3.5868 -3.7949 2.0880 12 6 2.5577 -4.1923 3.9154 13 7 2.3380 -5.4559 3.6244 14 14 1.9519 -3.4881 5.5360 15 1 0.5791 -2.9501 5.3596 16 1 1.9356 -4.5581 6.5656 17 1 2.8593 -2.3962 5.9713 18 6 5.6859 -1.3060 2.2594 19 6 6.1882 -2.5361 1.5484 20 6 6.4277 -3.7060 2.2535 21 6 6.8848 -4.8142 1.5573 22 6 7.0955 -4.7137 0.1948 23 7 6.8618 -3.5833 -0.4423 24 6 6.4210 -2.5110 0.1866 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6766 -1.7489 1.2492 29 1 1.6768 -0.2075 2.1392 30 1 2.5364 -1.4291 3.5028 31 1 4.0778 -1.8751 4.2731 32 1 1.8611 -6.0221 4.2512 33 1 6.0493 -0.4158 1.7460 34 1 6.0492 -1.3064 3.2871 35 1 6.2583 -3.7538 3.3191 36 1 7.0784 -5.7427 2.0735 37 1 7.4556 -5.5712 -0.3542 38 1 6.2405 -1.6027 -0.3691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277120239.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:53 Heat of formation + Delta-G solvation = -103.177975 kcal Electronic energy + Delta-G solvation = -25058.439516 eV Core-core repulsion = 21150.695372 eV Total energy + Delta-G solvation = -3907.744145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.123 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.50613 -46.49050 -39.89778 -38.88051 -35.41144 -33.24547 -32.69144 -31.97966 -31.16136 -28.55579 -28.16098 -25.67049 -23.07895 -22.65980 -22.07443 -21.26606 -18.73472 -17.38485 -17.09465 -16.87112 -16.54041 -16.31376 -15.75964 -15.25633 -15.16124 -15.02332 -14.29714 -14.10431 -13.42160 -13.30171 -13.08962 -12.95037 -12.83085 -12.70921 -12.49562 -12.44522 -12.38002 -12.21672 -11.93305 -11.80167 -11.69251 -11.13951 -11.06508 -10.89570 -10.60169 -10.39189 -9.78718 -9.40016 -9.14836 -8.97571 -8.83360 -8.49553 -7.91843 -6.31068 -4.33827 1.58297 1.86555 3.06383 3.14279 3.16106 3.17711 3.58111 4.09823 4.15343 4.36097 4.39544 4.69736 4.71379 4.93132 4.97721 5.16855 5.33706 5.36791 5.41694 5.48704 5.54423 5.59129 5.80210 5.85425 5.87312 5.96437 6.05566 6.15645 6.26516 6.30752 6.47664 6.67472 6.82923 7.13256 7.23114 7.31461 7.93543 8.27477 8.46731 8.69592 8.79582 9.26997 10.80805 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.007984 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.449494 B = 3506.230830 C = 5401.755374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.306 3.694 3 F -0.198 7.198 4 F -0.193 7.193 5 C -0.185 4.185 6 C 0.522 3.478 7 O -0.548 6.548 8 N -0.587 5.587 9 C 0.205 3.795 10 C -0.540 4.540 11 H 0.081 0.919 12 C 0.079 3.921 13 N -0.885 5.885 14 Si 0.867 3.133 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.265 1.265 18 C 0.167 3.833 19 C -0.147 4.147 20 C -0.030 4.030 21 C -0.175 4.175 22 C 0.090 3.910 23 N -0.496 5.496 24 C 0.114 3.886 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.134 0.866 29 H 0.115 0.885 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.267 0.733 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.941 6.825 -0.206 6.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.269 3.731 3 F -0.179 7.179 4 F -0.174 7.174 5 C -0.225 4.225 6 C 0.310 3.690 7 O -0.427 6.427 8 N -0.317 5.317 9 C 0.084 3.916 10 C -0.578 4.578 11 H 0.099 0.901 12 C -0.125 4.125 13 N -0.522 5.522 14 Si 0.693 3.307 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.189 1.189 18 C 0.043 3.957 19 C -0.150 4.150 20 C -0.057 4.057 21 C -0.195 4.195 22 C -0.067 4.067 23 N -0.205 5.205 24 C -0.043 4.043 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.152 0.848 29 H 0.133 0.867 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.341 6.984 -1.513 7.271 hybrid contribution -0.709 -0.192 1.949 2.083 sum 0.632 6.792 0.436 6.835 Atomic orbital electron populations 1.22780 0.91755 1.05635 1.04978 1.20689 0.92731 0.75775 0.83906 1.92999 1.90679 1.37406 1.96862 1.93031 1.90585 1.80800 1.52999 1.22836 0.95718 1.05827 0.98127 1.20002 0.89140 0.78012 0.81844 1.90679 1.70045 1.46623 1.35374 1.47894 1.05399 1.54791 1.23623 1.19908 0.91921 0.94354 0.85383 1.21362 1.37551 0.92352 1.06570 0.90111 1.24870 0.95262 0.94657 0.97757 1.69892 1.40410 1.05505 1.36442 0.87003 0.79958 0.79393 0.84303 1.19887 1.20907 1.18925 1.20121 0.80564 0.94951 1.00047 1.21150 1.00782 0.97414 0.95686 1.21457 0.91873 0.91480 1.00866 1.22039 1.02101 0.99496 0.95882 1.22628 0.96594 0.95474 0.92009 1.67664 1.12737 0.99841 1.40247 1.22712 0.93570 0.96582 0.91443 0.89385 0.90142 0.88993 0.84751 0.86659 0.95256 0.94676 0.92333 0.89608 0.89931 0.84768 0.85343 0.83595 0.82923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 9.38 37.16 0.35 -1.86 16 2 C 0.31 4.90 1.85 -26.73 -0.05 4.85 16 3 F -0.20 -3.47 16.15 2.25 0.04 -3.43 16 4 F -0.19 -3.68 16.14 2.25 0.04 -3.65 16 5 C -0.18 -3.08 3.85 -27.88 -0.11 -3.19 16 6 C 0.52 10.24 7.44 -10.99 -0.08 10.16 16 7 O -0.55 -11.87 13.97 5.55 0.08 -11.79 16 8 N -0.59 -11.16 2.44 -176.43 -0.43 -11.59 16 9 C 0.21 4.10 4.08 -5.19 -0.02 4.08 16 10 C -0.54 -12.97 9.31 -34.44 -0.32 -13.29 16 11 H 0.08 2.26 7.85 -52.49 -0.41 1.85 16 12 C 0.08 1.96 5.47 -17.82 -0.10 1.87 16 13 N -0.89 -24.23 13.96 55.43 0.77 -23.45 16 14 Si 0.87 18.33 27.47 -169.99 -4.67 13.66 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.26 -5.26 6.54 56.52 0.37 -4.89 16 18 C 0.17 2.84 5.60 -5.19 -0.03 2.81 16 19 C -0.15 -2.68 5.48 -104.48 -0.57 -3.25 16 20 C -0.03 -0.54 9.13 -39.28 -0.36 -0.90 16 21 C -0.18 -2.94 10.11 -39.44 -0.40 -3.34 16 22 C 0.09 1.53 11.18 -17.55 -0.20 1.33 16 23 N -0.50 -9.51 10.36 -13.25 -0.14 -9.65 16 24 C 0.11 2.18 10.86 -17.55 -0.19 1.99 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.13 2.34 8.00 -51.93 -0.42 1.92 16 29 H 0.12 1.61 7.40 -51.93 -0.38 1.22 16 30 H 0.03 0.55 5.87 -51.93 -0.30 0.25 16 31 H 0.04 0.68 6.95 -51.93 -0.36 0.32 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.09 1.40 7.37 -51.93 -0.38 1.02 16 34 H 0.08 1.22 7.84 -51.93 -0.41 0.81 16 35 H 0.13 2.32 8.06 -52.48 -0.42 1.90 16 36 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.15 2.01 8.06 -52.49 -0.42 1.58 16 38 H 0.15 2.94 7.61 -52.49 -0.40 2.54 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -30.64 330.78 -6.17 -36.81 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.77 Total: 6.85 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.07 Total: 1.25 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.21 Total: -44.70 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.07 Total: -7.08 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -4.67 Total: 13.66 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.64 -6.17 -36.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277120239.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.363 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds