Wall clock time and date at job start Tue Mar 31 2020 08:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39900 * 109.47313 * 2 1 4 4 F 1.39901 * 109.47017 * 239.99983 * 2 1 3 5 5 C 1.52998 * 109.46873 * 119.99993 * 2 1 3 6 6 C 1.50699 * 109.47065 * 179.97438 * 5 2 1 7 7 O 1.21287 * 119.99809 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00366 * 180.02562 * 6 5 2 9 9 C 1.46496 * 119.99786 * 359.97438 * 8 6 5 10 10 C 1.50706 * 109.47106 * 90.00213 * 9 8 6 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00200 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47145 * 89.99836 * 14 12 10 16 16 H 1.48496 * 109.47547 * 210.00333 * 14 12 10 17 17 H 1.48499 * 109.47030 * 330.00237 * 14 12 10 18 18 C 1.46499 * 119.99985 * 180.02562 * 8 6 5 19 19 C 1.50699 * 109.47014 * 269.99526 * 18 8 6 20 20 C 1.38671 * 120.41999 * 269.72104 * 19 18 8 21 21 C 1.38629 * 118.42416 * 179.78139 * 20 19 18 22 22 C 1.38230 * 119.15562 * 0.51736 * 21 20 19 23 23 N 1.31851 * 120.76708 * 359.72674 * 22 21 20 24 24 C 1.31892 * 121.72574 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.46507 * 300.00141 * 1 2 3 26 26 H 1.09002 * 109.46972 * 59.99744 * 1 2 3 27 27 H 1.08994 * 109.47272 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47139 * 60.00071 * 5 2 1 29 29 H 1.08997 * 109.47675 * 299.99671 * 5 2 1 30 30 H 1.09001 * 109.47001 * 330.00504 * 9 8 6 31 31 H 1.09000 * 109.47574 * 210.00720 * 9 8 6 32 32 H 0.96999 * 120.00061 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.47510 * 29.99803 * 18 8 6 34 34 H 1.09000 * 109.46747 * 149.99494 * 18 8 6 35 35 H 1.08005 * 120.78945 * 0.02562 * 20 19 18 36 36 H 1.07994 * 120.42378 * 180.22394 * 21 20 19 37 37 H 1.07998 * 119.61423 * 179.74009 * 22 21 20 38 38 H 1.08000 * 119.61937 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 3.5470 -0.7218 1.2490 7 8 4.1534 -0.1974 0.3389 8 7 4.2209 -1.3060 2.2595 9 6 3.4884 -1.9399 3.3584 10 6 3.2361 -3.3877 3.0248 11 1 3.5868 -3.7949 2.0880 12 6 2.5577 -4.1923 3.9154 13 7 2.3380 -5.4559 3.6244 14 14 1.9519 -3.4881 5.5360 15 1 0.5791 -2.9501 5.3596 16 1 1.9356 -4.5581 6.5656 17 1 2.8593 -2.3962 5.9713 18 6 5.6859 -1.3060 2.2594 19 6 6.1882 -2.5361 1.5484 20 6 6.4277 -3.7060 2.2535 21 6 6.8848 -4.8142 1.5573 22 6 7.0955 -4.7137 0.1948 23 7 6.8618 -3.5833 -0.4423 24 6 6.4210 -2.5110 0.1866 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6766 -1.7489 1.2492 29 1 1.6768 -0.2075 2.1392 30 1 2.5364 -1.4291 3.5028 31 1 4.0778 -1.8751 4.2731 32 1 1.8611 -6.0221 4.2512 33 1 6.0493 -0.4158 1.7460 34 1 6.0492 -1.3064 3.2871 35 1 6.2583 -3.7538 3.3191 36 1 7.0784 -5.7427 2.0735 37 1 7.4556 -5.5712 -0.3542 38 1 6.2405 -1.6027 -0.3691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277120239.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:53 Heat of formation + Delta-G solvation = -121.278730 kcal Electronic energy + Delta-G solvation = -25059.224424 eV Core-core repulsion = 21150.695372 eV Total energy + Delta-G solvation = -3908.529052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.123 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.83507 -47.84662 -41.34585 -40.36646 -36.98395 -34.77014 -34.23698 -33.41090 -32.57047 -29.94603 -29.68040 -27.05672 -24.61813 -24.26216 -23.44625 -22.56978 -20.21214 -19.08622 -18.52593 -18.29256 -17.99025 -17.72829 -17.13455 -16.66668 -16.64348 -16.49844 -15.80754 -15.64342 -14.78888 -14.74659 -14.67138 -14.33109 -14.20831 -14.14629 -13.91946 -13.79802 -13.59521 -13.44080 -13.36688 -13.06954 -13.02259 -12.67155 -12.55150 -12.43682 -11.97950 -11.88806 -11.63962 -10.94924 -10.74412 -10.56633 -10.42125 -9.92112 -9.48525 -8.21243 -6.28346 0.17898 0.43336 1.44393 1.47988 1.55225 1.64337 2.18016 2.39670 2.87373 2.97880 3.12571 3.19058 3.41417 3.52663 3.57359 3.87316 3.94296 4.05108 4.14664 4.19536 4.33659 4.48498 4.52782 4.62461 4.66428 4.74623 4.80521 4.85566 4.89136 4.90835 5.03210 5.27417 5.40782 5.48583 5.63342 5.84190 6.22667 6.54674 6.79300 7.04315 7.19031 7.37726 8.94105 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.007984 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.449494 B = 3506.230830 C = 5401.755374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.294 3.706 3 F -0.208 7.208 4 F -0.218 7.218 5 C -0.184 4.184 6 C 0.511 3.489 7 O -0.575 6.575 8 N -0.588 5.588 9 C 0.209 3.791 10 C -0.525 4.525 11 H 0.030 0.970 12 C 0.025 3.975 13 N -0.940 5.940 14 Si 0.933 3.067 15 H -0.262 1.262 16 H -0.295 1.295 17 H -0.236 1.236 18 C 0.163 3.837 19 C -0.152 4.152 20 C -0.042 4.042 21 C -0.177 4.177 22 C 0.084 3.916 23 N -0.518 5.518 24 C 0.096 3.904 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.149 0.851 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.265 0.735 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.139 0.861 36 H 0.153 0.847 37 H 0.179 0.821 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 7.908 1.737 8.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.258 3.742 3 F -0.190 7.190 4 F -0.199 7.199 5 C -0.224 4.224 6 C 0.300 3.700 7 O -0.456 6.456 8 N -0.317 5.317 9 C 0.088 3.912 10 C -0.564 4.564 11 H 0.048 0.952 12 C -0.174 4.174 13 N -0.580 5.580 14 Si 0.756 3.244 15 H -0.187 1.187 16 H -0.222 1.222 17 H -0.159 1.159 18 C 0.040 3.960 19 C -0.155 4.155 20 C -0.069 4.069 21 C -0.196 4.196 22 C -0.073 4.073 23 N -0.227 5.227 24 C -0.060 4.060 25 H 0.133 0.867 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.143 0.857 29 H 0.166 0.834 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.157 0.843 36 H 0.171 0.829 37 H 0.196 0.804 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.532 8.102 0.427 8.130 hybrid contribution -0.372 -0.598 1.254 1.438 sum 0.160 7.504 1.681 7.692 Atomic orbital electron populations 1.22795 0.87695 1.06760 1.06948 1.21241 0.95409 0.74917 0.82673 1.92973 1.91137 1.38030 1.96823 1.92981 1.91200 1.81331 1.54390 1.22916 0.93584 1.05824 1.00065 1.20595 0.90498 0.77535 0.81416 1.90664 1.70922 1.47812 1.36202 1.47952 1.06156 1.54256 1.23351 1.19858 0.93431 0.91894 0.86063 1.21362 1.36351 0.94388 1.04302 0.95181 1.25672 0.95505 0.94635 1.01602 1.70064 1.42343 1.07458 1.38097 0.85942 0.80347 0.79014 0.79067 1.18698 1.22160 1.15876 1.20314 0.79704 0.94499 1.01521 1.21256 1.00689 0.98163 0.95366 1.21644 0.92172 0.91808 1.01236 1.22380 1.01071 1.00161 0.96034 1.23170 0.95936 0.95655 0.92517 1.67643 1.13431 1.00571 1.41063 1.22665 0.94752 0.96574 0.92031 0.86685 0.88998 0.88257 0.85698 0.83370 0.92902 0.92860 0.92599 0.89332 0.87257 0.84290 0.82914 0.80444 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 9.38 71.98 0.68 -3.07 16 2 C 0.29 9.09 1.85 30.60 0.06 9.15 16 3 F -0.21 -7.07 16.15 44.97 0.73 -6.34 16 4 F -0.22 -8.40 16.14 44.97 0.73 -7.67 16 5 C -0.18 -5.85 3.85 29.85 0.11 -5.73 16 6 C 0.51 19.72 7.44 87.66 0.65 20.37 16 7 O -0.58 -25.17 13.97 -3.05 -0.04 -25.22 16 8 N -0.59 -21.61 2.44 -830.50 -2.03 -23.64 16 9 C 0.21 7.80 4.08 85.64 0.35 8.15 16 10 C -0.53 -24.90 9.31 25.60 0.24 -24.66 16 11 H 0.03 1.72 7.85 -2.91 -0.02 1.69 16 12 C 0.02 1.22 5.47 84.65 0.46 1.69 16 13 N -0.94 -52.05 13.96 21.44 0.30 -51.75 16 14 Si 0.93 35.88 27.47 68.60 1.88 37.77 16 15 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 16 H -0.30 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.24 -7.92 6.54 99.48 0.65 -7.27 16 18 C 0.16 5.39 5.60 85.63 0.48 5.87 16 19 C -0.15 -5.55 5.48 -19.77 -0.11 -5.66 16 20 C -0.04 -1.49 9.13 22.47 0.21 -1.28 16 21 C -0.18 -5.82 10.11 22.36 0.23 -5.60 16 22 C 0.08 2.82 11.18 84.69 0.95 3.77 16 23 N -0.52 -20.18 10.36 -195.84 -2.03 -22.21 16 24 C 0.10 3.80 10.86 84.67 0.92 4.72 16 25 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.12 4.24 8.00 -2.39 -0.02 4.22 16 29 H 0.15 3.63 7.40 -2.39 -0.02 3.61 16 30 H 0.05 1.77 5.87 -2.39 -0.01 1.75 16 31 H 0.05 1.85 6.95 -2.39 -0.02 1.83 16 32 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 33 H 0.09 2.87 7.37 -2.39 -0.02 2.86 16 34 H 0.11 2.98 7.84 -2.39 -0.02 2.96 16 35 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 36 H 0.15 4.19 8.06 -2.91 -0.02 4.16 16 37 H 0.18 4.63 8.06 -2.91 -0.02 4.60 16 38 H 0.14 5.76 7.61 -2.91 -0.02 5.74 16 Total: -1.00 -68.06 330.78 5.77 -62.29 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 1.02 Total: 29.07 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 5.22 Total: 7.70 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -3.76 Total: -97.60 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.04 Total: -25.22 kcal Atomic # 9 Polarization: -15.46 SS G_CDS: 1.45 Total: -14.01 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 1.88 Total: 37.77 kcal Total: -68.06 5.77 -62.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277120239.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.990 kcal (2) G-P(sol) polarization free energy of solvation -68.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds