Wall clock time and date at job start Tue Mar 31 2020 07:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34394 * 125.74431 * 2 1 4 4 C 1.38298 * 107.36492 * 179.74984 * 3 2 1 5 5 C 1.46959 * 126.44446 * 180.26086 * 4 3 2 6 6 C 1.35075 * 119.99951 * 180.14853 * 5 4 3 7 7 C 1.41758 * 119.99812 * 179.97438 * 6 5 4 8 8 O 1.21743 * 120.00364 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99836 * 179.97438 * 7 6 5 10 10 C 1.39350 * 120.00218 * 175.13674 * 9 7 6 11 11 C 1.38673 * 119.65102 * 184.89718 * 10 9 7 12 12 C 1.40822 * 118.66753 * 179.75421 * 11 10 9 13 13 C 1.41550 * 120.99553 * 180.28125 * 12 11 10 14 14 H 1.07994 * 119.99764 * 203.88032 * 13 12 11 15 15 C 1.40034 * 119.99498 * 23.88006 * 13 12 11 16 16 N 1.30735 * 120.00556 * 16.81234 * 15 13 12 17 17 Si 1.86806 * 119.99647 * 196.81052 * 15 13 12 18 18 H 1.48499 * 109.47205 * 59.99778 * 17 15 13 19 19 H 1.48490 * 109.47205 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46799 * 300.00189 * 17 15 13 21 21 C 1.41164 * 118.00853 * 0.50859 * 12 11 10 22 22 C 1.36601 * 119.13265 * 359.75146 * 21 12 11 23 23 N 1.32061 * 121.26141 * 359.97438 * 22 21 12 24 24 C 1.41443 * 107.11147 * 0.35992 * 4 3 2 25 25 N 1.30443 * 108.03558 * 359.63253 * 24 4 3 26 26 H 1.08997 * 109.47273 * 270.00222 * 1 2 3 27 27 H 1.08999 * 109.46936 * 30.00008 * 1 2 3 28 28 H 1.08995 * 109.47349 * 150.00153 * 1 2 3 29 29 H 1.08005 * 126.32108 * 359.97090 * 3 2 1 30 30 H 1.08003 * 119.99747 * 0.13854 * 5 4 3 31 31 H 1.07996 * 119.99980 * 359.97438 * 6 5 4 32 32 H 0.97003 * 120.00498 * 355.13096 * 9 7 6 33 33 H 1.08003 * 120.66743 * 0.02562 * 11 10 9 34 34 H 0.96992 * 120.00423 * 179.97438 * 16 15 13 35 35 H 1.07997 * 120.43752 * 179.77425 * 21 12 11 36 36 H 1.08000 * 119.36802 * 180.02562 * 22 21 12 37 37 H 1.07997 * 125.97564 * 179.90445 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2501 1.0908 0.0000 4 6 3.5625 0.6547 0.0058 5 6 4.7637 1.5014 0.0132 6 6 5.9896 0.9343 0.0153 7 6 7.1483 1.7510 0.0220 8 8 7.0385 2.9634 0.0263 9 7 8.3715 1.1852 0.0246 10 6 9.5091 1.9843 -0.0712 11 6 10.7583 1.3904 -0.1706 12 6 11.8934 2.2176 -0.2716 13 6 13.1915 1.6639 -0.3814 14 1 14.0522 2.2411 -0.0777 15 6 13.3594 0.3675 -0.8836 16 7 12.3912 -0.2064 -1.5487 17 14 14.9670 -0.5417 -0.6033 18 1 15.2050 -0.6884 0.8551 19 1 14.8911 -1.8859 -1.2296 20 1 16.0827 0.2264 -1.2121 21 6 11.6985 3.6156 -0.2552 22 6 10.4292 4.1089 -0.1483 23 7 9.3861 3.3037 -0.0610 24 6 3.5312 -0.7593 0.0008 25 7 2.2823 -1.1357 0.0005 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.9175 2.1184 -0.0004 30 1 4.6662 2.5770 0.0169 31 1 6.0871 -0.1413 0.0119 32 1 8.4601 0.2216 0.0932 33 1 10.8582 0.3150 -0.1749 34 1 12.5077 -1.1041 -1.8970 35 1 12.5418 4.2865 -0.3266 36 1 10.2756 5.1778 -0.1358 37 1 4.3910 -1.4129 0.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763914708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:45 Heat of formation + Delta-G solvation = 101.103328 kcal Electronic energy + Delta-G solvation = -21808.415040 eV Core-core repulsion = 18360.218384 eV Total energy + Delta-G solvation = -3448.196656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.37191 -39.55665 -37.82307 -34.60254 -34.15520 -33.64355 -32.66566 -30.51764 -29.98925 -28.58399 -26.90657 -25.95653 -23.90468 -21.91744 -21.61226 -21.17849 -20.07979 -18.93699 -17.65601 -17.07112 -16.81911 -15.80555 -15.68362 -15.19048 -14.70114 -14.38001 -14.29541 -14.15492 -13.79544 -13.63358 -13.26936 -13.17138 -12.87167 -12.57422 -12.46554 -12.24573 -11.98235 -11.42493 -11.19167 -10.86029 -10.81793 -10.35833 -10.26378 -10.10069 -9.79966 -9.65549 -9.33747 -9.28305 -8.03817 -7.93943 -7.64596 -6.95991 -6.76558 -4.57313 0.97001 1.77590 2.15070 2.69484 2.83541 3.02440 3.03256 3.05731 3.31101 3.86635 3.88566 4.09721 4.18432 4.48583 4.69931 4.72791 4.74310 4.97199 5.06283 5.18281 5.36807 5.41971 5.73541 5.75455 6.03978 6.29040 6.45354 6.48818 6.64505 6.67110 6.76934 6.88017 7.01915 7.15397 7.37570 7.46405 7.53887 7.84911 8.02346 8.29774 8.48731 8.76058 8.78416 9.02417 9.77845 10.09764 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.025267 B = 0.002656 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.917694 B =10541.162435 C =11569.737492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.370 5.370 3 C 0.081 3.919 4 C -0.225 4.225 5 C 0.021 3.979 6 C -0.224 4.224 7 C 0.534 3.466 8 O -0.494 6.494 9 N -0.656 5.656 10 C 0.340 3.660 11 C -0.247 4.247 12 C 0.143 3.857 13 C -0.456 4.456 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.787 5.787 17 Si 0.911 3.089 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.285 4.285 22 C 0.118 3.882 23 N -0.554 5.554 24 C 0.074 3.926 25 N -0.303 5.303 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.183 0.817 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.407 0.593 33 H 0.127 0.873 34 H 0.282 0.718 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.410 -3.663 2.131 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.149 5.149 3 C -0.068 4.068 4 C -0.237 4.237 5 C 0.000 4.000 6 C -0.246 4.246 7 C 0.323 3.677 8 O -0.368 6.368 9 N -0.301 5.301 10 C 0.115 3.885 11 C -0.273 4.273 12 C 0.135 3.865 13 C -0.487 4.487 14 H 0.100 0.900 15 C -0.141 4.141 16 N -0.412 5.412 17 Si 0.735 3.265 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.309 4.309 22 C -0.035 4.035 23 N -0.274 5.274 24 C -0.113 4.113 25 N -0.123 5.123 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.200 0.800 30 H 0.152 0.848 31 H 0.138 0.862 32 H 0.242 0.758 33 H 0.145 0.855 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -20.472 -3.670 2.055 20.899 hybrid contribution 2.196 -0.757 -0.076 2.324 sum -18.275 -4.427 1.979 18.908 Atomic orbital electron populations 1.21929 0.73881 1.04777 1.03668 1.48336 1.07006 1.03965 1.55583 1.23156 0.90644 0.93544 0.99464 1.19520 0.92639 0.93149 1.18377 1.21530 0.89388 0.98864 0.90210 1.21808 0.92965 1.00195 1.09609 1.17163 0.83505 0.88642 0.78352 1.90882 1.86327 1.13923 1.45683 1.43378 1.04766 1.09857 1.72065 1.18218 0.84824 0.88719 0.96742 1.21559 0.90197 1.00809 1.14714 1.17570 0.93046 0.90381 0.85537 1.19540 0.93245 0.98460 1.37472 0.90046 1.25955 0.98505 0.97397 0.92232 1.69771 1.33297 1.14356 1.23819 0.86319 0.81783 0.78473 0.79887 1.18726 1.20278 1.18899 1.21648 0.96955 0.95954 1.16296 1.21488 0.88343 0.97471 0.96229 1.67265 1.33528 1.02449 1.24144 1.24198 0.94963 0.94534 0.97578 1.77141 1.02189 1.07904 1.25073 0.90447 0.89199 0.89074 0.79973 0.84796 0.86161 0.75779 0.85492 0.90676 0.88122 0.86075 0.79329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.43 11.44 59.85 0.68 1.12 16 2 N -0.37 -3.34 3.98 -67.50 -0.27 -3.61 16 3 C 0.08 0.71 11.52 -16.41 -0.19 0.53 16 4 C -0.23 -2.51 6.08 -105.12 -0.64 -3.15 16 5 C 0.02 0.27 9.64 -37.18 -0.36 -0.08 16 6 C -0.22 -3.22 9.33 -39.36 -0.37 -3.59 16 7 C 0.53 10.49 7.52 -14.92 -0.11 10.38 16 8 O -0.49 -11.65 14.36 5.15 0.07 -11.57 16 9 N -0.66 -13.35 5.37 -14.06 -0.08 -13.42 16 10 C 0.34 8.49 7.42 -154.75 -1.15 7.35 16 11 C -0.25 -6.39 8.63 -38.44 -0.33 -6.73 16 12 C 0.14 3.83 5.60 -106.55 -0.60 3.23 16 13 C -0.46 -11.86 9.12 -37.65 -0.34 -12.20 16 14 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 15 C 0.08 1.91 5.20 -17.35 -0.09 1.82 16 16 N -0.79 -19.59 10.93 55.55 0.61 -18.98 16 17 Si 0.91 18.04 29.59 -169.99 -5.03 13.01 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 C -0.28 -7.13 9.85 -39.06 -0.38 -7.52 16 22 C 0.12 2.92 11.10 -18.04 -0.20 2.72 16 23 N -0.55 -14.56 7.85 -12.77 -0.10 -14.66 16 24 C 0.07 0.81 11.39 -16.92 -0.19 0.62 16 25 N -0.30 -3.51 12.49 30.89 0.39 -3.12 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.18 0.97 8.06 -52.48 -0.42 0.54 16 30 H 0.13 1.79 7.45 -52.48 -0.39 1.40 16 31 H 0.12 1.36 6.93 -52.49 -0.36 1.00 16 32 H 0.41 6.79 8.66 -40.82 -0.35 6.43 16 33 H 0.13 3.24 6.21 -52.48 -0.33 2.92 16 34 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 35 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 36 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 37 H 0.19 1.64 7.31 -52.49 -0.38 1.25 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -35.01 331.08 -7.59 -42.61 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -3.90 Total: 10.26 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -4.27 Total: -5.50 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.55 Total: -53.80 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.07 Total: -11.57 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.01 -7.59 -42.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763914708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.709 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds