Wall clock time and date at job start Tue Mar 31 2020 07:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34394 * 125.74431 * 2 1 4 4 C 1.38298 * 107.36492 * 179.74984 * 3 2 1 5 5 C 1.46959 * 126.44446 * 180.26086 * 4 3 2 6 6 C 1.35075 * 119.99951 * 180.14853 * 5 4 3 7 7 C 1.41758 * 119.99812 * 179.97438 * 6 5 4 8 8 O 1.21743 * 120.00364 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99836 * 179.97438 * 7 6 5 10 10 C 1.39350 * 120.00218 * 175.13674 * 9 7 6 11 11 C 1.38673 * 119.65102 * 184.89718 * 10 9 7 12 12 C 1.40822 * 118.66753 * 179.75421 * 11 10 9 13 13 C 1.41550 * 120.99553 * 180.28125 * 12 11 10 14 14 H 1.07994 * 119.99764 * 203.88032 * 13 12 11 15 15 C 1.40034 * 119.99498 * 23.88006 * 13 12 11 16 16 N 1.30735 * 120.00556 * 16.81234 * 15 13 12 17 17 Si 1.86806 * 119.99647 * 196.81052 * 15 13 12 18 18 H 1.48499 * 109.47205 * 59.99778 * 17 15 13 19 19 H 1.48490 * 109.47205 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46799 * 300.00189 * 17 15 13 21 21 C 1.41164 * 118.00853 * 0.50859 * 12 11 10 22 22 C 1.36601 * 119.13265 * 359.75146 * 21 12 11 23 23 N 1.32061 * 121.26141 * 359.97438 * 22 21 12 24 24 C 1.41443 * 107.11147 * 0.35992 * 4 3 2 25 25 N 1.30443 * 108.03558 * 359.63253 * 24 4 3 26 26 H 1.08997 * 109.47273 * 270.00222 * 1 2 3 27 27 H 1.08999 * 109.46936 * 30.00008 * 1 2 3 28 28 H 1.08995 * 109.47349 * 150.00153 * 1 2 3 29 29 H 1.08005 * 126.32108 * 359.97090 * 3 2 1 30 30 H 1.08003 * 119.99747 * 0.13854 * 5 4 3 31 31 H 1.07996 * 119.99980 * 359.97438 * 6 5 4 32 32 H 0.97003 * 120.00498 * 355.13096 * 9 7 6 33 33 H 1.08003 * 120.66743 * 0.02562 * 11 10 9 34 34 H 0.96992 * 120.00423 * 179.97438 * 16 15 13 35 35 H 1.07997 * 120.43752 * 179.77425 * 21 12 11 36 36 H 1.08000 * 119.36802 * 180.02562 * 22 21 12 37 37 H 1.07997 * 125.97564 * 179.90445 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2501 1.0908 0.0000 4 6 3.5625 0.6547 0.0058 5 6 4.7637 1.5014 0.0132 6 6 5.9896 0.9343 0.0153 7 6 7.1483 1.7510 0.0220 8 8 7.0385 2.9634 0.0263 9 7 8.3715 1.1852 0.0246 10 6 9.5091 1.9843 -0.0712 11 6 10.7583 1.3904 -0.1706 12 6 11.8934 2.2176 -0.2716 13 6 13.1915 1.6639 -0.3814 14 1 14.0522 2.2411 -0.0777 15 6 13.3594 0.3675 -0.8836 16 7 12.3912 -0.2064 -1.5487 17 14 14.9670 -0.5417 -0.6033 18 1 15.2050 -0.6884 0.8551 19 1 14.8911 -1.8859 -1.2296 20 1 16.0827 0.2264 -1.2121 21 6 11.6985 3.6156 -0.2552 22 6 10.4292 4.1089 -0.1483 23 7 9.3861 3.3037 -0.0610 24 6 3.5312 -0.7593 0.0008 25 7 2.2823 -1.1357 0.0005 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.9175 2.1184 -0.0004 30 1 4.6662 2.5770 0.0169 31 1 6.0871 -0.1413 0.0119 32 1 8.4601 0.2216 0.0932 33 1 10.8582 0.3150 -0.1749 34 1 12.5077 -1.1041 -1.8970 35 1 12.5418 4.2865 -0.3266 36 1 10.2756 5.1778 -0.1358 37 1 4.3910 -1.4129 0.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763914708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:44 Heat of formation + Delta-G solvation = 78.571985 kcal Electronic energy + Delta-G solvation = -21809.392072 eV Core-core repulsion = 18360.218384 eV Total energy + Delta-G solvation = -3449.173688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.12782 -41.21675 -39.59896 -36.15740 -35.48105 -35.25119 -33.51290 -32.43046 -31.09956 -30.09742 -27.91311 -27.61490 -25.11483 -23.79879 -22.90760 -22.11952 -21.41253 -20.18858 -19.43540 -18.28877 -17.95141 -17.24827 -16.92833 -16.42201 -16.05401 -15.99672 -15.86100 -15.44699 -15.29883 -14.81234 -14.40156 -14.33575 -14.13562 -13.93668 -13.65331 -13.21464 -13.17507 -12.98047 -12.90237 -12.62130 -12.02998 -11.93512 -11.63235 -11.49583 -11.27819 -11.11307 -10.98085 -10.51140 -9.92401 -9.55087 -9.01715 -8.75929 -8.60516 -6.54555 -0.05542 0.86217 1.02531 1.04981 1.41988 1.53408 1.57702 1.60879 1.96430 2.21175 2.37079 2.65894 2.89361 3.50313 3.79542 3.87867 3.96909 4.17591 4.22996 4.34659 4.44018 4.48744 4.68554 4.72265 4.75837 4.77441 4.90137 4.95993 5.12592 5.23714 5.40652 5.49803 5.53249 5.57074 5.70995 5.93610 5.99362 6.20369 6.52523 6.61802 6.68606 6.82587 6.84764 7.42441 7.90440 8.27870 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.025267 B = 0.002656 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.917694 B =10541.162435 C =11569.737492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.368 5.368 3 C 0.104 3.896 4 C -0.260 4.260 5 C 0.059 3.941 6 C -0.253 4.253 7 C 0.534 3.466 8 O -0.543 6.543 9 N -0.652 5.652 10 C 0.336 3.664 11 C -0.266 4.266 12 C 0.113 3.887 13 C -0.485 4.485 14 H 0.084 0.916 15 C 0.039 3.961 16 N -0.811 5.811 17 Si 0.988 3.012 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.259 1.259 21 C -0.299 4.299 22 C 0.112 3.888 23 N -0.580 5.580 24 C 0.071 3.929 25 N -0.336 5.336 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.221 0.779 30 H 0.128 0.872 31 H 0.150 0.850 32 H 0.422 0.578 33 H 0.124 0.876 34 H 0.293 0.707 35 H 0.115 0.885 36 H 0.149 0.851 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.781 -4.575 2.153 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.146 5.146 3 C -0.047 4.047 4 C -0.272 4.272 5 C 0.038 3.962 6 C -0.275 4.275 7 C 0.327 3.673 8 O -0.421 6.421 9 N -0.298 5.298 10 C 0.110 3.890 11 C -0.292 4.292 12 C 0.104 3.896 13 C -0.515 4.515 14 H 0.103 0.897 15 C -0.178 4.178 16 N -0.436 5.436 17 Si 0.808 3.192 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.184 1.184 21 C -0.323 4.323 22 C -0.041 4.041 23 N -0.300 5.300 24 C -0.115 4.115 25 N -0.156 5.156 26 H 0.110 0.890 27 H 0.139 0.861 28 H 0.111 0.889 29 H 0.238 0.762 30 H 0.146 0.854 31 H 0.167 0.833 32 H 0.260 0.740 33 H 0.142 0.858 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.166 0.834 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -21.893 -4.629 2.076 22.473 hybrid contribution 2.353 -0.452 -0.107 2.399 sum -19.539 -5.081 1.968 20.285 Atomic orbital electron populations 1.22343 0.71269 1.06454 1.05133 1.48772 1.08532 1.03370 1.53909 1.23762 0.89839 0.95042 0.96025 1.19495 0.92898 0.93180 1.21606 1.21588 0.89689 0.98776 0.86170 1.21586 0.91166 1.00962 1.13753 1.17904 0.84177 0.88590 0.76654 1.90842 1.86854 1.16068 1.48315 1.43424 1.04110 1.10371 1.71902 1.18494 0.86056 0.88864 0.95603 1.21548 0.90675 1.00568 1.16359 1.18026 0.93948 0.91458 0.86120 1.19845 0.93138 0.99981 1.38545 0.89746 1.26850 1.02333 0.97478 0.91188 1.69808 1.35240 1.15025 1.23525 0.85158 0.76858 0.77334 0.79803 1.18398 1.18950 1.18365 1.21832 0.97727 0.95788 1.16940 1.21954 0.88082 0.98766 0.95274 1.67393 1.34161 1.03145 1.25332 1.24504 0.95424 0.94828 0.96744 1.77111 1.02666 1.09515 1.26325 0.89048 0.86133 0.88900 0.76242 0.85428 0.83286 0.74048 0.85837 0.89624 0.86678 0.83411 0.78037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 11.44 127.77 1.46 1.94 16 2 N -0.37 -5.60 3.98 -367.46 -1.46 -7.06 16 3 C 0.10 1.51 11.52 84.32 0.97 2.49 16 4 C -0.26 -5.29 6.08 -20.19 -0.12 -5.41 16 5 C 0.06 1.47 9.64 23.83 0.23 1.70 16 6 C -0.25 -7.18 9.33 22.41 0.21 -6.97 16 7 C 0.53 21.37 7.52 85.11 0.64 22.01 16 8 O -0.54 -26.29 14.36 -4.49 -0.06 -26.36 16 9 N -0.65 -27.21 5.37 -316.60 -1.70 -28.91 16 10 C 0.34 17.30 7.42 132.80 0.99 18.29 16 11 C -0.27 -14.20 8.63 23.01 0.20 -14.01 16 12 C 0.11 6.21 5.60 -21.11 -0.12 6.09 16 13 C -0.48 -25.60 9.12 23.52 0.21 -25.39 16 14 H 0.08 4.25 7.90 -2.91 -0.02 4.22 16 15 C 0.04 1.89 5.20 85.29 0.44 2.33 16 16 N -0.81 -40.52 10.93 21.84 0.24 -40.28 16 17 Si 0.99 36.39 29.59 68.60 2.03 38.42 16 18 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 19 H -0.27 -9.15 7.11 99.48 0.71 -8.45 16 20 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 21 C -0.30 -15.35 9.85 22.61 0.22 -15.13 16 22 C 0.11 5.65 11.10 84.28 0.94 6.59 16 23 N -0.58 -31.27 7.85 -194.32 -1.53 -32.80 16 24 C 0.07 1.46 11.39 85.69 0.98 2.43 16 25 N -0.34 -7.19 12.49 -56.18 -0.70 -7.89 16 26 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.22 1.35 8.06 -2.91 -0.02 1.32 16 30 H 0.13 3.32 7.45 -2.91 -0.02 3.29 16 31 H 0.15 3.23 6.93 -2.91 -0.02 3.21 16 32 H 0.42 14.37 8.66 -92.71 -0.80 13.57 16 33 H 0.12 6.52 6.21 -2.91 -0.02 6.50 16 34 H 0.29 13.07 8.29 -92.71 -0.77 12.30 16 35 H 0.12 5.37 8.06 -2.91 -0.02 5.35 16 36 H 0.15 6.39 8.06 -2.91 -0.02 6.36 16 37 H 0.20 3.24 7.31 -2.91 -0.02 3.22 16 Total: -1.00 -77.95 331.08 4.38 -73.57 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.32 Total: 34.34 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 7.25 Total: -3.03 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -5.15 Total: -116.94 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.06 Total: -26.36 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -77.95 4.38 -73.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763914708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.142 kcal (2) G-P(sol) polarization free energy of solvation -77.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds