Wall clock time and date at job start Tue Mar 31 2020 07:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86801 * 120.00006 * 2 1 4 4 H 1.48502 * 109.47555 * 270.00245 * 3 2 1 5 5 H 1.48502 * 109.46917 * 30.00591 * 3 2 1 6 6 H 1.48501 * 109.47067 * 150.00063 * 3 2 1 7 7 C 1.40023 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.41319 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78679 * 180.02562 * 9 7 2 11 11 C 1.38350 * 119.14771 * 180.02562 * 10 9 7 12 12 C 1.38637 * 118.68174 * 359.74755 * 11 10 9 13 13 C 1.39759 * 119.49027 * 0.47386 * 12 11 10 14 14 N 1.38823 * 119.58508 * 179.79146 * 13 12 11 15 15 C 1.47161 * 111.00253 * 178.77220 * 14 13 12 16 16 C 1.52894 * 108.52039 * 165.35596 * 15 14 13 17 17 C 1.50717 * 109.96899 * 50.40163 * 16 15 14 18 18 C 1.38642 * 118.47250 * 163.16687 * 17 16 15 19 19 C 1.38248 * 120.33214 * 179.51430 * 18 17 16 20 20 F 1.35097 * 120.11649 * 179.97438 * 19 18 17 21 21 C 1.38492 * 119.77526 * 0.02562 * 19 18 17 22 22 C 1.37968 * 119.83677 * 0.10080 * 21 19 18 23 23 C 1.37855 * 121.65597 * 342.89076 * 17 16 15 24 24 C 1.46623 * 111.00226 * 55.77231 * 14 13 12 25 25 N 1.31978 * 120.83288 * 359.51898 * 13 12 11 26 26 H 0.97002 * 120.00432 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.42571 * 0.02562 * 10 9 7 28 28 H 1.07997 * 120.65891 * 179.97438 * 11 10 9 29 29 H 1.08003 * 120.25957 * 180.26744 * 12 11 10 30 30 H 1.09002 * 109.62384 * 285.07066 * 15 14 13 31 31 H 1.08999 * 109.63074 * 45.44914 * 15 14 13 32 32 H 1.08994 * 109.39896 * 290.23513 * 16 15 14 33 33 H 1.09010 * 109.37152 * 170.54419 * 16 15 14 34 34 H 1.08001 * 119.83280 * 359.51117 * 18 17 16 35 35 H 1.08000 * 120.08044 * 180.02562 * 21 19 18 36 36 H 1.08001 * 119.79261 * 179.97438 * 22 21 19 37 37 H 1.09005 * 109.30048 * 55.73075 * 24 14 13 38 38 H 1.09003 * 109.13477 * 296.25305 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0466 -1.4001 5 1 1.4389 2.6526 0.7002 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3010 -2.4365 -0.0005 10 6 2.0085 -3.6514 -0.0005 11 6 1.3035 -4.8418 -0.0011 12 6 -0.0821 -4.7945 0.0038 13 6 -0.7282 -3.5552 -0.0010 14 7 -2.1155 -3.5056 -0.0006 15 6 -2.5935 -2.1139 0.0233 16 6 -4.0777 -2.1039 -0.3435 17 6 -4.8231 -3.1068 0.4992 18 6 -6.2037 -3.0080 0.5777 19 6 -6.9267 -3.9138 1.3315 20 9 -8.2719 -3.8131 1.4055 21 6 -6.2672 -4.9241 2.0115 22 6 -4.8930 -5.0197 1.9346 23 6 -4.1667 -4.1103 1.1793 24 6 -2.6677 -4.2516 1.1345 25 7 -0.0360 -2.4315 -0.0006 26 1 -0.4851 0.8400 -0.0004 27 1 3.0885 -3.6553 -0.0001 28 1 1.8222 -5.7890 -0.0015 29 1 -0.6578 -5.7082 0.0078 30 1 -2.4602 -1.6982 1.0221 31 1 -2.0310 -1.5211 -0.6980 32 1 -4.1921 -2.3600 -1.3968 33 1 -4.4868 -1.1088 -0.1682 34 1 -6.7170 -2.2195 0.0474 35 1 -6.8271 -5.6345 2.6015 36 1 -4.3794 -5.8076 2.4655 37 1 -2.2417 -3.8658 2.0607 38 1 -2.4080 -5.3050 1.0300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:46 Heat of formation + Delta-G solvation = 11.670046 kcal Electronic energy + Delta-G solvation = -23255.490007 eV Core-core repulsion = 19783.495271 eV Total energy + Delta-G solvation = -3471.994736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.88524 -41.40997 -40.00180 -37.68179 -35.43276 -34.04606 -32.81537 -32.12525 -30.63089 -30.10334 -27.43896 -25.96064 -24.69813 -23.55107 -22.86644 -22.39959 -20.62432 -19.39658 -18.28442 -17.86010 -17.28710 -16.85778 -16.61243 -16.45273 -16.29198 -16.09652 -15.67009 -15.14953 -14.94869 -14.71455 -14.30530 -14.27202 -14.14125 -13.86151 -13.49618 -13.11660 -12.83573 -12.77607 -12.76039 -12.60658 -12.35056 -12.18562 -11.97254 -11.80066 -11.55530 -11.25407 -10.55872 -9.93936 -9.84378 -9.49373 -9.46308 -8.78887 -8.28376 -6.49270 0.12926 0.25194 0.88752 1.19101 1.41810 1.52637 1.55374 2.23452 2.54001 2.76255 2.98401 3.23314 3.64443 3.68887 3.88037 3.93017 4.14085 4.16914 4.32434 4.39557 4.40387 4.50409 4.55445 4.68891 4.77921 4.84999 4.91461 4.95254 4.99229 5.05720 5.11663 5.20426 5.24123 5.29403 5.42947 5.58032 5.67342 5.88779 5.90586 5.96565 6.03232 6.31574 6.49353 6.79611 7.06046 8.17479 8.45396 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.020066 B = 0.004149 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.072543 B = 6746.406684 C = 7902.109028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.030 3.970 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.467 4.467 8 H 0.085 0.915 9 C 0.241 3.759 10 C -0.318 4.318 11 C -0.041 4.041 12 C -0.321 4.321 13 C 0.302 3.698 14 N -0.476 5.476 15 C 0.082 3.918 16 C -0.074 4.074 17 C -0.048 4.048 18 C -0.157 4.157 19 C 0.084 3.916 20 F -0.145 7.145 21 C -0.152 4.152 22 C -0.080 4.080 23 C -0.098 4.098 24 C 0.108 3.892 25 N -0.532 5.532 26 H 0.277 0.723 27 H 0.106 0.894 28 H 0.134 0.866 29 H 0.122 0.878 30 H 0.019 0.981 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.037 0.963 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.823 -4.975 3.085 12.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.192 4.192 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.499 4.499 8 H 0.104 0.896 9 C 0.115 3.885 10 C -0.340 4.340 11 C -0.065 4.065 12 C -0.346 4.346 13 C 0.064 3.936 14 N -0.195 5.195 15 C -0.046 4.046 16 C -0.112 4.112 17 C -0.048 4.048 18 C -0.175 4.175 19 C 0.065 3.935 20 F -0.124 7.124 21 C -0.170 4.170 22 C -0.099 4.099 23 C -0.099 4.099 24 C -0.018 4.018 25 N -0.251 5.251 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.152 0.848 29 H 0.140 0.860 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.166 0.834 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.055 0.945 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.690 -4.259 2.659 12.723 hybrid contribution 1.066 0.316 0.495 1.217 sum -10.625 -3.943 3.155 11.763 Atomic orbital electron populations 1.70175 1.08482 1.28772 1.29220 1.26845 0.95770 1.04010 0.92589 0.85207 0.79026 0.76179 0.79282 1.18952 1.19352 1.18297 1.19920 0.94634 0.90437 1.44859 0.89642 1.18805 0.88117 0.93291 0.88326 1.21839 0.99289 0.93761 1.19146 1.21107 0.93718 0.97442 0.94254 1.21049 0.94796 0.96319 1.22446 1.20267 0.89389 0.90767 0.93129 1.59505 1.04468 1.14978 1.40502 1.21750 0.94348 0.87756 1.00728 1.20660 0.92909 0.98134 0.99446 1.19557 0.92871 0.95751 0.96625 1.21160 0.93489 1.01065 1.01829 1.17771 0.76841 0.98208 1.00723 1.91474 1.29854 1.95941 1.95136 1.21278 0.94936 0.99051 1.01775 1.21110 0.93096 0.98382 0.97269 1.19736 0.94513 0.96515 0.99100 1.20923 0.90680 0.99745 0.90427 1.68621 1.08018 1.26220 1.22194 0.91189 0.87594 0.84827 0.86040 0.96211 0.89903 0.89508 0.88561 0.83441 0.82128 0.82411 0.94469 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.30 10.96 21.84 0.24 -38.06 16 2 C 0.03 1.51 5.50 85.29 0.47 1.98 16 3 Si 0.98 37.54 29.56 68.60 2.03 39.57 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 7 C -0.47 -25.08 9.14 23.46 0.21 -24.87 16 8 H 0.09 4.33 7.85 -2.91 -0.02 4.31 16 9 C 0.24 13.26 6.55 40.19 0.26 13.53 16 10 C -0.32 -15.60 9.83 22.87 0.22 -15.38 16 11 C -0.04 -1.77 10.15 22.39 0.23 -1.54 16 12 C -0.32 -14.02 9.29 22.73 0.21 -13.81 16 13 C 0.30 14.46 6.39 133.40 0.85 15.31 16 14 N -0.48 -19.45 4.70 -706.46 -3.32 -22.78 16 15 C 0.08 3.30 4.92 86.22 0.42 3.72 16 16 C -0.07 -2.28 5.94 29.82 0.18 -2.10 16 17 C -0.05 -1.36 5.77 -19.85 -0.11 -1.48 16 18 C -0.16 -3.87 9.64 22.37 0.22 -3.66 16 19 C 0.08 1.98 7.30 22.33 0.16 2.14 16 20 F -0.15 -3.46 17.27 44.97 0.78 -2.68 16 21 C -0.15 -3.12 10.03 22.27 0.22 -2.89 16 22 C -0.08 -1.77 9.64 22.33 0.22 -1.56 16 23 C -0.10 -2.80 5.79 -19.86 -0.12 -2.91 16 24 C 0.11 3.63 4.87 85.59 0.42 4.04 16 25 N -0.53 -28.77 5.97 -186.59 -1.11 -29.88 16 26 H 0.28 12.93 8.29 -92.71 -0.77 12.16 16 27 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 28 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 29 H 0.12 4.56 7.17 -2.91 -0.02 4.54 16 30 H 0.02 0.87 8.05 -2.39 -0.02 0.85 16 31 H 0.08 3.91 6.78 -2.39 -0.02 3.90 16 32 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.04 1.36 8.12 -2.38 -0.02 1.34 16 38 H 0.10 3.12 6.97 -2.39 -0.02 3.11 16 Total: -1.00 -61.51 320.33 3.75 -57.75 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 1.08 Total: 25.55 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 4.07 Total: -29.48 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -4.20 Total: -90.72 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -61.51 3.75 -57.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.421 kcal (2) G-P(sol) polarization free energy of solvation -61.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds