Wall clock time and date at job start Tue Mar 31 2020 07:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46919 * 2 1 4 4 N 1.46500 * 109.46641 * 119.99595 * 2 1 3 5 5 C 1.40799 * 120.00257 * 274.99697 * 4 2 1 6 6 C 1.40222 * 126.06576 * 359.69558 * 5 4 2 7 7 N 1.30863 * 108.36463 * 179.87268 * 6 5 4 8 8 N 1.40076 * 108.36060 * 0.38331 * 7 6 5 9 9 C 1.46496 * 126.07155 * 179.73200 * 8 7 6 10 10 C 1.52997 * 109.47373 * 305.02443 * 9 8 7 11 11 F 1.39901 * 109.47190 * 179.97438 * 10 9 8 12 12 C 1.35706 * 126.06842 * 179.97438 * 5 4 2 13 13 C 1.50696 * 109.47467 * 239.99762 * 2 1 3 14 14 O 1.21280 * 120.00095 * 240.00497 * 13 2 1 15 15 N 1.34771 * 119.99966 * 60.00047 * 13 2 1 16 16 C 1.46496 * 120.00157 * 359.97438 * 15 13 2 17 17 C 1.46506 * 120.00084 * 180.02562 * 15 13 2 18 18 C 1.50699 * 109.46928 * 270.00021 * 17 15 13 19 19 H 1.08003 * 119.99963 * 0.02562 * 18 17 15 20 20 C 1.37873 * 119.99865 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00518 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99987 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46922 * 90.00621 * 22 20 18 24 24 H 1.48500 * 109.47411 * 210.00442 * 22 20 18 25 25 H 1.48494 * 109.47378 * 330.00637 * 22 20 18 26 26 H 1.09002 * 109.47276 * 300.00381 * 1 2 3 27 27 H 1.09001 * 109.46709 * 60.00399 * 1 2 3 28 28 H 1.08999 * 109.47271 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00245 * 95.00130 * 4 2 1 30 30 H 1.08004 * 125.82050 * 0.02562 * 6 5 4 31 31 H 1.09000 * 109.47071 * 65.02702 * 9 8 7 32 32 H 1.08996 * 109.47106 * 185.01942 * 9 8 7 33 33 H 1.09000 * 109.47233 * 300.00160 * 10 9 8 34 34 H 1.09006 * 109.46812 * 60.00115 * 10 9 8 35 35 H 1.07995 * 126.22745 * 359.94576 * 12 5 4 36 36 H 1.08995 * 109.47445 * 269.99904 * 16 15 13 37 37 H 1.09001 * 109.47057 * 30.00532 * 16 15 13 38 38 H 1.08999 * 109.47333 * 150.00092 * 16 15 13 39 39 H 1.09004 * 109.47073 * 29.99849 * 17 15 13 40 40 H 1.09000 * 109.47212 * 149.99932 * 17 15 13 41 41 H 0.96992 * 120.00316 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1527 0.0119 2.4091 6 6 1.8636 1.3686 2.6137 7 7 2.1093 1.6582 3.8660 8 7 2.5722 0.5003 4.5040 9 6 2.9668 0.3896 5.9105 10 6 4.0376 1.4365 6.2237 11 9 4.4140 1.3311 7.5670 12 6 2.5902 -0.5027 3.5861 13 6 2.0324 -0.7104 -1.2304 14 8 2.7296 -1.6965 -1.1190 15 7 1.7069 -0.2500 -2.4545 16 6 0.8642 0.9407 -2.5890 17 6 2.1949 -0.9410 -3.6506 18 6 3.5226 -0.3580 -4.0610 19 1 3.9594 0.4464 -3.4878 20 6 4.1801 -0.8523 -5.1674 21 7 3.6484 -1.8322 -5.8651 22 14 5.8255 -0.1292 -5.6765 23 1 6.9217 -0.8705 -5.0026 24 1 5.9825 -0.2440 -7.1487 25 1 5.8805 1.3016 -5.2830 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 2.2489 -1.6317 1.1528 30 1 1.4979 2.0568 1.8659 31 1 2.0974 0.5577 6.5461 32 1 3.3668 -0.6067 6.0983 33 1 4.9070 1.2684 5.5882 34 1 3.6375 2.4329 6.0360 35 1 2.8968 -1.5232 3.7619 36 1 -0.1836 0.6424 -2.6226 37 1 1.0273 1.5995 -1.7361 38 1 1.1219 1.4663 -3.5085 39 1 2.3156 -2.0023 -3.4333 40 1 1.4769 -0.8155 -4.4611 41 1 4.1108 -2.1797 -6.6437 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600610708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:07 Heat of formation + Delta-G solvation = 7.529646 kcal Electronic energy + Delta-G solvation = -23725.546259 eV Core-core repulsion = 19978.355814 eV Total energy + Delta-G solvation = -3747.190446 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.155 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.08659 -41.15829 -39.36403 -35.84083 -34.95425 -33.86788 -32.68648 -31.06405 -29.64019 -27.80085 -27.12833 -26.10596 -24.06029 -23.95161 -22.24272 -21.24860 -20.25255 -18.54205 -17.70376 -16.83945 -16.70187 -16.51699 -15.93758 -15.78755 -15.48474 -14.92810 -14.86441 -14.60111 -14.32960 -14.06530 -13.74909 -13.51524 -13.14953 -12.92942 -12.58918 -12.31998 -12.14687 -12.05959 -11.86117 -11.62173 -11.35341 -11.33236 -11.12398 -10.90843 -10.77687 -10.61091 -10.19300 -10.10865 -9.66613 -9.46968 -8.94467 -8.46376 -7.71839 -7.05582 -6.07397 -4.12302 1.76085 2.22850 2.93174 3.29611 3.31304 3.35966 3.38840 3.50893 3.92748 4.07830 4.24743 4.42577 4.58232 4.66047 4.83234 4.89749 4.96035 5.06469 5.22459 5.27376 5.33386 5.37676 5.48221 5.58134 5.67231 5.75532 5.81562 5.89720 6.11685 6.29191 6.31451 6.86462 6.97186 7.36926 7.42806 7.48795 7.59462 7.88777 8.05843 8.19346 8.34835 8.84621 9.00162 9.52963 11.00716 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.002923 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.175948 B = 9576.599726 C =10359.850152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.144 3.856 3 H 0.091 0.909 4 N -0.723 5.723 5 C 0.082 3.918 6 C 0.014 3.986 7 N -0.278 5.278 8 N -0.378 5.378 9 C 0.119 3.881 10 C 0.051 3.949 11 F -0.211 7.211 12 C -0.035 4.035 13 C 0.502 3.498 14 O -0.538 6.538 15 N -0.597 5.597 16 C 0.079 3.921 17 C 0.245 3.755 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.407 0.593 30 H 0.181 0.819 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.171 0.829 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 6.316 19.601 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.034 3.966 3 H 0.109 0.891 4 N -0.361 5.361 5 C -0.026 4.026 6 C -0.175 4.175 7 N -0.101 5.101 8 N -0.168 5.168 9 C -0.004 4.004 10 C -0.005 4.005 11 F -0.192 7.192 12 C -0.182 4.182 13 C 0.287 3.713 14 O -0.415 6.415 15 N -0.329 5.329 16 C -0.065 4.065 17 C 0.126 3.874 18 C -0.566 4.566 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.245 0.755 30 H 0.198 0.802 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.188 0.812 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.935 6.685 20.382 22.256 hybrid contribution 1.042 -0.613 -1.057 1.606 sum -4.893 6.071 19.325 20.839 Atomic orbital electron populations 1.22488 0.94567 1.03222 1.03004 1.20543 0.94398 0.96781 0.84869 0.89128 1.43601 1.75987 1.12178 1.04295 1.17695 1.05479 0.91971 0.87469 1.23580 1.04699 0.94833 0.94388 1.77125 1.18764 1.07012 1.07156 1.47799 1.53808 1.06920 1.08245 1.21998 0.98891 1.01202 0.78347 1.22232 0.98714 1.01404 0.78188 1.92785 1.92806 1.97598 1.36022 1.21627 1.12195 0.95394 0.88935 1.20328 0.81108 0.85305 0.84538 1.90655 1.37912 1.26903 1.86025 1.48093 1.49473 1.28204 1.07166 1.21841 0.93871 0.88089 1.02693 1.19315 0.94292 0.93695 0.80071 1.21420 1.04795 1.19130 1.11234 0.92461 1.24934 0.97961 0.94952 0.96245 1.69926 1.38962 1.26084 1.18403 0.86496 0.83963 0.79436 0.77514 1.20561 1.21120 1.19897 0.91884 0.90304 0.92064 0.75536 0.80202 0.89077 0.87719 0.90032 0.89221 0.81189 0.93150 0.92198 0.90669 0.93827 0.94833 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.14 37.16 0.34 -1.67 16 2 C 0.14 2.06 2.19 -69.08 -0.15 1.91 16 3 H 0.09 1.19 6.41 -51.93 -0.33 0.86 16 4 N -0.72 -10.19 5.19 -53.45 -0.28 -10.47 16 5 C 0.08 1.05 6.94 -83.90 -0.58 0.46 16 6 C 0.01 0.17 11.15 -17.22 -0.19 -0.03 16 7 N -0.28 -3.41 12.41 30.70 0.38 -3.03 16 8 N -0.38 -3.99 3.71 -61.00 -0.23 -4.22 16 9 C 0.12 0.86 6.97 -4.05 -0.03 0.83 16 10 C 0.05 0.38 7.74 37.16 0.29 0.67 16 11 F -0.21 -1.88 17.36 2.25 0.04 -1.84 16 12 C -0.04 -0.39 11.53 -16.62 -0.19 -0.58 16 13 C 0.50 9.94 7.14 -10.99 -0.08 9.86 16 14 O -0.54 -12.98 15.42 5.56 0.09 -12.89 16 15 N -0.60 -12.07 2.86 -182.96 -0.52 -12.59 16 16 C 0.08 1.15 8.80 59.84 0.53 1.68 16 17 C 0.25 6.27 5.16 -5.19 -0.03 6.24 16 18 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 19 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 22 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.82 4.53 -51.93 -0.24 0.59 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.41 6.14 7.92 -40.82 -0.32 5.82 16 30 H 0.18 1.79 7.45 -52.48 -0.39 1.40 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16 37 H 0.06 0.70 6.01 -51.93 -0.31 0.38 16 38 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 39 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 40 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -33.92 348.49 -5.75 -39.67 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.68 Total: 3.07 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -0.52 Total: 5.95 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.09 Total: -55.91 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.92 -5.75 -39.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600610708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.201 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds