Wall clock time and date at job start Tue Mar 31 2020 07:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46919 * 2 1 4 4 N 1.46500 * 109.46641 * 119.99595 * 2 1 3 5 5 C 1.40799 * 120.00257 * 274.99697 * 4 2 1 6 6 C 1.40222 * 126.06576 * 359.69558 * 5 4 2 7 7 N 1.30863 * 108.36463 * 179.87268 * 6 5 4 8 8 N 1.40076 * 108.36060 * 0.38331 * 7 6 5 9 9 C 1.46496 * 126.07155 * 179.73200 * 8 7 6 10 10 C 1.52997 * 109.47373 * 305.02443 * 9 8 7 11 11 F 1.39901 * 109.47190 * 179.97438 * 10 9 8 12 12 C 1.35706 * 126.06842 * 179.97438 * 5 4 2 13 13 C 1.50696 * 109.47467 * 239.99762 * 2 1 3 14 14 O 1.21280 * 120.00095 * 240.00497 * 13 2 1 15 15 N 1.34771 * 119.99966 * 60.00047 * 13 2 1 16 16 C 1.46496 * 120.00157 * 359.97438 * 15 13 2 17 17 C 1.46506 * 120.00084 * 180.02562 * 15 13 2 18 18 C 1.50699 * 109.46928 * 270.00021 * 17 15 13 19 19 H 1.08003 * 119.99963 * 0.02562 * 18 17 15 20 20 C 1.37873 * 119.99865 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00518 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99987 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46922 * 90.00621 * 22 20 18 24 24 H 1.48500 * 109.47411 * 210.00442 * 22 20 18 25 25 H 1.48494 * 109.47378 * 330.00637 * 22 20 18 26 26 H 1.09002 * 109.47276 * 300.00381 * 1 2 3 27 27 H 1.09001 * 109.46709 * 60.00399 * 1 2 3 28 28 H 1.08999 * 109.47271 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00245 * 95.00130 * 4 2 1 30 30 H 1.08004 * 125.82050 * 0.02562 * 6 5 4 31 31 H 1.09000 * 109.47071 * 65.02702 * 9 8 7 32 32 H 1.08996 * 109.47106 * 185.01942 * 9 8 7 33 33 H 1.09000 * 109.47233 * 300.00160 * 10 9 8 34 34 H 1.09006 * 109.46812 * 60.00115 * 10 9 8 35 35 H 1.07995 * 126.22745 * 359.94576 * 12 5 4 36 36 H 1.08995 * 109.47445 * 269.99904 * 16 15 13 37 37 H 1.09001 * 109.47057 * 30.00532 * 16 15 13 38 38 H 1.08999 * 109.47333 * 150.00092 * 16 15 13 39 39 H 1.09004 * 109.47073 * 29.99849 * 17 15 13 40 40 H 1.09000 * 109.47212 * 149.99932 * 17 15 13 41 41 H 0.96992 * 120.00316 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1527 0.0119 2.4091 6 6 1.8636 1.3686 2.6137 7 7 2.1093 1.6582 3.8660 8 7 2.5722 0.5003 4.5040 9 6 2.9668 0.3896 5.9105 10 6 4.0376 1.4365 6.2237 11 9 4.4140 1.3311 7.5670 12 6 2.5902 -0.5027 3.5861 13 6 2.0324 -0.7104 -1.2304 14 8 2.7296 -1.6965 -1.1190 15 7 1.7069 -0.2500 -2.4545 16 6 0.8642 0.9407 -2.5890 17 6 2.1949 -0.9410 -3.6506 18 6 3.5226 -0.3580 -4.0610 19 1 3.9594 0.4464 -3.4878 20 6 4.1801 -0.8523 -5.1674 21 7 3.6484 -1.8322 -5.8651 22 14 5.8255 -0.1292 -5.6765 23 1 6.9217 -0.8705 -5.0026 24 1 5.9825 -0.2440 -7.1487 25 1 5.8805 1.3016 -5.2830 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 2.2489 -1.6317 1.1528 30 1 1.4979 2.0568 1.8659 31 1 2.0974 0.5577 6.5461 32 1 3.3668 -0.6067 6.0983 33 1 4.9070 1.2684 5.5882 34 1 3.6375 2.4329 6.0360 35 1 2.8968 -1.5232 3.7619 36 1 -0.1836 0.6424 -2.6226 37 1 1.0273 1.5995 -1.7361 38 1 1.1219 1.4663 -3.5085 39 1 2.3156 -2.0023 -3.4333 40 1 1.4769 -0.8155 -4.4611 41 1 4.1108 -2.1797 -6.6437 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600610708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:06 Heat of formation + Delta-G solvation = -15.991192 kcal Electronic energy + Delta-G solvation = -23726.566199 eV Core-core repulsion = 19978.355814 eV Total energy + Delta-G solvation = -3748.210386 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.155 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.74475 -42.02704 -40.85335 -36.99474 -36.57774 -34.89552 -34.47984 -32.17033 -30.52714 -29.46299 -28.14123 -27.47765 -25.66175 -24.70239 -23.71712 -22.09133 -21.23532 -19.92659 -18.76920 -18.53879 -17.87992 -17.37813 -17.31973 -16.69247 -16.48874 -16.39771 -16.15030 -15.78978 -15.31205 -15.14737 -14.98222 -14.50587 -14.29049 -14.17484 -13.85646 -13.58219 -13.43760 -13.35313 -13.16233 -12.89611 -12.72861 -12.58906 -12.50311 -12.27943 -12.13667 -12.02433 -11.68301 -11.57687 -11.07355 -10.64783 -10.52046 -10.29255 -9.41671 -8.22394 -8.01064 -6.36923 0.91785 1.36901 1.39534 1.47251 1.49359 1.79625 2.03254 2.22484 2.40756 2.82257 3.07435 3.33049 3.63769 3.69392 3.92636 4.03251 4.04302 4.15520 4.27957 4.30683 4.41789 4.44522 4.64335 4.69977 4.77865 4.86577 4.88314 4.89905 5.02299 5.05313 5.23565 5.34847 5.44934 5.56136 5.83221 6.06251 6.09048 6.40497 6.69720 6.71754 6.79054 7.01520 7.27731 7.45011 8.84566 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.002923 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.175948 B = 9576.599726 C =10359.850152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.110 0.890 4 N -0.731 5.731 5 C 0.057 3.943 6 C 0.009 3.991 7 N -0.297 5.297 8 N -0.375 5.375 9 C 0.114 3.886 10 C 0.056 3.944 11 F -0.218 7.218 12 C -0.028 4.028 13 C 0.492 3.508 14 O -0.593 6.593 15 N -0.604 5.604 16 C 0.071 3.929 17 C 0.259 3.741 18 C -0.542 4.542 19 H 0.053 0.947 20 C 0.008 3.992 21 N -0.928 5.928 22 Si 0.965 3.035 23 H -0.282 1.282 24 H -0.275 1.275 25 H -0.261 1.261 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.399 0.601 30 H 0.198 0.802 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.191 0.809 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.066 0.934 39 H -0.002 1.002 40 H 0.027 0.973 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.557 8.095 20.937 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 H 0.127 0.873 4 N -0.369 5.369 5 C -0.050 4.050 6 C -0.179 4.179 7 N -0.120 5.120 8 N -0.164 5.164 9 C -0.008 4.008 10 C 0.000 4.000 11 F -0.199 7.199 12 C -0.175 4.175 13 C 0.280 3.720 14 O -0.474 6.474 15 N -0.335 5.335 16 C -0.071 4.071 17 C 0.137 3.863 18 C -0.580 4.580 19 H 0.071 0.929 20 C -0.191 4.191 21 N -0.568 5.568 22 Si 0.790 3.210 23 H -0.208 1.208 24 H -0.200 1.200 25 H -0.185 1.185 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.066 0.934 29 H 0.235 0.765 30 H 0.215 0.785 31 H 0.120 0.880 32 H 0.146 0.854 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.208 0.792 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.016 0.984 40 H 0.045 0.955 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.215 8.530 21.760 24.184 hybrid contribution 1.108 -1.204 -1.389 2.146 sum -5.107 7.326 20.371 22.243 Atomic orbital electron populations 1.22440 0.92054 1.02998 1.04793 1.20488 0.96005 0.96398 0.82109 0.87262 1.43575 1.76823 1.11828 1.04693 1.17869 1.07271 0.92513 0.87377 1.23878 1.04506 0.94814 0.94728 1.77101 1.19543 1.07923 1.07452 1.48066 1.52890 1.06320 1.09133 1.22251 0.99320 1.02399 0.76817 1.22173 0.98815 1.01350 0.77665 1.92773 1.92885 1.97623 1.36651 1.22043 1.10489 0.96308 0.88657 1.21404 0.80024 0.84793 0.85807 1.90617 1.40366 1.29458 1.86933 1.48086 1.50006 1.29497 1.05900 1.22193 0.94389 0.86451 1.04026 1.18770 0.93741 0.91723 0.82018 1.21705 1.05885 1.19074 1.11348 0.92885 1.25838 1.01718 0.95280 0.96298 1.70041 1.40609 1.27258 1.18901 0.85446 0.78956 0.79090 0.77510 1.20824 1.19973 1.18546 0.89650 0.88795 0.93355 0.76502 0.78502 0.88027 0.85409 0.89947 0.89621 0.79178 0.90236 0.88483 0.91470 0.98425 0.95530 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 9.14 71.98 0.66 -2.70 16 2 C 0.16 4.32 2.19 44.25 0.10 4.42 16 3 H 0.11 2.55 6.41 -2.38 -0.02 2.54 16 4 N -0.73 -19.94 5.19 -323.01 -1.68 -21.62 16 5 C 0.06 1.35 6.94 37.59 0.26 1.62 16 6 C 0.01 0.19 11.15 85.32 0.95 1.14 16 7 N -0.30 -6.68 12.41 -56.77 -0.70 -7.38 16 8 N -0.38 -7.10 3.71 -346.91 -1.29 -8.38 16 9 C 0.11 1.38 6.97 86.38 0.60 1.98 16 10 C 0.06 0.74 7.74 71.98 0.56 1.30 16 11 F -0.22 -3.54 17.36 44.97 0.78 -2.76 16 12 C -0.03 -0.57 11.53 83.46 0.96 0.40 16 13 C 0.49 19.61 7.14 87.66 0.63 20.23 16 14 O -0.59 -29.79 15.42 -3.03 -0.05 -29.84 16 15 N -0.60 -24.45 2.86 -851.14 -2.43 -26.88 16 16 C 0.07 1.93 8.80 127.77 1.12 3.05 16 17 C 0.26 13.71 5.16 85.63 0.44 14.15 16 18 C -0.54 -30.90 9.39 25.60 0.24 -30.66 16 19 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 20 C 0.01 0.44 5.46 84.65 0.46 0.90 16 21 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 22 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.09 1.62 4.53 -2.39 -0.01 1.61 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.40 12.13 7.92 -92.71 -0.73 11.39 16 30 H 0.20 3.33 7.45 -2.91 -0.02 3.30 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.13 0.97 8.07 -2.39 -0.02 0.95 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.08 1.71 6.95 -2.39 -0.02 1.70 16 37 H 0.10 1.91 6.01 -2.39 -0.01 1.89 16 38 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 39 H 0.00 -0.15 7.42 -2.38 -0.02 -0.16 16 40 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 41 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -76.22 348.49 4.25 -71.97 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.32 Total: 17.89 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 6.98 Total: 15.83 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -5.81 Total: -119.84 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.05 Total: -29.84 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -76.22 4.25 -71.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600610708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.982 kcal (2) G-P(sol) polarization free energy of solvation -76.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds