Wall clock time and date at job start Tue Mar 31 2020 08:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99955 * 2 1 4 4 H 1.48504 * 109.46553 * 269.99854 * 3 2 1 5 5 H 1.48499 * 109.47033 * 29.99443 * 3 2 1 6 6 H 1.48500 * 109.47042 * 149.99909 * 3 2 1 7 7 C 1.37872 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00394 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99780 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.49590 * 59.99834 * 9 7 2 11 11 C 1.53039 * 109.49593 * 180.02562 * 9 7 2 12 12 C 1.53048 * 109.53763 * 181.35012 * 11 9 7 13 13 C 1.53193 * 109.30993 * 298.63632 * 12 11 9 14 14 N 1.46928 * 108.77828 * 54.62937 * 13 12 11 15 15 C 1.34774 * 120.62367 * 126.41213 * 14 13 12 16 16 O 1.21589 * 119.99629 * 174.96916 * 15 14 13 17 17 N 1.34771 * 120.00635 * 354.97132 * 15 14 13 18 18 O 1.41607 * 120.00417 * 185.06773 * 17 15 14 19 19 C 1.42898 * 114.00212 * 179.97438 * 18 17 15 20 20 C 1.53180 * 109.54198 * 274.82276 * 19 18 17 21 21 C 1.53098 * 109.15566 * 183.24207 * 20 19 18 22 22 O 1.42903 * 109.49084 * 57.47101 * 21 20 19 23 23 C 1.42903 * 114.09718 * 298.89073 * 22 21 20 24 24 C 1.53096 * 109.41646 * 61.15643 * 23 22 21 25 25 C 1.46995 * 118.75529 * 306.39664 * 14 13 12 26 26 H 0.97001 * 119.99628 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46270 * 301.37093 * 11 9 7 28 28 H 1.09001 * 109.46679 * 61.34430 * 11 9 7 29 29 H 1.09001 * 109.49495 * 58.58548 * 12 11 9 30 30 H 1.09000 * 109.49844 * 178.68106 * 12 11 9 31 31 H 1.08999 * 109.58860 * 174.42515 * 13 12 11 32 32 H 1.09004 * 109.58622 * 294.84579 * 13 12 11 33 33 H 0.97001 * 119.99538 * 5.06194 * 17 15 14 34 34 H 1.09000 * 109.53984 * 34.99349 * 19 18 17 35 35 H 1.09000 * 109.51745 * 303.05565 * 20 19 18 36 36 H 1.08993 * 109.52388 * 63.24103 * 20 19 18 37 37 H 1.09003 * 109.40857 * 297.49088 * 21 20 19 38 38 H 1.09005 * 109.49427 * 177.50539 * 21 20 19 39 39 H 1.08999 * 109.48186 * 301.17621 * 23 22 21 40 40 H 1.09000 * 109.48887 * 181.14061 * 23 22 21 41 41 H 1.08996 * 109.52370 * 182.48651 * 24 23 22 42 42 H 1.09005 * 109.57441 * 62.32636 * 24 23 22 43 43 H 1.08994 * 109.57890 * 293.82247 * 25 14 13 44 44 H 1.09000 * 109.62340 * 173.37479 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6246 -2.5575 -0.8895 11 6 2.2451 -3.6627 0.0018 12 6 1.4812 -4.9885 -0.0322 13 6 0.6044 -5.1001 1.2191 14 7 -0.2543 -3.9108 1.3026 15 6 -1.5907 -4.0360 1.4234 16 8 -2.2818 -3.0485 1.5835 17 7 -2.1612 -5.2557 1.3669 18 8 -3.5718 -5.3792 1.3860 19 6 -4.0380 -6.7284 1.3199 20 6 -4.1169 -7.1721 -0.1441 21 6 -4.6935 -8.5889 -0.2092 22 8 -5.9769 -8.6107 0.4188 23 6 -5.9560 -8.2512 1.8017 24 6 -5.4323 -6.8200 1.9476 25 6 0.3717 -2.5818 1.2521 26 1 -0.4849 0.8401 -0.0004 27 1 2.8885 -3.5918 -0.8752 28 1 2.8551 -3.6184 0.9041 29 1 0.8520 -5.0231 -0.9216 30 1 2.1899 -5.8163 -0.0549 31 1 -0.0153 -5.9944 1.1524 32 1 1.2371 -5.1568 2.1048 33 1 -1.6056 -6.0490 1.3131 34 1 -3.3509 -7.3785 1.8614 35 1 -4.7641 -6.4911 -0.6967 36 1 -3.1187 -7.1631 -0.5817 37 1 -4.0241 -9.2765 0.3078 38 1 -4.7934 -8.8934 -1.2511 39 1 -5.3031 -8.9342 2.3450 40 1 -6.9654 -8.3121 2.2086 41 1 -5.3739 -6.5594 3.0043 42 1 -6.1066 -6.1308 1.4391 43 1 0.9855 -2.4332 2.1405 44 1 -0.4012 -1.8146 1.2069 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852257697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:49 Heat of formation + Delta-G solvation = -68.472776 kcal Electronic energy + Delta-G solvation = -25113.931859 eV Core-core repulsion = 21454.613255 eV Total energy + Delta-G solvation = -3659.318604 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.95222 -39.43453 -37.39137 -36.37200 -33.64561 -33.00690 -31.89533 -31.50503 -30.59991 -29.55053 -25.11504 -24.85995 -24.24134 -23.89782 -21.86801 -20.92859 -20.27227 -18.90052 -18.30887 -17.21682 -16.54454 -16.40179 -16.12845 -15.38696 -15.17519 -14.86621 -14.63045 -14.34364 -14.04640 -13.79375 -13.61928 -13.39592 -13.03756 -12.72665 -12.61034 -12.47732 -12.10131 -11.96376 -11.68356 -11.50434 -11.00155 -10.93963 -10.90166 -10.61715 -10.49853 -10.43873 -10.23074 -10.05132 -9.90579 -9.46798 -9.12053 -8.97786 -8.61048 -8.41426 -7.71380 -5.97656 -4.07083 1.93355 3.32651 3.40164 3.42178 3.49749 3.82408 4.01151 4.31547 4.37517 4.41849 4.45422 4.58479 4.66484 4.82313 5.04427 5.12675 5.23290 5.30067 5.31996 5.34038 5.42794 5.44910 5.55050 5.63812 5.78537 5.88774 5.91864 6.09738 6.27459 6.48615 6.60595 6.74055 6.79850 6.95015 6.97577 7.14214 7.28918 7.42367 7.72468 7.91064 8.05000 8.40173 8.47077 8.96580 9.23141 9.58698 11.07459 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.027028 B = 0.003252 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.702943 B = 8608.606539 C = 9157.354038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.115 3.885 14 N -0.614 5.614 15 C 0.716 3.284 16 O -0.563 6.563 17 N -0.624 5.624 18 O -0.122 6.122 19 C 0.062 3.938 20 C -0.182 4.182 21 C 0.065 3.935 22 O -0.382 6.382 23 C 0.067 3.933 24 C -0.148 4.148 25 C 0.131 3.869 26 H 0.264 0.736 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.396 0.604 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 -19.931 2.947 20.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.355 5.355 15 C 0.418 3.582 16 O -0.438 6.438 17 N -0.334 5.334 18 O -0.125 6.125 19 C 0.003 3.997 20 C -0.220 4.220 21 C -0.012 4.012 22 O -0.300 6.300 23 C -0.010 4.010 24 C -0.187 4.187 25 C 0.012 3.988 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.238 0.762 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.061 0.939 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.823 -18.917 2.979 20.329 hybrid contribution 1.014 0.262 0.037 1.048 sum -5.809 -18.655 3.015 19.770 Atomic orbital electron populations 1.69889 1.05724 1.26937 1.48986 1.25068 0.94878 0.99294 0.94814 0.86589 0.79786 0.83527 0.78062 1.20716 1.21161 1.19918 1.21056 0.92882 0.90043 1.52106 0.92312 1.19006 0.92606 0.92289 0.94123 0.95244 1.21617 0.98541 0.93925 1.00659 1.21964 0.98623 0.99327 0.97330 1.21544 0.93404 0.87002 0.98999 1.47778 1.02209 1.09193 1.76348 1.15449 0.82495 0.81539 0.78679 1.90947 1.61207 1.35992 1.55630 1.46661 0.94216 1.08072 1.84419 1.90615 1.01372 1.23811 1.96690 1.22553 0.96305 0.84993 0.95852 1.22807 1.03196 0.98424 0.97542 1.22571 0.84792 0.95043 0.98822 1.87956 1.29507 1.89045 1.23524 1.22576 1.02342 0.93202 0.82876 1.22252 0.94879 0.99014 1.02591 1.22305 0.98259 0.79877 0.98397 0.92562 0.92940 0.93082 0.92089 0.92208 0.92651 0.91695 0.76227 0.90929 0.89631 0.90256 0.93046 0.88302 0.92884 0.87951 0.89574 0.89498 0.93877 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.81 11.40 55.43 0.63 -25.18 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.03 8.56 -34.44 -0.29 -14.33 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.75 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.11 5.11 -26.69 -0.14 -2.25 16 12 C -0.13 -2.05 6.08 -26.61 -0.16 -2.21 16 13 C 0.11 1.69 6.43 -3.71 -0.02 1.67 16 14 N -0.61 -12.40 2.97 -178.45 -0.53 -12.93 16 15 C 0.72 15.44 8.44 -86.92 -0.73 14.71 16 16 O -0.56 -15.19 16.19 -12.80 -0.21 -15.39 16 17 N -0.62 -10.25 6.29 27.63 0.17 -10.07 16 18 O -0.12 -2.00 10.76 -29.56 -0.32 -2.32 16 19 C 0.06 0.68 2.83 -26.55 -0.08 0.60 16 20 C -0.18 -1.81 5.80 -26.59 -0.15 -1.96 16 21 C 0.06 0.52 6.84 37.21 0.25 0.78 16 22 O -0.38 -3.71 10.77 -35.23 -0.38 -4.09 16 23 C 0.07 0.51 6.84 37.21 0.25 0.77 16 24 C -0.15 -1.40 5.79 -26.59 -0.15 -1.55 16 25 C 0.13 3.19 5.39 -3.68 -0.02 3.17 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.62 5.57 -51.93 -0.29 0.34 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.40 4.89 5.89 -40.82 -0.24 4.65 16 34 H 0.07 0.65 7.95 -51.93 -0.41 0.24 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.12 3.57 5.16 -51.93 -0.27 3.30 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -34.11 347.64 -9.05 -43.16 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.09 Total: 3.57 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.55 Total: 1.78 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.27 Total: -48.19 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.90 Total: -21.81 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.11 -9.05 -43.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852257697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.316 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds