Wall clock time and date at job start Tue Mar 31 2020 08:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99955 * 2 1 4 4 H 1.48504 * 109.46553 * 269.99854 * 3 2 1 5 5 H 1.48499 * 109.47033 * 29.99443 * 3 2 1 6 6 H 1.48500 * 109.47042 * 149.99909 * 3 2 1 7 7 C 1.37872 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00394 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99780 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.49590 * 59.99834 * 9 7 2 11 11 C 1.53039 * 109.49593 * 180.02562 * 9 7 2 12 12 C 1.53048 * 109.53763 * 181.35012 * 11 9 7 13 13 C 1.53193 * 109.30993 * 298.63632 * 12 11 9 14 14 N 1.46928 * 108.77828 * 54.62937 * 13 12 11 15 15 C 1.34774 * 120.62367 * 126.41213 * 14 13 12 16 16 O 1.21589 * 119.99629 * 174.96916 * 15 14 13 17 17 N 1.34771 * 120.00635 * 354.97132 * 15 14 13 18 18 O 1.41607 * 120.00417 * 185.06773 * 17 15 14 19 19 C 1.42898 * 114.00212 * 179.97438 * 18 17 15 20 20 C 1.53180 * 109.54198 * 274.82276 * 19 18 17 21 21 C 1.53098 * 109.15566 * 183.24207 * 20 19 18 22 22 O 1.42903 * 109.49084 * 57.47101 * 21 20 19 23 23 C 1.42903 * 114.09718 * 298.89073 * 22 21 20 24 24 C 1.53096 * 109.41646 * 61.15643 * 23 22 21 25 25 C 1.46995 * 118.75529 * 306.39664 * 14 13 12 26 26 H 0.97001 * 119.99628 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46270 * 301.37093 * 11 9 7 28 28 H 1.09001 * 109.46679 * 61.34430 * 11 9 7 29 29 H 1.09001 * 109.49495 * 58.58548 * 12 11 9 30 30 H 1.09000 * 109.49844 * 178.68106 * 12 11 9 31 31 H 1.08999 * 109.58860 * 174.42515 * 13 12 11 32 32 H 1.09004 * 109.58622 * 294.84579 * 13 12 11 33 33 H 0.97001 * 119.99538 * 5.06194 * 17 15 14 34 34 H 1.09000 * 109.53984 * 34.99349 * 19 18 17 35 35 H 1.09000 * 109.51745 * 303.05565 * 20 19 18 36 36 H 1.08993 * 109.52388 * 63.24103 * 20 19 18 37 37 H 1.09003 * 109.40857 * 297.49088 * 21 20 19 38 38 H 1.09005 * 109.49427 * 177.50539 * 21 20 19 39 39 H 1.08999 * 109.48186 * 301.17621 * 23 22 21 40 40 H 1.09000 * 109.48887 * 181.14061 * 23 22 21 41 41 H 1.08996 * 109.52370 * 182.48651 * 24 23 22 42 42 H 1.09005 * 109.57441 * 62.32636 * 24 23 22 43 43 H 1.08994 * 109.57890 * 293.82247 * 25 14 13 44 44 H 1.09000 * 109.62340 * 173.37479 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6246 -2.5575 -0.8895 11 6 2.2451 -3.6627 0.0018 12 6 1.4812 -4.9885 -0.0322 13 6 0.6044 -5.1001 1.2191 14 7 -0.2543 -3.9108 1.3026 15 6 -1.5907 -4.0360 1.4234 16 8 -2.2818 -3.0485 1.5835 17 7 -2.1612 -5.2557 1.3669 18 8 -3.5718 -5.3792 1.3860 19 6 -4.0380 -6.7284 1.3199 20 6 -4.1169 -7.1721 -0.1441 21 6 -4.6935 -8.5889 -0.2092 22 8 -5.9769 -8.6107 0.4188 23 6 -5.9560 -8.2512 1.8017 24 6 -5.4323 -6.8200 1.9476 25 6 0.3717 -2.5818 1.2521 26 1 -0.4849 0.8401 -0.0004 27 1 2.8885 -3.5918 -0.8752 28 1 2.8551 -3.6184 0.9041 29 1 0.8520 -5.0231 -0.9216 30 1 2.1899 -5.8163 -0.0549 31 1 -0.0153 -5.9944 1.1524 32 1 1.2371 -5.1568 2.1048 33 1 -1.6056 -6.0490 1.3131 34 1 -3.3509 -7.3785 1.8614 35 1 -4.7641 -6.4911 -0.6967 36 1 -3.1187 -7.1631 -0.5817 37 1 -4.0241 -9.2765 0.3078 38 1 -4.7934 -8.8934 -1.2511 39 1 -5.3031 -8.9342 2.3450 40 1 -6.9654 -8.3121 2.2086 41 1 -5.3739 -6.5594 3.0043 42 1 -6.1066 -6.1308 1.4391 43 1 0.9855 -2.4332 2.1405 44 1 -0.4012 -1.8146 1.2069 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852257697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:48 Heat of formation + Delta-G solvation = -91.716738 kcal Electronic energy + Delta-G solvation = -25114.939793 eV Core-core repulsion = 21454.613255 eV Total energy + Delta-G solvation = -3660.326538 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28492 -40.48027 -38.68857 -37.86379 -35.44561 -34.27877 -33.46614 -32.18880 -31.99372 -31.20333 -27.01863 -26.13384 -25.35917 -24.63237 -23.45729 -22.13142 -21.53492 -20.39195 -19.64428 -18.77760 -18.07788 -17.36010 -17.08275 -16.76300 -16.50410 -16.29698 -15.83883 -15.66518 -15.28105 -15.21261 -14.72955 -14.67357 -14.47245 -14.22824 -14.06175 -13.60774 -13.53930 -13.24968 -12.87450 -12.70742 -12.37814 -12.33307 -12.25787 -12.21265 -11.88742 -11.68139 -11.62726 -11.43820 -11.27425 -10.96462 -10.85156 -10.70682 -10.50228 -10.05883 -9.32455 -8.08738 -6.26216 0.60132 1.42272 1.43401 1.54072 2.16039 2.42580 2.60414 2.90373 3.20124 3.36127 3.60140 3.63221 3.89164 3.89616 3.99570 4.15149 4.21406 4.28271 4.42470 4.45459 4.60448 4.61855 4.68829 4.71532 4.76957 4.80623 4.83472 4.98473 5.02059 5.09454 5.12835 5.23415 5.28663 5.31770 5.55860 5.59183 5.70268 5.92528 6.00823 6.11151 6.19482 6.36161 6.87080 6.97963 7.44208 7.63101 8.94430 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.027028 B = 0.003252 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.702943 B = 8608.606539 C = 9157.354038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.038 3.962 10 H -0.014 1.014 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.107 3.893 14 N -0.615 5.615 15 C 0.710 3.290 16 O -0.631 6.631 17 N -0.600 5.600 18 O -0.155 6.155 19 C 0.053 3.947 20 C -0.179 4.179 21 C 0.067 3.933 22 O -0.402 6.402 23 C 0.070 3.930 24 C -0.147 4.147 25 C 0.145 3.855 26 H 0.259 0.741 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.418 0.582 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 -23.326 3.550 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.572 4.572 8 H 0.083 0.917 9 C 0.018 3.982 10 H 0.004 0.996 11 C -0.143 4.143 12 C -0.164 4.164 13 C -0.015 4.015 14 N -0.355 5.355 15 C 0.412 3.588 16 O -0.511 6.511 17 N -0.310 5.310 18 O -0.158 6.158 19 C -0.005 4.005 20 C -0.217 4.217 21 C -0.010 4.010 22 O -0.321 6.321 23 C -0.007 4.007 24 C -0.186 4.186 25 C 0.022 3.978 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.264 0.736 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.095 0.905 40 H 0.135 0.865 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.117 -22.418 3.571 23.271 hybrid contribution 0.458 1.233 -0.161 1.325 sum -4.660 -21.185 3.410 21.958 Atomic orbital electron populations 1.70107 1.07520 1.27229 1.50634 1.25928 0.95502 1.03055 0.94672 0.85558 0.78825 0.79108 0.78189 1.20185 1.21592 1.18363 1.21532 0.93377 0.91374 1.50955 0.91667 1.18939 0.93106 0.93997 0.92136 0.99607 1.21509 0.97587 0.93977 1.01187 1.21926 0.99024 0.98428 0.97029 1.21982 0.93633 0.85974 0.99886 1.47633 1.02478 1.09583 1.75810 1.15644 0.82652 0.82115 0.78404 1.90898 1.62921 1.38726 1.58527 1.46098 0.95134 1.07104 1.82626 1.90637 1.00569 1.27722 1.96902 1.22966 0.97387 0.83070 0.97093 1.22784 1.03112 0.99323 0.96507 1.22671 0.84586 0.93852 0.99855 1.87938 1.30571 1.88975 1.24642 1.22712 1.03723 0.91921 0.82327 1.22306 0.93611 1.00182 1.02526 1.21705 0.96687 0.81215 0.98158 0.93229 0.92835 0.92078 0.93113 0.87281 0.88375 0.89344 0.73585 0.87861 0.92347 0.89670 0.90492 0.87347 0.90494 0.86516 0.88934 0.91697 0.94027 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.84 11.40 21.45 0.24 -56.59 16 2 C 0.01 0.44 5.30 84.65 0.45 0.89 16 3 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.53 -29.25 8.56 25.60 0.22 -29.03 16 8 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.04 1.88 2.25 -11.46 -0.03 1.86 16 10 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 11 C -0.10 -3.86 5.11 30.62 0.16 -3.70 16 12 C -0.13 -3.39 6.08 30.67 0.19 -3.21 16 13 C 0.11 2.78 6.43 86.36 0.56 3.34 16 14 N -0.62 -24.74 2.97 -836.75 -2.49 -27.23 16 15 C 0.71 31.14 8.44 179.06 1.51 32.66 16 16 O -0.63 -35.99 16.19 13.30 0.22 -35.78 16 17 N -0.60 -19.01 6.29 -184.75 -1.16 -20.17 16 18 O -0.15 -5.05 10.76 -21.51 -0.23 -5.28 16 19 C 0.05 1.06 2.83 30.71 0.09 1.15 16 20 C -0.18 -3.31 5.80 30.69 0.18 -3.13 16 21 C 0.07 0.90 6.84 72.02 0.49 1.39 16 22 O -0.40 -6.94 10.77 -148.98 -1.60 -8.55 16 23 C 0.07 0.88 6.84 72.01 0.49 1.38 16 24 C -0.15 -2.61 5.79 30.69 0.18 -2.43 16 25 C 0.14 7.27 5.39 86.35 0.47 7.74 16 26 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 27 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.10 1.71 5.57 -2.39 -0.01 1.70 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.42 8.95 5.89 -92.71 -0.55 8.41 16 34 H 0.10 1.46 7.95 -2.39 -0.02 1.44 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.07 4.49 5.16 -2.39 -0.01 4.48 16 Total: -1.00 -81.79 347.64 2.39 -79.39 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.45 Total: 18.70 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 4.95 Total: 8.90 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -3.41 Total: -103.99 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -1.62 Total: -49.60 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -81.79 2.39 -79.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852257697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.323 kcal (2) G-P(sol) polarization free energy of solvation -81.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds