Wall clock time and date at job start Tue Mar 31 2020 08:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99886 * 2 1 4 4 H 1.48503 * 109.47036 * 239.99840 * 3 2 1 5 5 H 1.48499 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46970 * 119.99831 * 3 2 1 7 7 C 1.37877 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99722 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99881 * 359.72213 * 7 2 1 10 10 H 1.08998 * 109.49849 * 300.34290 * 9 7 2 11 11 C 1.53037 * 109.49754 * 180.27878 * 9 7 2 12 12 C 1.53041 * 109.53764 * 178.68537 * 11 9 7 13 13 C 1.53196 * 109.31336 * 61.36301 * 12 11 9 14 14 N 1.46928 * 108.77627 * 305.36421 * 13 12 11 15 15 C 1.34776 * 120.63160 * 233.58792 * 14 13 12 16 16 O 1.21581 * 119.99772 * 174.77202 * 15 14 13 17 17 N 1.34776 * 119.99912 * 354.77436 * 15 14 13 18 18 O 1.41596 * 120.00113 * 184.97803 * 17 15 14 19 19 C 1.42902 * 114.00573 * 179.97438 * 18 17 15 20 20 C 1.53174 * 109.54040 * 274.55635 * 19 18 17 21 21 C 1.53099 * 109.15973 * 183.14752 * 20 19 18 22 22 O 1.42903 * 109.41449 * 57.60838 * 21 20 19 23 23 C 1.42902 * 114.09819 * 298.84450 * 22 21 20 24 24 C 1.53096 * 109.41721 * 61.15454 * 23 22 21 25 25 C 1.46923 * 118.73377 * 53.60691 * 14 13 12 26 26 H 0.96996 * 119.99814 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46184 * 298.70422 * 11 9 7 28 28 H 1.08997 * 109.46344 * 58.66124 * 11 9 7 29 29 H 1.09002 * 109.50168 * 181.31395 * 12 11 9 30 30 H 1.09001 * 109.49656 * 301.37938 * 12 11 9 31 31 H 1.08997 * 109.58576 * 65.15505 * 13 12 11 32 32 H 1.09005 * 109.58373 * 185.43620 * 13 12 11 33 33 H 0.97003 * 120.00491 * 4.98104 * 17 15 14 34 34 H 1.09003 * 109.53456 * 34.82110 * 19 18 17 35 35 H 1.08997 * 109.52510 * 303.05305 * 20 19 18 36 36 H 1.09002 * 109.52353 * 63.24572 * 20 19 18 37 37 H 1.09001 * 109.47985 * 297.62590 * 21 20 19 38 38 H 1.08998 * 109.47693 * 177.58976 * 21 20 19 39 39 H 1.08998 * 109.47602 * 301.17319 * 23 22 21 40 40 H 1.09000 * 109.48745 * 181.14398 * 23 22 21 41 41 H 1.08997 * 109.51949 * 182.48536 * 24 23 22 42 42 H 1.08997 * 109.51810 * 62.29581 * 24 23 22 43 43 H 1.09001 * 109.58414 * 186.60365 * 25 14 13 44 44 H 1.09001 * 109.58881 * 66.18511 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 0.0052 10 1 0.6235 -2.5529 0.8947 11 6 2.2452 -3.6627 0.0104 12 6 1.4812 -4.9882 0.0493 13 6 0.6059 -5.1055 -1.2025 14 7 -0.2527 -3.9166 -1.2923 15 6 -1.5890 -4.0423 -1.4142 16 8 -2.2971 -3.0542 -1.3919 17 7 -2.1404 -5.2634 -1.5608 18 8 -3.5314 -5.3887 -1.7943 19 6 -3.9787 -6.7390 -1.9304 20 6 -3.7994 -7.1943 -3.3819 21 6 -4.3533 -8.6134 -3.5354 22 8 -5.7276 -8.6318 -3.1442 23 6 -5.9516 -8.2605 -1.7825 24 6 -5.4619 -6.8274 -1.5585 25 6 0.3733 -2.5882 -1.2470 26 1 -0.4850 0.8400 -0.0004 27 1 2.8564 -3.6222 -0.8912 28 1 2.8875 -3.5878 0.8878 29 1 2.1899 -5.8160 0.0765 30 1 0.8514 -5.0192 0.9384 31 1 1.2398 -5.1662 -2.0872 32 1 -0.0120 -6.0008 -1.1337 33 1 -1.5845 -6.0564 -1.5062 34 1 -3.3982 -7.3836 -1.2703 35 1 -4.3397 -6.5187 -4.0450 36 1 -2.7399 -7.1873 -3.6377 37 1 -3.7859 -9.2955 -2.9023 38 1 -4.2674 -8.9264 -4.5759 39 1 -5.4052 -8.9381 -1.1265 40 1 -7.0171 -8.3196 -1.5601 41 1 -5.5914 -6.5579 -0.5103 42 1 -6.0358 -6.1444 -2.1848 43 1 -0.4000 -1.8211 -1.2065 44 1 0.9881 -2.4435 -2.1354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852257698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:52 Heat of formation + Delta-G solvation = -68.510869 kcal Electronic energy + Delta-G solvation = -25052.838458 eV Core-core repulsion = 21393.518202 eV Total energy + Delta-G solvation = -3659.320256 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.96163 -39.43840 -37.40029 -36.36415 -33.64363 -33.01112 -31.89979 -31.52035 -30.59503 -29.54753 -25.10882 -24.86552 -24.24437 -23.90800 -21.86196 -20.94073 -20.27038 -18.90838 -18.31600 -17.19612 -16.55889 -16.41128 -16.13868 -15.38374 -15.17816 -14.97307 -14.47988 -14.40604 -14.03229 -13.78167 -13.61555 -13.46805 -12.93088 -12.77003 -12.59879 -12.51437 -12.12663 -11.94792 -11.70325 -11.49892 -11.00432 -10.95777 -10.87444 -10.62815 -10.52806 -10.44364 -10.22812 -10.06766 -9.88847 -9.45299 -9.10187 -8.96697 -8.62128 -8.40752 -7.70860 -5.96235 -4.06080 1.93122 3.34104 3.40308 3.41332 3.48248 3.81113 4.02357 4.29830 4.37116 4.40922 4.45988 4.57057 4.65865 4.81222 5.03577 5.12343 5.22239 5.28905 5.31983 5.33444 5.43035 5.43566 5.55694 5.62139 5.77288 5.86482 5.91152 6.10526 6.27957 6.48707 6.61864 6.74073 6.78342 6.94655 6.97871 7.13621 7.30324 7.43104 7.73129 7.92051 8.05742 8.41174 8.47292 8.97433 9.23603 9.59535 11.08630 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.028962 B = 0.003166 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.565812 B = 8840.478128 C = 9445.037227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.115 3.885 14 N -0.614 5.614 15 C 0.715 3.285 16 O -0.561 6.561 17 N -0.624 5.624 18 O -0.123 6.123 19 C 0.062 3.938 20 C -0.181 4.181 21 C 0.064 3.936 22 O -0.382 6.382 23 C 0.067 3.933 24 C -0.149 4.149 25 C 0.131 3.869 26 H 0.265 0.735 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.396 0.604 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.124 0.876 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.724 -19.942 -4.325 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.355 5.355 15 C 0.417 3.583 16 O -0.435 6.435 17 N -0.334 5.334 18 O -0.125 6.125 19 C 0.003 3.997 20 C -0.219 4.219 21 C -0.013 4.013 22 O -0.301 6.301 23 C -0.010 4.010 24 C -0.188 4.188 25 C 0.011 3.989 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.142 0.858 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.727 -18.925 -4.476 20.578 hybrid contribution 1.007 0.255 0.203 1.058 sum -5.720 -18.670 -4.273 19.989 Atomic orbital electron populations 1.69887 1.05689 1.27021 1.48824 1.25070 0.94878 0.99255 0.94835 0.86656 0.79557 0.83233 0.78527 1.20257 1.21259 1.20325 1.21018 0.92833 0.90072 1.52288 0.92387 1.18990 0.92589 0.92224 0.94169 0.95191 1.21616 0.98545 0.93944 1.00643 1.21958 0.98621 0.99321 0.97330 1.21532 0.93427 0.87022 0.98963 1.47750 1.02213 1.09186 1.76359 1.15465 0.82622 0.81571 0.78632 1.90959 1.59842 1.35959 1.56750 1.46679 0.96589 1.07982 1.82140 1.90612 1.04077 1.23712 1.94100 1.22556 0.96174 0.84976 0.96031 1.22802 1.02853 0.98373 0.97851 1.22572 0.82429 0.95030 1.01221 1.87953 1.25436 1.88749 1.27926 1.22583 1.01997 0.93144 0.83286 1.22255 0.93654 0.98957 1.03908 1.22293 0.98251 0.79934 0.98433 0.92516 0.93098 0.92948 0.92205 0.92081 0.91775 0.92639 0.76254 0.90855 0.89685 0.90345 0.93007 0.88348 0.92848 0.87923 0.89490 0.89527 0.85796 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 11.41 55.43 0.63 -25.20 16 2 C 0.06 1.75 5.31 -17.82 -0.09 1.65 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.10 8.56 -34.44 -0.29 -14.39 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 0.97 2.25 -91.66 -0.21 0.76 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.11 -2.12 5.11 -26.69 -0.14 -2.26 16 12 C -0.13 -2.06 6.08 -26.61 -0.16 -2.22 16 13 C 0.11 1.70 6.38 -3.71 -0.02 1.67 16 14 N -0.61 -12.39 2.97 -178.50 -0.53 -12.92 16 15 C 0.72 15.39 8.44 -86.92 -0.73 14.66 16 16 O -0.56 -15.17 16.17 -12.79 -0.21 -15.37 16 17 N -0.62 -10.19 6.28 27.63 0.17 -10.02 16 18 O -0.12 -1.99 10.76 -29.55 -0.32 -2.31 16 19 C 0.06 0.67 2.83 -26.55 -0.08 0.59 16 20 C -0.18 -1.70 5.79 -26.59 -0.15 -1.86 16 21 C 0.06 0.50 6.84 37.21 0.25 0.75 16 22 O -0.38 -3.64 10.77 -35.23 -0.38 -4.02 16 23 C 0.07 0.51 6.84 37.21 0.25 0.76 16 24 C -0.15 -1.41 5.79 -26.59 -0.15 -1.56 16 25 C 0.13 3.17 5.41 -3.71 -0.02 3.15 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.63 5.66 -51.93 -0.29 0.33 16 33 H 0.40 4.86 5.92 -40.82 -0.24 4.62 16 34 H 0.07 0.66 7.94 -51.93 -0.41 0.25 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.12 3.57 5.13 -51.93 -0.27 3.30 16 44 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -34.14 347.69 -9.05 -43.19 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.10 Total: 3.43 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.54 Total: 1.72 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.28 Total: -48.14 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.90 Total: -21.70 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.14 -9.05 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852257698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.316 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds