Wall clock time and date at job start Tue Mar 31 2020 07:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.46815 * 2 1 4 4 C 1.34236 * 117.00156 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99512 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00189 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.46984 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47398 * 54.99888 * 7 6 4 9 9 C 1.50699 * 109.47083 * 174.99834 * 7 6 4 10 10 H 1.07996 * 120.00370 * 239.99526 * 9 7 6 11 11 C 1.37882 * 119.99790 * 59.99908 * 9 7 6 12 12 N 1.31508 * 120.00257 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99910 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47104 * 89.99584 * 13 11 9 15 15 H 1.48500 * 109.47256 * 209.99881 * 13 11 9 16 16 H 1.48506 * 109.46930 * 329.99722 * 13 11 9 17 17 O 1.45198 * 109.46884 * 294.99550 * 7 6 4 18 18 C 1.34230 * 116.99957 * 150.00116 * 17 7 6 19 19 O 1.20827 * 120.00039 * 359.97438 * 18 17 7 20 20 C 1.50704 * 120.00315 * 180.02562 * 18 17 7 21 21 C 1.52994 * 109.47182 * 180.02562 * 20 18 17 22 22 H 1.09002 * 109.47356 * 55.00121 * 21 20 18 23 23 C 1.53002 * 109.47149 * 294.99769 * 21 20 18 24 24 C 1.53003 * 109.46882 * 175.00145 * 21 20 18 25 25 C 1.53005 * 117.49818 * 248.61958 * 24 21 20 26 26 C 1.52996 * 60.00164 * 252.51327 * 25 24 21 27 27 H 1.09001 * 109.47347 * 60.00369 * 1 2 3 28 28 H 1.09002 * 109.46807 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47324 * 299.99705 * 1 2 3 30 30 H 1.08997 * 109.47324 * 240.00295 * 2 1 3 31 31 H 1.09001 * 109.47347 * 119.99631 * 2 1 3 32 32 H 1.08990 * 109.47311 * 60.00248 * 6 4 3 33 33 H 1.09001 * 109.47069 * 300.00013 * 6 4 3 34 34 H 0.97002 * 120.00075 * 180.02562 * 12 11 9 35 35 H 1.08998 * 109.46886 * 300.00519 * 20 18 17 36 36 H 1.09003 * 109.47151 * 59.99758 * 20 18 17 37 37 H 1.09001 * 109.47150 * 299.99862 * 23 21 20 38 38 H 1.09001 * 109.46724 * 60.00514 * 23 21 20 39 39 H 1.09005 * 109.46882 * 180.02562 * 23 21 20 40 40 H 1.08999 * 115.55488 * 34.32900 * 24 21 20 41 41 H 1.09009 * 117.49669 * 0.02562 * 25 24 21 42 42 H 1.08999 * 117.50127 * 145.02040 * 25 24 21 43 43 H 1.09002 * 117.49518 * 252.51319 * 26 25 24 44 44 H 1.08995 * 117.49958 * 107.49313 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4485 2.8575 0.0010 8 1 5.7805 2.2502 -0.8411 9 6 6.0242 4.2448 -0.1222 10 1 6.6589 4.4936 -0.9598 11 6 5.7405 5.1964 0.8344 12 7 4.9672 4.8936 1.8541 13 14 6.4535 6.9162 0.6813 14 1 5.5184 7.7727 -0.0914 15 1 6.6492 7.4933 2.0355 16 1 7.7598 6.8496 -0.0220 17 8 5.9016 2.2540 1.2415 18 6 7.0462 1.5543 1.1963 19 8 7.6493 1.4492 0.1546 20 6 7.5785 0.8988 2.4445 21 6 8.8851 0.1715 2.1211 22 1 9.5863 0.8699 1.6642 23 6 8.6029 -0.9766 1.1499 24 6 9.4899 -0.3881 3.4103 25 6 10.7887 0.2446 3.9141 26 6 10.8089 -1.1552 3.2970 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5844 3.4694 0.8911 33 1 3.5849 3.4699 -0.8888 34 1 4.7673 5.5632 2.5269 35 1 7.7644 1.6590 3.2031 36 1 6.8469 0.1829 2.8192 37 1 7.9019 -1.6750 1.6068 38 1 8.1721 -0.5778 0.2314 39 1 9.5338 -1.4950 0.9198 40 1 8.7725 -0.7281 4.1572 41 1 11.2120 1.0599 3.3273 42 1 10.9259 0.3212 4.9927 43 1 10.9593 -1.9996 3.9696 44 1 11.2458 -1.2612 2.3041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870620607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:02 Heat of formation + Delta-G solvation = -171.673630 kcal Electronic energy + Delta-G solvation = -25080.075364 eV Core-core repulsion = 21383.988884 eV Total energy + Delta-G solvation = -3696.086480 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.166 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.83002 -39.19864 -37.75540 -36.18150 -35.23911 -33.04102 -32.76004 -31.58812 -30.28195 -27.62090 -26.21417 -23.79640 -23.18595 -22.19533 -21.82123 -20.22038 -19.66889 -19.23861 -17.21956 -16.78595 -16.23967 -16.03720 -15.59752 -15.39190 -15.10194 -14.78198 -14.55250 -13.89796 -13.82492 -13.38934 -12.90977 -12.78499 -12.75626 -12.40277 -12.09150 -11.92686 -11.55906 -11.51470 -11.45035 -11.24615 -11.10126 -11.01651 -10.89054 -10.81710 -10.66143 -10.49367 -10.17306 -10.14952 -10.13609 -9.75573 -9.69220 -9.40879 -9.08677 -8.74039 -8.67699 -6.23582 -4.40583 3.01770 3.18690 3.27584 3.30676 3.34843 3.55838 3.85369 4.07010 4.27044 4.83299 4.98940 5.02903 5.08615 5.10252 5.15685 5.26656 5.38886 5.48124 5.57738 5.66603 5.68430 5.75030 5.89618 5.91520 5.96701 6.04641 6.06926 6.09421 6.15991 6.18795 6.25274 6.36203 6.42262 6.63600 6.67281 6.77330 6.96277 7.04511 7.30673 7.69371 7.97776 8.11006 8.51671 8.68107 9.21132 9.37520 10.78853 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.009312 B = 0.005583 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.307547 B = 5013.745351 C = 7458.794847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.517 6.517 6 C -0.102 4.102 7 C 0.231 3.769 8 H 0.045 0.955 9 C -0.546 4.546 10 H 0.069 0.931 11 C 0.081 3.919 12 N -0.861 5.861 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.271 1.271 17 O -0.333 6.333 18 C 0.464 3.536 19 O -0.531 6.531 20 C -0.109 4.109 21 C -0.046 4.046 22 H 0.078 0.922 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.182 4.182 26 C -0.180 4.180 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.140 0.860 33 H 0.102 0.898 34 H 0.267 0.733 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 -8.860 2.865 9.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.302 3.698 5 O -0.404 6.404 6 C -0.140 4.140 7 C 0.178 3.822 8 H 0.063 0.937 9 C -0.583 4.583 10 H 0.087 0.913 11 C -0.126 4.126 12 N -0.497 5.497 13 Si 0.723 3.277 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.196 1.196 17 O -0.247 6.247 18 C 0.308 3.692 19 O -0.423 6.423 20 C -0.147 4.147 21 C -0.065 4.065 22 H 0.096 0.904 23 C -0.206 4.206 24 C -0.162 4.162 25 C -0.219 4.219 26 C -0.217 4.217 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.158 0.842 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.648 -9.108 2.709 9.524 hybrid contribution 0.351 0.780 0.066 0.858 sum -0.297 -8.327 2.775 8.783 Atomic orbital electron populations 1.21777 0.93304 1.02310 1.03331 1.22852 0.94848 0.81833 1.02015 1.86582 1.26163 1.30948 1.84736 1.24938 0.79446 0.94340 0.71080 1.90588 1.60235 1.43670 1.45944 1.21888 0.96880 0.88052 1.07174 1.19995 0.87890 0.92505 0.81766 0.93728 1.21373 1.32281 0.94404 1.10232 0.91305 1.25104 0.93892 0.99088 0.94467 1.69869 1.34486 1.34420 1.10911 0.86515 0.79911 0.83550 0.77680 1.20138 1.20873 1.19589 1.86579 1.36992 1.59642 1.41514 1.22989 0.80450 0.76006 0.89764 1.90479 1.58960 1.59743 1.33125 1.21330 0.97287 1.00299 0.95800 1.20493 0.95640 0.97061 0.93288 0.90374 1.21920 1.00901 0.97255 1.00510 1.22354 0.90603 1.03800 0.99487 1.23025 1.01811 0.96479 1.00611 1.22903 1.01524 0.94956 1.02300 0.91710 0.90859 0.91592 0.91890 0.91769 0.84222 0.87958 0.92303 0.88640 0.89049 0.93450 0.90359 0.93302 0.87859 0.88743 0.89115 0.89190 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.29 37.16 0.38 -1.24 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.79 10.22 -39.27 -0.40 -7.19 16 4 C 0.46 9.85 7.84 36.00 0.28 10.13 16 5 O -0.52 -12.18 15.17 -23.95 -0.36 -12.55 16 6 C -0.10 -2.34 5.23 -27.88 -0.15 -2.48 16 7 C 0.23 5.96 1.64 -27.88 -0.05 5.92 16 8 H 0.04 1.21 6.97 -51.93 -0.36 0.85 16 9 C -0.55 -14.73 8.92 -34.44 -0.31 -15.04 16 10 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 11 C 0.08 2.12 5.25 -17.82 -0.09 2.02 16 12 N -0.86 -22.68 10.93 55.43 0.61 -22.07 16 13 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 17 O -0.33 -8.57 8.53 -44.46 -0.38 -8.95 16 18 C 0.46 10.94 7.64 36.01 0.28 11.21 16 19 O -0.53 -13.46 13.18 -18.75 -0.25 -13.71 16 20 C -0.11 -1.98 5.27 -27.88 -0.15 -2.12 16 21 C -0.05 -0.74 2.19 -90.62 -0.20 -0.94 16 22 H 0.08 1.36 7.71 -51.93 -0.40 0.96 16 23 C -0.15 -2.37 8.78 37.16 0.33 -2.05 16 24 C -0.14 -1.85 5.15 -90.61 -0.47 -2.32 16 25 C -0.18 -2.13 10.18 -26.73 -0.27 -2.40 16 26 C -0.18 -2.02 9.73 -26.73 -0.26 -2.28 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 31 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 32 H 0.14 3.39 6.22 -51.93 -0.32 3.07 16 33 H 0.10 2.13 8.14 -51.93 -0.42 1.71 16 34 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 35 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.50 5.95 -51.93 -0.31 1.19 16 39 H 0.05 0.68 7.29 -51.93 -0.38 0.30 16 40 H 0.10 1.24 8.11 -51.93 -0.42 0.82 16 41 H 0.09 1.14 8.05 -51.92 -0.42 0.72 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.06 7.61 -51.93 -0.40 0.66 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -30.33 366.76 -7.92 -38.25 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.20 Total: 5.96 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.44 Total: -0.49 kcal Atomic # 7 Polarization: -22.68 SS G_CDS: 0.61 Total: -22.07 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.39 Total: -42.40 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.33 -7.92 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870620607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.424 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds