Wall clock time and date at job start Tue Mar 31 2020 07:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47293 * 2 1 4 4 N 1.46899 * 109.47517 * 185.51867 * 3 2 1 5 5 C 1.46899 * 110.99901 * 296.46044 * 4 3 2 6 6 C 1.50702 * 109.47162 * 159.53054 * 5 4 3 7 7 H 1.08002 * 119.99823 * 4.77328 * 6 5 4 8 8 C 1.37879 * 119.99879 * 184.76711 * 6 5 4 9 9 N 1.31517 * 119.99448 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00303 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.46625 * 89.99874 * 10 8 6 12 12 H 1.48495 * 109.47276 * 209.99865 * 10 8 6 13 13 H 1.48501 * 109.47069 * 330.00169 * 10 8 6 14 14 C 1.46899 * 111.00156 * 172.50992 * 4 3 2 15 15 C 1.50701 * 109.46621 * 293.95172 * 14 4 3 16 16 C 1.38468 * 126.22284 * 259.68500 * 15 14 4 17 17 N 1.31504 * 109.05551 * 179.85814 * 16 15 14 18 18 N 1.40117 * 108.96804 * 0.41490 * 17 16 15 19 19 C 1.36771 * 132.15808 * 179.71871 * 18 17 16 20 20 C 1.34479 * 121.01766 * 180.02562 * 19 18 17 21 21 C 1.41851 * 120.25901 * 0.02562 * 20 19 18 22 22 C 1.43201 * 120.43494 * 180.02562 * 21 20 19 23 23 N 6.21130 * 54.16187 * 357.11100 * 2 1 3 24 24 C 1.38620 * 119.12983 * 359.97438 * 21 20 19 25 25 C 1.37265 * 107.37349 * 359.74168 * 18 17 16 26 26 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47353 * 300.00075 * 1 2 3 28 28 H 1.08998 * 109.47166 * 60.00247 * 1 2 3 29 29 H 1.08998 * 109.47353 * 239.99925 * 2 1 3 30 30 H 1.09008 * 109.47064 * 119.99673 * 2 1 3 31 31 H 1.09004 * 109.46912 * 65.51629 * 3 2 1 32 32 H 1.09004 * 109.47152 * 305.52313 * 3 2 1 33 33 H 1.08994 * 109.47464 * 279.53343 * 5 4 3 34 34 H 1.09001 * 109.47348 * 39.53482 * 5 4 3 35 35 H 0.97005 * 119.99560 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.46858 * 173.95924 * 14 4 3 37 37 H 1.08995 * 109.47520 * 53.95006 * 14 4 3 38 38 H 1.07998 * 125.47291 * 0.03503 * 16 15 14 39 39 H 1.07998 * 119.48891 * 0.02634 * 19 18 17 40 40 H 1.08001 * 119.87354 * 179.97438 * 20 19 18 41 41 H 1.07995 * 120.50840 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5029 1.4446 -0.1332 5 6 4.1376 0.7953 1.0216 6 6 5.5331 0.3637 0.6509 7 1 5.9387 0.6206 -0.3165 8 6 6.2921 -0.3589 1.5469 9 7 7.5101 -0.7351 1.2235 10 14 5.5904 -0.8037 3.2200 11 1 4.8956 -2.1133 3.1330 12 1 6.6925 -0.8928 4.2112 13 1 4.6251 0.2415 3.6456 14 6 4.0129 2.8101 -0.3153 15 6 3.5319 3.3540 -1.6358 16 6 4.2643 3.4202 -2.8091 17 7 3.5169 3.9504 -3.7524 18 7 2.2597 4.2603 -3.2170 19 6 1.1411 4.8230 -3.7672 20 6 0.0329 5.0231 -3.0321 21 6 0.0062 4.6513 -1.6634 22 6 -1.1720 4.8621 -0.8773 23 7 -2.1068 5.0289 -0.2538 24 6 1.1353 4.0803 -1.0972 25 6 2.2731 3.8866 -1.8963 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7595 1.9269 0.9353 32 1 1.5981 1.9841 -0.8364 33 1 4.1835 1.4978 1.8536 34 1 3.5533 -0.0771 1.3144 35 1 8.0440 -1.2438 1.8538 36 1 5.1027 2.7954 -0.3037 37 1 3.6494 3.4446 0.4930 38 1 5.2843 3.0871 -2.9308 39 1 1.1479 5.1111 -4.8080 40 1 -0.8400 5.4694 -3.4853 41 1 1.1397 3.7892 -0.0572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249106607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:45 Heat of formation + Delta-G solvation = 144.674980 kcal Electronic energy + Delta-G solvation = -23708.864304 eV Core-core repulsion = 20398.390151 eV Total energy + Delta-G solvation = -3310.474153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.14547 -38.11328 -37.43253 -36.28795 -33.45610 -33.09606 -32.12330 -31.02930 -29.68967 -27.71525 -26.26403 -24.62960 -23.84070 -22.89190 -21.58092 -21.03219 -19.59401 -18.73228 -17.48809 -16.95811 -16.68670 -15.86654 -15.08673 -14.94591 -14.80830 -14.49500 -14.24986 -14.03319 -13.93498 -13.64989 -13.43365 -13.24398 -12.83748 -12.58410 -12.43987 -12.29013 -11.95633 -11.76337 -11.62806 -11.52592 -11.11525 -10.85762 -10.71697 -10.48360 -10.41751 -10.38693 -10.00647 -9.84177 -9.41318 -9.29752 -8.55394 -7.64370 -7.34533 -6.05036 -4.01369 0.10345 0.82120 2.12808 2.31603 2.45367 2.77035 3.27474 3.35518 3.36795 3.36969 3.41309 4.08834 4.41707 4.46309 4.50766 4.70382 4.80052 5.02637 5.26171 5.26747 5.31740 5.35725 5.38722 5.43624 5.64449 5.67239 5.74394 5.84222 5.93578 5.99442 6.08519 6.22038 6.22222 6.36876 6.53788 6.61427 6.68647 6.73212 6.84817 6.90137 7.12857 7.49331 7.62557 7.89446 8.00515 8.66054 9.05029 9.57392 11.08185 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.004584 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.594084 B = 6106.889701 C = 7212.151062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.046 3.954 4 N -0.520 5.520 5 C 0.159 3.841 6 C -0.504 4.504 7 H 0.082 0.918 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.870 3.130 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.133 3.867 15 C -0.185 4.185 16 C 0.096 3.904 17 N -0.306 5.306 18 N -0.278 5.278 19 C 0.123 3.877 20 C -0.143 4.143 21 C -0.010 4.010 22 C 0.259 3.741 23 N -0.407 5.407 24 C -0.029 4.029 25 C 0.081 3.919 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.018 0.982 32 H 0.068 0.932 33 H -0.012 1.012 34 H 0.030 0.970 35 H 0.263 0.737 36 H 0.101 0.899 37 H 0.030 0.970 38 H 0.199 0.801 39 H 0.173 0.827 40 H 0.159 0.841 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.747 10.917 -7.972 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.082 4.082 4 N -0.244 5.244 5 C 0.033 3.967 6 C -0.543 4.543 7 H 0.100 0.900 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.194 1.194 14 C 0.005 3.995 15 C -0.197 4.197 16 C -0.081 4.081 17 N -0.130 5.130 18 N -0.047 5.047 19 C -0.001 4.001 20 C -0.167 4.167 21 C -0.018 4.018 22 C -0.057 4.057 23 N -0.083 5.083 24 C -0.053 4.053 25 C -0.036 4.036 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.006 0.994 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.048 0.952 38 H 0.216 0.784 39 H 0.190 0.810 40 H 0.176 0.824 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.816 11.130 -8.643 20.447 hybrid contribution -0.105 -0.281 2.219 2.239 sum -14.921 10.849 -6.424 19.534 Atomic orbital electron populations 1.21744 0.96573 1.01261 1.01039 1.21566 0.94158 0.97113 1.03240 1.22402 0.90412 0.96879 0.98550 1.62020 1.02597 1.15970 1.43794 1.20269 0.95889 0.93581 0.86987 1.21027 0.96064 1.33952 1.03231 0.90032 1.24877 0.94783 0.95636 0.97935 1.69889 1.09338 1.38690 1.36016 0.86942 0.79011 0.79353 0.84924 1.20210 1.21251 1.19352 1.20346 1.01524 0.88381 0.89277 1.20306 0.91661 1.08842 0.98851 1.23874 1.00250 0.94375 0.89564 1.77921 0.88040 1.25838 1.21153 1.46328 1.10589 1.39822 1.07962 1.21217 0.82942 0.95950 0.99990 1.20498 0.98661 1.05423 0.92104 1.15914 0.88952 1.04297 0.92647 1.25342 0.92851 0.93983 0.93475 1.81280 1.10496 1.08240 1.08258 1.21089 0.89084 0.94621 1.00504 1.19073 0.96281 1.02880 0.85397 0.92878 0.93315 0.93247 0.90960 0.91660 0.96430 0.91429 0.99400 0.95245 0.92721 0.88086 0.95248 0.78395 0.80964 0.82382 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.15 0.37 -1.51 16 2 C -0.12 -1.94 5.72 -26.74 -0.15 -2.09 16 3 C 0.05 0.74 3.72 -3.83 -0.01 0.72 16 4 N -0.52 -9.98 4.43 -237.52 -1.05 -11.03 16 5 C 0.16 3.60 3.69 -4.98 -0.02 3.58 16 6 C -0.50 -13.57 9.19 -34.44 -0.32 -13.88 16 7 H 0.08 2.38 7.95 -52.49 -0.42 1.96 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 10 Si 0.87 20.88 27.38 -169.99 -4.65 16.23 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.21 6.68 56.52 0.38 -5.83 16 14 C 0.13 2.26 5.27 -4.98 -0.03 2.23 16 15 C -0.18 -2.73 5.33 -104.20 -0.56 -3.28 16 16 C 0.10 1.36 11.87 -17.61 -0.21 1.15 16 17 N -0.31 -4.27 12.66 30.45 0.39 -3.89 16 18 N -0.28 -3.38 3.90 -10.78 -0.04 -3.42 16 19 C 0.12 1.01 11.16 -16.68 -0.19 0.83 16 20 C -0.14 -1.00 9.71 -39.53 -0.38 -1.39 16 21 C -0.01 -0.09 5.77 -106.45 -0.61 -0.70 16 22 C 0.26 2.67 15.37 -22.47 -0.35 2.33 16 23 N -0.41 -5.08 18.54 41.84 0.78 -4.30 16 24 C -0.03 -0.32 7.84 -38.63 -0.30 -0.62 16 25 C 0.08 1.05 5.76 -84.29 -0.49 0.56 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.12 6.39 -51.92 -0.33 0.79 16 31 H 0.02 0.27 7.81 -51.93 -0.41 -0.13 16 32 H 0.07 0.99 4.11 -51.93 -0.21 0.77 16 33 H -0.01 -0.27 7.38 -51.93 -0.38 -0.65 16 34 H 0.03 0.68 4.98 -51.93 -0.26 0.42 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.10 1.86 7.39 -51.93 -0.38 1.48 16 37 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 38 H 0.20 2.47 8.06 -52.49 -0.42 2.04 16 39 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.16 1.62 6.70 -52.49 -0.35 1.27 16 LS Contribution 343.40 15.07 5.17 5.17 Total: -1.00 -31.69 343.40 -7.26 -38.95 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.28 Total: -1.47 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -3.34 Total: -10.25 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.84 Total: -48.64 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.65 Total: 16.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.69 -7.26 -38.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249106607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.627 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds