Wall clock time and date at job start Tue Mar 31 2020 09:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47596 * 2 1 4 4 N 1.46900 * 109.47308 * 120.00065 * 2 1 3 5 5 C 1.46908 * 110.99753 * 275.00097 * 4 2 1 6 6 C 1.52999 * 109.46978 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47321 * 299.99963 * 6 5 4 8 8 C 1.52998 * 109.46880 * 60.00204 * 6 5 4 9 9 C 1.50702 * 109.46858 * 179.97438 * 6 5 4 10 10 H 1.07999 * 120.00376 * 0.02562 * 9 6 5 11 11 C 1.37885 * 119.99921 * 180.02562 * 9 6 5 12 12 N 1.31519 * 119.99680 * 359.97438 * 11 9 6 13 13 Si 1.86797 * 119.99757 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47279 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.46691 * 120.00036 * 13 11 9 16 16 H 1.48501 * 109.46821 * 239.99473 * 13 11 9 17 17 C 1.50704 * 109.47180 * 239.99571 * 2 1 3 18 18 C 1.38675 * 120.41697 * 99.99984 * 17 2 1 19 19 C 1.38628 * 118.42013 * 180.02562 * 18 17 2 20 20 C 1.38220 * 119.16327 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.61973 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.46935 * 299.99841 * 21 20 19 23 23 F 1.39897 * 109.47138 * 59.99930 * 21 20 19 24 24 N 1.31857 * 120.76192 * 359.97200 * 20 19 18 25 25 C 1.31883 * 121.72598 * 0.02562 * 24 20 19 26 26 H 1.08997 * 109.47085 * 60.00239 * 1 2 3 27 27 H 1.08999 * 109.47596 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47204 * 300.00161 * 1 2 3 29 29 H 1.00900 * 111.00645 * 151.04559 * 4 2 1 30 30 H 1.09002 * 109.46713 * 299.99621 * 5 4 2 31 31 H 1.09000 * 109.47189 * 59.99845 * 5 4 2 32 32 H 1.08992 * 109.46812 * 59.99976 * 7 6 5 33 33 H 1.08999 * 109.46676 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.46828 * 300.00369 * 7 6 5 35 35 H 1.08994 * 109.47619 * 59.99883 * 8 6 5 36 36 H 1.09008 * 109.46986 * 179.97438 * 8 6 5 37 37 H 1.08998 * 109.47260 * 299.99270 * 8 6 5 38 38 H 0.96999 * 119.99284 * 180.02562 * 12 11 9 39 39 H 1.07998 * 120.78542 * 359.75048 * 18 17 2 40 40 H 1.07996 * 120.41751 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.47204 * 180.02562 * 21 20 19 42 42 H 1.08007 * 119.61726 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2227 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 1.6452 -1.6889 3.8953 8 6 3.9921 -1.0861 3.2862 9 6 2.6600 0.4059 4.7514 10 1 2.3648 1.4383 4.6356 11 6 3.0964 -0.0531 5.9762 12 7 3.4554 -1.3104 6.1174 13 14 3.1762 1.1107 7.4352 14 1 2.7209 2.4608 7.0170 15 1 2.2971 0.6052 8.5201 16 1 4.5747 1.1910 7.9283 17 6 2.0323 -0.7105 -1.2304 18 6 2.4621 0.0130 -2.3327 19 6 2.9155 -0.6828 -3.4426 20 6 2.9236 -2.0647 -3.4143 21 6 3.4138 -2.8315 -4.6155 22 9 2.6222 -2.5159 -5.7250 23 9 4.7438 -2.4862 -4.8782 24 7 2.5073 -2.7199 -2.3484 25 6 2.0695 -2.0911 -1.2750 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 2.9173 -1.1205 1.0288 30 1 2.7588 1.0462 2.1181 31 1 1.0870 0.6164 2.5525 32 1 1.5986 -2.3678 3.0439 33 1 2.0102 -2.2269 4.7701 34 1 0.6499 -1.2948 4.1006 35 1 4.6688 -0.2628 3.0576 36 1 4.3575 -1.6242 4.1609 37 1 3.9456 -1.7652 2.4348 38 1 3.7620 -1.6333 6.9792 39 1 2.4399 1.0927 -2.3280 40 1 3.2574 -0.1518 -4.3187 41 1 3.3484 -3.9009 -4.4154 42 1 1.7362 -2.6618 -0.4208 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595053607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:09 Heat of formation + Delta-G solvation = -74.245003 kcal Electronic energy + Delta-G solvation = -24058.775776 eV Core-core repulsion = 20288.119354 eV Total energy + Delta-G solvation = -3770.656422 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.155 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.29227 -47.28032 -40.60535 -37.45291 -35.23160 -32.74422 -32.11967 -30.92273 -28.93247 -26.85403 -25.59802 -25.26668 -24.23560 -24.11366 -22.55277 -20.62774 -18.55547 -18.03523 -17.78891 -17.53190 -16.46594 -16.29154 -15.64771 -14.93962 -14.65926 -14.56140 -14.35868 -14.09938 -13.96337 -13.65375 -13.51465 -13.32776 -12.91673 -12.79813 -12.63428 -12.22922 -11.92962 -11.68150 -11.51231 -11.29908 -11.11543 -11.01169 -10.64862 -10.58922 -10.22669 -10.09425 -10.06869 -9.74816 -9.43669 -9.33501 -9.07035 -8.66279 -8.33170 -7.89216 -5.94902 -4.05438 0.65547 1.00397 3.11404 3.27858 3.36568 3.39000 3.39802 3.88174 4.19018 4.32759 4.45394 4.60502 4.63241 4.75371 4.77151 4.96715 5.10217 5.30156 5.30915 5.46641 5.53089 5.71150 5.81382 5.99486 6.04419 6.25079 6.27350 6.38803 6.40665 6.66440 6.83846 7.01724 7.11942 7.32314 7.39293 7.56789 7.64550 7.71695 7.78449 7.82183 8.16475 8.30209 8.51358 8.96103 9.59944 11.05624 Molecular weight = 298.16amu Principal moments of inertia in cm(-1) A = 0.030182 B = 0.002919 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.469113 B = 9589.720723 C = 9905.994784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.121 3.879 3 H 0.051 0.949 4 N -0.679 5.679 5 C 0.076 3.924 6 C 0.070 3.930 7 C -0.119 4.119 8 C -0.133 4.133 9 C -0.508 4.508 10 H 0.052 0.948 11 C 0.065 3.935 12 N -0.884 5.884 13 Si 0.888 3.112 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.108 4.108 18 C -0.074 4.074 19 C -0.134 4.134 20 C 0.037 3.963 21 C 0.325 3.675 22 F -0.196 7.196 23 F -0.195 7.195 24 N -0.458 5.458 25 C 0.121 3.879 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.340 0.660 30 H 0.015 0.985 31 H 0.059 0.941 32 H 0.020 0.980 33 H 0.074 0.926 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.084 0.916 37 H 0.010 0.990 38 H 0.258 0.742 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.256 -0.499 -18.935 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.069 0.931 4 N -0.312 5.312 5 C -0.052 4.052 6 C 0.069 3.931 7 C -0.177 4.177 8 C -0.190 4.190 9 C -0.546 4.546 10 H 0.070 0.930 11 C -0.136 4.136 12 N -0.522 5.522 13 Si 0.716 3.284 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.212 1.212 17 C -0.111 4.111 18 C -0.100 4.100 19 C -0.154 4.154 20 C -0.101 4.101 21 C 0.271 3.729 22 F -0.177 7.177 23 F -0.176 7.176 24 N -0.166 5.166 25 C -0.036 4.036 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.160 0.840 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.093 0.907 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.102 0.898 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.771 -1.767 -18.668 18.955 hybrid contribution 0.913 2.300 0.530 2.531 sum -1.858 0.533 -18.138 18.240 Atomic orbital electron populations 1.21768 0.93381 1.02657 1.01305 1.20474 0.96311 0.95297 0.86842 0.93066 1.60800 1.33583 1.33752 1.03081 1.22232 0.99451 0.93014 0.90553 1.18091 0.91801 0.93208 0.90004 1.21639 0.97312 0.98346 1.00372 1.21842 0.98801 0.98398 1.00008 1.21136 1.43574 0.95848 0.94076 0.92955 1.24886 0.95214 0.94989 0.98470 1.69842 1.44573 1.13917 1.23903 0.86606 0.77555 0.81251 0.82955 1.19962 1.21084 1.21175 1.21316 0.97438 0.95655 0.96674 1.21545 0.95472 1.00921 0.92066 1.21814 0.99475 0.94353 0.99721 1.21406 1.01562 0.91947 0.95201 1.20081 0.72714 0.99938 0.80186 1.93016 1.74298 1.94992 1.55420 1.93024 1.35740 1.94356 1.94492 1.67307 1.08802 1.41008 0.99505 1.22820 0.94000 0.91752 0.95075 0.93184 0.91795 0.91636 0.84047 0.96712 0.92217 0.96089 0.90735 0.96264 0.96272 0.89754 0.97129 0.93208 0.84178 0.84414 0.85203 0.80709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.39 37.15 0.35 -1.26 16 2 C 0.12 1.58 2.84 -68.87 -0.20 1.38 16 3 H 0.05 0.67 7.69 -51.93 -0.40 0.27 16 4 N -0.68 -10.85 4.92 -107.95 -0.53 -11.39 16 5 C 0.08 1.46 4.38 -3.82 -0.02 1.45 16 6 C 0.07 1.61 0.57 -155.66 -0.09 1.52 16 7 C -0.12 -2.77 8.10 37.16 0.30 -2.47 16 8 C -0.13 -3.04 7.92 37.16 0.29 -2.74 16 9 C -0.51 -13.28 8.01 -34.44 -0.28 -13.56 16 10 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 11 C 0.07 1.74 5.15 -17.81 -0.09 1.65 16 12 N -0.88 -24.03 9.35 55.43 0.52 -23.51 16 13 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 C -0.11 -1.30 4.72 -104.48 -0.49 -1.79 16 18 C -0.07 -0.78 9.82 -39.28 -0.39 -1.16 16 19 C -0.13 -1.41 9.63 -39.44 -0.38 -1.79 16 20 C 0.04 0.43 6.28 -82.59 -0.52 -0.09 16 21 C 0.33 3.20 5.54 36.01 0.20 3.39 16 22 F -0.20 -2.05 17.25 2.25 0.04 -2.01 16 23 F -0.19 -2.11 17.25 2.25 0.04 -2.07 16 24 N -0.46 -5.88 10.25 -9.47 -0.10 -5.97 16 25 C 0.12 1.54 10.19 -17.55 -0.18 1.36 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.85 7.45 -51.93 -0.39 0.46 16 29 H 0.34 5.56 6.04 -39.29 -0.24 5.32 16 30 H 0.01 0.29 8.06 -51.93 -0.42 -0.13 16 31 H 0.06 1.17 7.44 -51.93 -0.39 0.79 16 32 H 0.02 0.44 7.60 -51.93 -0.39 0.04 16 33 H 0.07 1.93 6.07 -51.93 -0.32 1.62 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 2.17 6.07 -51.92 -0.32 1.85 16 37 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 38 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 39 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 41 H 0.13 1.00 8.11 -51.93 -0.42 0.58 16 42 H 0.18 2.20 7.73 -52.48 -0.41 1.80 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -27.40 345.98 -7.42 -34.82 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.10 Total: 3.30 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.48 Total: -14.12 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.11 Total: -40.87 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.08 Total: -4.08 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.40 -7.42 -34.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595053607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.425 kcal (2) G-P(sol) polarization free energy of solvation -27.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds