Wall clock time and date at job start Tue Mar 31 2020 07:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45209 * 109.46914 * 2 1 4 4 C 1.34228 * 116.99823 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99815 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99922 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.46841 * 173.69723 * 6 4 3 8 8 N 1.46906 * 109.45983 * 56.05156 * 7 6 4 9 9 C 1.53044 * 109.44546 * 176.00943 * 7 6 4 10 10 C 1.53194 * 109.31028 * 181.37818 * 9 7 6 11 11 N 1.46923 * 108.77787 * 305.36909 * 10 9 7 12 12 C 1.34781 * 120.62685 * 233.58543 * 11 10 9 13 13 O 1.21290 * 119.99348 * 180.02562 * 12 11 10 14 14 C 1.50690 * 120.00448 * 0.02562 * 12 11 10 15 15 C 1.50701 * 109.47470 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99373 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00330 * 180.02562 * 15 14 12 18 18 N 1.31519 * 119.99647 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00130 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46730 * 60.00265 * 19 17 15 21 21 H 1.48498 * 109.46984 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47274 * 300.00229 * 19 17 15 23 23 C 1.46920 * 118.73950 * 53.60818 * 11 10 9 24 24 C 1.53038 * 109.46628 * 296.07554 * 7 6 4 25 25 H 1.09005 * 109.46756 * 299.99494 * 1 2 3 26 26 H 1.08994 * 109.47102 * 59.99871 * 1 2 3 27 27 H 1.08997 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46962 * 240.00767 * 2 1 3 29 29 H 1.08993 * 109.47623 * 120.00175 * 2 1 3 30 30 H 1.09000 * 109.46854 * 53.70206 * 6 4 3 31 31 H 1.08992 * 109.46616 * 293.69605 * 6 4 3 32 32 H 1.00892 * 111.00049 * 57.26390 * 8 7 6 33 33 H 1.00901 * 110.99679 * 181.21971 * 8 7 6 34 34 H 1.08997 * 109.50062 * 301.33734 * 9 7 6 35 35 H 1.09008 * 109.49419 * 61.43230 * 9 7 6 36 36 H 1.09007 * 109.58488 * 185.58187 * 10 9 7 37 37 H 1.09003 * 109.58488 * 65.16136 * 10 9 7 38 38 H 1.08998 * 109.47536 * 300.00372 * 14 12 11 39 39 H 1.09004 * 109.46866 * 59.99880 * 14 12 11 40 40 H 0.96998 * 119.99491 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.58861 * 186.60069 * 23 11 10 42 42 H 1.09004 * 109.58740 * 66.17842 * 23 11 10 43 43 H 1.09005 * 109.49608 * 298.58140 * 24 7 6 44 44 H 1.09000 * 109.49343 * 58.64379 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9376 0.0000 7 6 5.4406 2.8607 0.1576 8 7 6.0009 2.0167 -0.9063 9 6 6.0349 4.2675 0.0584 10 6 7.5595 4.1833 0.1821 11 7 7.8947 3.4727 1.4236 12 6 8.7290 4.0247 2.3269 13 8 8.9983 3.4277 3.3478 14 6 9.3272 5.3834 2.0684 15 6 10.2160 5.7689 3.2228 16 1 10.3360 5.0969 4.0597 17 6 10.8759 6.9794 3.2105 18 7 10.7294 7.7979 2.1916 19 14 11.9771 7.4575 4.6417 20 1 13.0652 6.4570 4.7847 21 1 12.5666 8.7964 4.3869 22 1 11.1753 7.4986 5.8909 23 6 7.3037 2.1489 1.6615 24 6 5.7820 2.2558 1.5213 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.4978 3.5053 0.8288 31 1 3.6775 3.4316 -0.9406 32 1 5.7511 2.3702 -1.8176 33 1 7.0021 1.9338 -0.8125 34 1 5.7716 4.7067 -0.9038 35 1 5.6384 4.8875 0.8625 36 1 7.9799 5.1886 0.2116 37 1 7.9659 3.6400 -0.6711 38 1 9.9151 5.3532 1.1511 39 1 8.5287 6.1181 1.9641 40 1 11.1939 8.6493 2.1828 41 1 7.5552 1.8117 2.6671 42 1 7.6891 1.4396 0.9290 43 1 5.3879 2.8947 2.3116 44 1 5.3382 1.2634 1.6004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143206939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:53 Heat of formation + Delta-G solvation = -125.340254 kcal Electronic energy + Delta-G solvation = -24958.137670 eV Core-core repulsion = 21296.353107 eV Total energy + Delta-G solvation = -3661.784563 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.81828 -39.67119 -37.82339 -36.42749 -34.09125 -33.00196 -32.06234 -31.22688 -30.02472 -29.35162 -28.34443 -24.63651 -23.84302 -23.13313 -22.52453 -21.04221 -19.64825 -18.17934 -17.59995 -16.85313 -16.67622 -16.33419 -16.04295 -15.52413 -15.26041 -14.90798 -14.66437 -14.33861 -14.22171 -14.00998 -13.41505 -13.13593 -12.97798 -12.81708 -12.60933 -12.51821 -12.06958 -12.00744 -11.85143 -11.80349 -11.56790 -11.25685 -11.08118 -10.97074 -10.79093 -10.62550 -10.60388 -10.46134 -10.26230 -9.95106 -9.24350 -8.64311 -8.57696 -8.44328 -8.09134 -6.07105 -4.06368 2.27146 2.54694 3.36956 3.38833 3.43995 3.62066 3.67022 4.30135 4.47057 4.49013 4.54789 4.64819 4.70056 4.80405 4.89277 4.99145 5.12619 5.26399 5.29731 5.31534 5.36433 5.43754 5.46844 5.50753 5.64649 5.68158 5.72718 5.90579 5.95637 6.04756 6.11199 6.28183 6.38864 6.43636 7.01938 7.12848 7.19420 7.29452 7.41041 7.83215 7.94934 7.97389 8.36628 9.04014 9.20172 9.58760 11.05245 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.036887 B = 0.002848 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.892440 B = 9829.230537 C = 9971.365557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.370 6.370 4 C 0.456 3.544 5 O -0.467 6.467 6 C -0.102 4.102 7 C 0.135 3.865 8 N -0.824 5.824 9 C -0.164 4.164 10 C 0.111 3.889 11 N -0.630 5.630 12 C 0.517 3.483 13 O -0.544 6.544 14 C 0.008 3.992 15 C -0.508 4.508 16 H 0.074 0.926 17 C 0.055 3.945 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.112 3.888 24 C -0.124 4.124 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.333 0.667 33 H 0.345 0.655 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.262 0.738 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.329 -10.657 -9.946 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.288 6.288 4 C 0.297 3.703 5 O -0.350 6.350 6 C -0.140 4.140 7 C 0.042 3.958 8 N -0.355 5.355 9 C -0.205 4.205 10 C -0.013 4.013 11 N -0.366 5.366 12 C 0.309 3.691 13 O -0.420 6.420 14 C -0.031 4.031 15 C -0.547 4.547 16 H 0.092 0.908 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.011 4.011 24 C -0.163 4.163 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.327 -11.728 -9.117 24.377 hybrid contribution 0.996 1.157 0.211 1.541 sum -18.332 -10.571 -8.906 22.959 Atomic orbital electron populations 1.21803 0.92941 1.02814 1.03398 1.22930 0.95064 0.80598 1.02453 1.86506 1.25454 1.32084 1.84804 1.23512 0.80130 0.92994 0.73712 1.90712 1.59592 1.42364 1.42362 1.21512 0.95448 0.91566 1.05456 1.20519 0.90782 0.90996 0.93550 1.58942 1.17831 1.54429 1.04293 1.22737 0.97064 0.97644 1.03020 1.21591 0.93881 0.99159 0.86640 1.48423 1.48539 1.18766 1.20914 1.22046 0.76350 0.89198 0.81532 1.90529 1.60143 1.64209 1.27088 1.19227 0.96837 0.87329 0.99672 1.21148 1.26193 1.02742 1.04612 0.90787 1.25000 0.96919 0.96266 0.96392 1.69945 1.43616 1.10190 1.30397 0.86480 0.80720 0.77291 0.82512 1.20119 1.21361 1.20123 1.21392 0.91778 0.85095 1.02870 1.22057 0.97085 1.02406 0.94735 0.91553 0.91605 0.90415 0.91416 0.91423 0.87645 0.87971 0.85502 0.83928 0.90764 0.90434 0.88155 0.92479 0.93607 0.93583 0.92865 0.89308 0.91981 0.91641 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.50 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.37 -3.79 10.22 -39.25 -0.40 -4.20 16 4 C 0.46 5.05 7.41 36.01 0.27 5.32 16 5 O -0.47 -6.37 12.89 -18.75 -0.24 -6.62 16 6 C -0.10 -0.91 4.99 -27.88 -0.14 -1.05 16 7 C 0.13 1.44 0.54 -131.56 -0.07 1.37 16 8 N -0.82 -8.64 7.09 0.78 0.01 -8.63 16 9 C -0.16 -1.78 5.07 -26.61 -0.13 -1.91 16 10 C 0.11 1.54 5.90 -3.71 -0.02 1.51 16 11 N -0.63 -11.02 2.97 -172.77 -0.51 -11.53 16 12 C 0.52 11.92 7.69 -10.99 -0.08 11.84 16 13 O -0.54 -14.41 14.87 5.55 0.08 -14.33 16 14 C 0.01 0.21 3.81 -29.04 -0.11 0.10 16 15 C -0.51 -14.80 8.92 -34.44 -0.31 -15.11 16 16 H 0.07 2.26 6.75 -52.49 -0.35 1.90 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 19 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.11 1.75 5.99 -3.72 -0.02 1.73 16 24 C -0.12 -1.63 4.83 -26.62 -0.13 -1.76 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 29 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.33 2.88 8.99 -39.30 -0.35 2.53 16 33 H 0.34 3.82 5.58 -39.29 -0.22 3.60 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.10 1.55 5.93 -51.93 -0.31 1.24 16 37 H 0.06 0.69 6.96 -51.93 -0.36 0.33 16 38 H 0.05 1.17 7.94 -51.93 -0.41 0.76 16 39 H 0.05 1.17 7.69 -51.93 -0.40 0.77 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.09 1.59 7.01 -51.93 -0.36 1.22 16 42 H 0.06 0.91 6.89 -51.93 -0.36 0.55 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.22 6.07 -51.93 -0.32 0.90 16 LS Contribution 348.81 15.07 5.26 5.26 Total: -1.00 -33.93 348.81 -7.14 -41.07 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.81 Total: 3.51 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -0.24 Total: 3.76 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.23 Total: -45.63 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.56 Total: -25.14 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.93 -7.14 -41.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143206939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.269 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds