Wall clock time and date at job start Tue Mar 31 2020 07:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45209 * 109.46914 * 2 1 4 4 C 1.34228 * 116.99823 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99815 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99922 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.46841 * 173.69723 * 6 4 3 8 8 N 1.46906 * 109.45983 * 56.05156 * 7 6 4 9 9 C 1.53044 * 109.44546 * 176.00943 * 7 6 4 10 10 C 1.53194 * 109.31028 * 181.37818 * 9 7 6 11 11 N 1.46923 * 108.77787 * 305.36909 * 10 9 7 12 12 C 1.34781 * 120.62685 * 233.58543 * 11 10 9 13 13 O 1.21290 * 119.99348 * 180.02562 * 12 11 10 14 14 C 1.50690 * 120.00448 * 0.02562 * 12 11 10 15 15 C 1.50701 * 109.47470 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99373 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00330 * 180.02562 * 15 14 12 18 18 N 1.31519 * 119.99647 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00130 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46730 * 60.00265 * 19 17 15 21 21 H 1.48498 * 109.46984 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47274 * 300.00229 * 19 17 15 23 23 C 1.46920 * 118.73950 * 53.60818 * 11 10 9 24 24 C 1.53038 * 109.46628 * 296.07554 * 7 6 4 25 25 H 1.09005 * 109.46756 * 299.99494 * 1 2 3 26 26 H 1.08994 * 109.47102 * 59.99871 * 1 2 3 27 27 H 1.08997 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46962 * 240.00767 * 2 1 3 29 29 H 1.08993 * 109.47623 * 120.00175 * 2 1 3 30 30 H 1.09000 * 109.46854 * 53.70206 * 6 4 3 31 31 H 1.08992 * 109.46616 * 293.69605 * 6 4 3 32 32 H 1.00892 * 111.00049 * 57.26390 * 8 7 6 33 33 H 1.00901 * 110.99679 * 181.21971 * 8 7 6 34 34 H 1.08997 * 109.50062 * 301.33734 * 9 7 6 35 35 H 1.09008 * 109.49419 * 61.43230 * 9 7 6 36 36 H 1.09007 * 109.58488 * 185.58187 * 10 9 7 37 37 H 1.09003 * 109.58488 * 65.16136 * 10 9 7 38 38 H 1.08998 * 109.47536 * 300.00372 * 14 12 11 39 39 H 1.09004 * 109.46866 * 59.99880 * 14 12 11 40 40 H 0.96998 * 119.99491 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.58861 * 186.60069 * 23 11 10 42 42 H 1.09004 * 109.58740 * 66.17842 * 23 11 10 43 43 H 1.09005 * 109.49608 * 298.58140 * 24 7 6 44 44 H 1.09000 * 109.49343 * 58.64379 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9376 0.0000 7 6 5.4406 2.8607 0.1576 8 7 6.0009 2.0167 -0.9063 9 6 6.0349 4.2675 0.0584 10 6 7.5595 4.1833 0.1821 11 7 7.8947 3.4727 1.4236 12 6 8.7290 4.0247 2.3269 13 8 8.9983 3.4277 3.3478 14 6 9.3272 5.3834 2.0684 15 6 10.2160 5.7689 3.2228 16 1 10.3360 5.0969 4.0597 17 6 10.8759 6.9794 3.2105 18 7 10.7294 7.7979 2.1916 19 14 11.9771 7.4575 4.6417 20 1 13.0652 6.4570 4.7847 21 1 12.5666 8.7964 4.3869 22 1 11.1753 7.4986 5.8909 23 6 7.3037 2.1489 1.6615 24 6 5.7820 2.2558 1.5213 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.4978 3.5053 0.8288 31 1 3.6775 3.4316 -0.9406 32 1 5.7511 2.3702 -1.8176 33 1 7.0021 1.9338 -0.8125 34 1 5.7716 4.7067 -0.9038 35 1 5.6384 4.8875 0.8625 36 1 7.9799 5.1886 0.2116 37 1 7.9659 3.6400 -0.6711 38 1 9.9151 5.3532 1.1511 39 1 8.5287 6.1181 1.9641 40 1 11.1939 8.6493 2.1828 41 1 7.5552 1.8117 2.6671 42 1 7.6891 1.4396 0.9290 43 1 5.3879 2.8947 2.3116 44 1 5.3382 1.2634 1.6004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143206939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:52 Heat of formation + Delta-G solvation = -148.588100 kcal Electronic energy + Delta-G solvation = -24959.145773 eV Core-core repulsion = 21296.353107 eV Total energy + Delta-G solvation = -3662.792665 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77410 -40.92112 -39.20316 -37.36754 -35.42217 -35.15258 -32.68458 -32.51810 -30.94796 -30.79311 -29.79962 -26.19628 -25.13959 -24.12499 -23.70868 -21.96650 -20.89913 -19.39326 -18.65329 -18.48897 -17.65921 -17.58693 -17.21053 -16.95120 -16.66062 -16.25405 -16.18492 -15.52300 -15.16413 -15.01358 -14.64888 -14.52156 -14.16403 -14.03671 -13.65184 -13.55771 -13.29751 -13.25502 -13.01024 -12.77867 -12.66765 -12.61952 -12.46246 -12.38520 -12.29122 -12.11579 -11.93430 -11.52351 -11.39004 -11.37409 -11.15401 -10.63497 -10.47226 -9.60170 -9.38456 -8.26439 -6.33487 1.39122 1.41716 1.45103 1.50392 1.80944 1.86049 2.13550 2.43173 3.08616 3.47953 3.58828 3.68534 3.83532 4.00079 4.05580 4.07678 4.15001 4.18116 4.29499 4.40340 4.42121 4.55358 4.59101 4.65074 4.79273 4.82007 4.92983 4.96024 4.96840 5.00827 5.04662 5.10621 5.20630 5.22241 5.25554 5.62431 5.67270 5.77167 6.04397 6.29953 6.52769 6.67708 6.79056 7.01926 7.32295 7.44721 8.85260 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.036887 B = 0.002848 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.892440 B = 9829.230537 C = 9971.365557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.057 3.943 3 O -0.373 6.373 4 C 0.455 3.545 5 O -0.498 6.498 6 C -0.098 4.098 7 C 0.143 3.857 8 N -0.828 5.828 9 C -0.154 4.154 10 C 0.102 3.898 11 N -0.616 5.616 12 C 0.515 3.485 13 O -0.589 6.589 14 C 0.018 3.982 15 C -0.541 4.541 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.962 3.038 20 H -0.274 1.274 21 H -0.272 1.272 22 H -0.273 1.273 23 C 0.113 3.887 24 C -0.116 4.116 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.347 0.653 33 H 0.341 0.659 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.268 0.732 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.785 -10.206 -11.340 25.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 O -0.291 6.291 4 C 0.298 3.702 5 O -0.385 6.385 6 C -0.136 4.136 7 C 0.049 3.951 8 N -0.360 5.360 9 C -0.194 4.194 10 C -0.020 4.020 11 N -0.350 5.350 12 C 0.306 3.694 13 O -0.469 6.469 14 C -0.021 4.021 15 C -0.579 4.579 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.787 3.213 20 H -0.199 1.199 21 H -0.197 1.197 22 H -0.198 1.198 23 C -0.009 4.009 24 C -0.155 4.155 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.137 0.863 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.129 0.871 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.840 -11.272 -10.577 25.947 hybrid contribution 1.396 0.958 0.571 1.787 sum -19.444 -10.314 -10.006 24.178 Atomic orbital electron populations 1.21810 0.90865 1.04090 1.03583 1.23129 0.96717 0.79796 1.02058 1.86509 1.25043 1.33098 1.84455 1.23906 0.80191 0.93436 0.72686 1.90705 1.60246 1.43505 1.44001 1.21546 0.93644 0.90729 1.07656 1.20394 0.92219 0.90456 0.92019 1.58899 1.17501 1.54625 1.05016 1.22688 0.94143 0.97824 1.04787 1.21894 0.96542 0.98186 0.85387 1.48304 1.46542 1.19290 1.20857 1.21622 0.77272 0.88593 0.81916 1.90500 1.62201 1.65046 1.29174 1.19005 0.96205 0.88767 0.98140 1.21353 1.27969 1.03182 1.05377 0.93056 1.25749 0.97954 0.95963 0.98953 1.70006 1.44013 1.10466 1.31585 0.85543 0.78856 0.77524 0.79364 1.19943 1.19654 1.19844 1.21478 0.93711 0.84018 1.01727 1.21968 0.94549 1.02352 0.96616 0.91531 0.91184 0.88631 0.91612 0.92097 0.86291 0.84930 0.83891 0.84403 0.87137 0.91104 0.89782 0.89972 0.94179 0.93973 0.92315 0.92104 0.90556 0.92224 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 71.98 0.74 -0.68 16 2 C 0.06 0.88 6.19 71.98 0.45 1.32 16 3 O -0.37 -6.96 10.22 -51.39 -0.53 -7.49 16 4 C 0.46 9.19 7.41 71.24 0.53 9.72 16 5 O -0.50 -12.99 12.89 21.95 0.28 -12.71 16 6 C -0.10 -1.45 4.99 29.85 0.15 -1.30 16 7 C 0.14 2.68 0.54 3.55 0.00 2.68 16 8 N -0.83 -15.21 7.09 -151.45 -1.07 -16.29 16 9 C -0.15 -2.90 5.07 30.67 0.16 -2.75 16 10 C 0.10 2.68 5.90 86.36 0.51 3.19 16 11 N -0.62 -21.61 2.97 -818.91 -2.43 -24.04 16 12 C 0.51 24.51 7.69 87.65 0.67 25.18 16 13 O -0.59 -32.64 14.87 -3.06 -0.05 -32.69 16 14 C 0.02 0.94 3.81 29.10 0.11 1.05 16 15 C -0.54 -32.34 8.92 25.60 0.23 -32.11 16 16 H 0.05 3.25 6.75 -2.91 -0.02 3.23 16 17 C 0.01 0.74 5.46 84.65 0.46 1.20 16 18 N -0.92 -53.48 13.29 21.45 0.28 -53.19 16 19 Si 0.96 45.61 29.54 68.60 2.03 47.63 16 20 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 23 C 0.11 3.55 5.99 86.36 0.52 4.07 16 24 C -0.12 -2.96 4.83 30.67 0.15 -2.82 16 25 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 1.03 8.13 -2.39 -0.02 1.02 16 29 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 30 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.35 4.78 8.99 -89.70 -0.81 3.97 16 33 H 0.34 6.76 5.58 -89.69 -0.50 6.26 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.08 2.53 5.93 -2.38 -0.01 2.52 16 37 H 0.08 1.79 6.96 -2.39 -0.02 1.77 16 38 H 0.04 2.10 7.94 -2.39 -0.02 2.08 16 39 H 0.04 2.20 7.69 -2.38 -0.02 2.18 16 40 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.06 2.27 7.01 -2.39 -0.02 2.25 16 42 H 0.08 2.20 6.89 -2.39 -0.02 2.18 16 43 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.08 2.26 6.07 -2.39 -0.01 2.24 16 Total: -1.00 -75.10 348.81 2.90 -72.19 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -0.29 Total: 17.81 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 4.67 Total: 8.77 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -3.22 Total: -93.52 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -0.29 Total: -52.89 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.10 2.90 -72.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143206939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.393 kcal (2) G-P(sol) polarization free energy of solvation -75.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds