Wall clock time and date at job start Tue Mar 31 2020 07:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47142 * 2 1 4 4 C 1.50699 * 109.47223 * 120.00564 * 2 1 3 5 5 H 1.07993 * 120.00253 * 119.99662 * 4 2 1 6 6 C 1.37882 * 119.99723 * 299.99951 * 4 2 1 7 7 N 1.31518 * 120.00030 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99752 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47029 * 90.00256 * 8 6 4 10 10 H 1.48508 * 109.46785 * 209.99794 * 8 6 4 11 11 H 1.48488 * 109.47421 * 329.99748 * 8 6 4 12 12 N 1.46505 * 109.46999 * 240.00169 * 2 1 3 13 13 C 1.34780 * 119.99718 * 85.00124 * 12 2 1 14 14 O 1.21274 * 120.00136 * 359.97438 * 13 12 2 15 15 C 1.50694 * 119.99580 * 180.27316 * 13 12 2 16 16 H 1.09001 * 115.55464 * 26.17980 * 15 13 12 17 17 C 1.53010 * 117.49792 * 171.84633 * 15 13 12 18 18 C 1.52998 * 117.50138 * 240.50593 * 15 13 12 19 19 H 1.08994 * 117.50190 * 145.02023 * 18 15 13 20 20 N 1.46507 * 117.49755 * 0.02562 * 18 15 13 21 21 C 1.34767 * 120.00222 * 154.14701 * 20 18 15 22 22 O 1.21514 * 120.00119 * 359.97438 * 21 20 18 23 23 O 1.34639 * 120.00222 * 179.97438 * 21 20 18 24 24 C 1.45207 * 117.00087 * 179.97438 * 23 21 20 25 25 C 1.52997 * 109.46516 * 60.00156 * 24 23 21 26 26 C 1.52995 * 109.46627 * 180.02562 * 24 23 21 27 27 C 1.52997 * 109.47009 * 300.00039 * 24 23 21 28 28 H 1.09004 * 109.47294 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46912 * 299.99826 * 1 2 3 30 30 H 1.08998 * 109.47277 * 60.00040 * 1 2 3 31 31 H 0.96998 * 119.99907 * 180.02562 * 7 6 4 32 32 H 0.96994 * 120.00050 * 265.00331 * 12 2 1 33 33 H 1.08989 * 117.49811 * 214.98103 * 17 15 13 34 34 H 1.09000 * 117.49673 * 359.97438 * 17 15 13 35 35 H 0.96997 * 119.99618 * 334.14866 * 20 18 15 36 36 H 1.09000 * 109.47579 * 60.00364 * 25 24 23 37 37 H 1.09007 * 109.46662 * 179.97438 * 25 24 23 38 38 H 1.08995 * 109.47721 * 299.99442 * 25 24 23 39 39 H 1.08995 * 109.47431 * 60.00249 * 26 24 23 40 40 H 1.09002 * 109.46562 * 180.02562 * 26 24 23 41 41 H 1.09000 * 109.47532 * 299.99675 * 26 24 23 42 42 H 1.09005 * 109.47154 * 60.00443 * 27 24 23 43 43 H 1.09002 * 109.46691 * 179.97438 * 27 24 23 44 44 H 1.08995 * 109.47229 * 299.99862 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3225 -1.1198 4.0078 9 1 3.6305 -0.5443 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4880 -2.5655 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8582 1.1584 -2.4117 15 6 2.6435 -0.7300 -3.5891 16 1 2.4607 -1.8042 -3.6172 17 6 2.5877 0.0309 -4.9154 18 6 3.9341 -0.2161 -4.2302 19 1 4.6003 -0.9521 -4.6802 20 7 4.5931 0.9301 -3.5990 21 6 5.9202 1.1107 -3.7484 22 8 6.5704 0.3226 -4.4062 23 8 6.5257 2.1643 -3.1688 24 6 7.9576 2.2955 -3.3717 25 6 8.2508 2.4246 -4.8677 26 6 8.4638 3.5418 -2.6427 27 6 8.6666 1.0580 -2.8178 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.7095 1.1616 3.4844 32 1 2.2489 -1.6317 -1.1527 33 1 2.3687 -0.5428 -5.8159 34 1 2.1916 1.0462 -4.8969 35 1 4.0741 1.5590 -3.0736 36 1 7.7457 3.3062 -5.2623 37 1 9.3256 2.5235 -5.0200 38 1 7.8902 1.5365 -5.3867 39 1 8.2548 3.4494 -1.5770 40 1 9.5385 3.6405 -2.7954 41 1 7.9587 4.4236 -3.0369 42 1 8.3060 0.1699 -3.3368 43 1 9.7414 1.1563 -2.9706 44 1 8.4576 0.9661 -1.7520 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585745310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:39 Heat of formation + Delta-G solvation = -103.582868 kcal Electronic energy + Delta-G solvation = -24844.344690 eV Core-core repulsion = 21183.503598 eV Total energy + Delta-G solvation = -3660.841092 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79174 -39.54748 -37.53039 -36.17891 -34.70821 -34.23128 -32.56624 -32.30997 -29.05460 -27.50480 -27.45868 -25.30366 -24.23918 -23.48022 -21.37410 -20.60822 -20.13932 -19.35445 -18.28465 -17.50221 -16.48398 -16.07935 -15.95805 -15.43741 -14.95357 -14.84677 -14.43879 -14.19553 -14.11599 -13.70780 -13.37563 -12.95740 -12.58298 -12.46465 -12.43732 -12.00989 -11.97604 -11.92190 -11.86593 -11.69937 -11.37084 -11.26943 -11.09616 -11.00068 -10.86752 -10.41640 -10.40057 -10.33308 -10.25414 -10.06063 -9.22015 -9.08369 -8.80439 -8.57920 -7.97102 -6.14991 -4.24356 2.13521 2.72302 3.09690 3.23235 3.29930 3.31780 3.90551 4.03852 4.19752 4.34588 4.62470 4.67554 4.75036 4.81121 4.83873 5.11820 5.17666 5.35737 5.39519 5.43542 5.46054 5.58357 5.64032 5.72970 5.76470 5.79309 5.89478 6.04917 6.17819 6.22235 6.42247 6.56554 6.78751 6.92931 7.11031 7.38810 7.49478 7.51463 7.66259 7.87541 8.11505 8.41751 8.60997 8.73814 9.04820 9.43229 10.90964 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.004006 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.130633 B = 6988.495349 C = 8338.832649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.700 5.700 13 C 0.529 3.471 14 O -0.558 6.558 15 C -0.197 4.197 16 H 0.129 0.871 17 C -0.159 4.159 18 C 0.124 3.876 19 H 0.148 0.852 20 N -0.679 5.679 21 C 0.658 3.342 22 O -0.575 6.575 23 O -0.361 6.361 24 C 0.136 3.864 25 C -0.183 4.183 26 C -0.142 4.142 27 C -0.184 4.184 28 H 0.026 0.974 29 H 0.090 0.910 30 H 0.015 0.985 31 H 0.264 0.736 32 H 0.390 0.610 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.419 0.581 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.024 -0.063 -13.631 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.346 5.346 13 C 0.313 3.687 14 O -0.439 6.439 15 C -0.220 4.220 16 H 0.147 0.853 17 C -0.198 4.198 18 C 0.018 3.982 19 H 0.166 0.834 20 N -0.337 5.337 21 C 0.412 3.588 22 O -0.465 6.465 23 O -0.275 6.275 24 C 0.099 3.901 25 C -0.240 4.240 26 C -0.199 4.199 27 C -0.241 4.241 28 H 0.046 0.954 29 H 0.109 0.891 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.223 0.777 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.257 0.743 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.127 0.579 -13.755 17.702 hybrid contribution 0.082 -0.744 1.231 1.441 sum 11.209 -0.164 -12.524 16.809 Atomic orbital electron populations 1.22078 0.98360 0.99162 1.00955 1.18770 0.91077 0.93958 0.79936 0.93351 1.21212 1.32495 1.13290 0.90321 0.92081 1.24882 0.94746 0.94953 0.99054 1.69901 1.35807 1.22431 1.23914 0.86448 0.78626 0.79867 0.82171 1.20545 1.21034 1.19829 1.46491 1.64106 1.13664 1.10347 1.19406 0.78325 0.86995 0.83953 1.90641 1.51968 1.16081 1.85189 1.23010 1.03074 1.01195 0.94746 0.85341 1.23501 0.99172 1.02858 0.94259 1.21448 0.87867 0.90129 0.98783 0.83425 1.44144 1.05388 1.29225 1.54991 1.17922 0.82743 0.80052 0.78069 1.90855 1.64101 1.46862 1.44663 1.86354 1.25426 1.45453 1.70271 1.22067 0.75091 0.96709 0.96229 1.22515 1.02384 1.04109 0.94961 1.21867 1.01012 0.95767 1.01275 1.22524 1.00632 0.98981 1.02010 0.95445 0.89098 0.96610 0.92551 0.77749 0.87104 0.86981 0.74322 0.92209 0.91263 0.89345 0.91225 0.90228 0.91448 0.89352 0.91264 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.62 2.56 -69.08 -0.18 6.45 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.70 11.32 55.43 0.63 -24.08 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.70 -14.23 5.07 -54.93 -0.28 -14.51 16 13 C 0.53 10.02 6.92 -10.99 -0.08 9.94 16 14 O -0.56 -12.40 14.77 5.56 0.08 -12.32 16 15 C -0.20 -2.69 6.19 -91.77 -0.57 -3.26 16 16 H 0.13 1.39 8.14 -51.93 -0.42 0.96 16 17 C -0.16 -1.89 9.97 -26.69 -0.27 -2.15 16 18 C 0.12 1.63 6.41 -67.89 -0.44 1.19 16 19 H 0.15 1.76 7.39 -51.93 -0.38 1.38 16 20 N -0.68 -10.43 5.33 -58.69 -0.31 -10.75 16 21 C 0.66 10.34 8.06 54.05 0.44 10.78 16 22 O -0.57 -9.29 11.44 -19.28 -0.22 -9.51 16 23 O -0.36 -5.43 9.94 -40.32 -0.40 -5.84 16 24 C 0.14 1.63 1.13 -90.63 -0.10 1.52 16 25 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 26 C -0.14 -1.35 8.85 37.16 0.33 -1.02 16 27 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 6.93 8.54 -40.82 -0.35 6.59 16 33 H 0.11 0.98 8.14 -51.94 -0.42 0.55 16 34 H 0.11 1.52 7.69 -51.93 -0.40 1.12 16 35 H 0.42 7.08 7.17 -40.82 -0.29 6.78 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.20 5.88 -51.93 -0.31 0.90 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -30.74 360.66 -7.31 -38.05 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -6.94 Total: 13.94 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -0.29 Total: 4.00 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.04 Total: -49.33 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.54 Total: -27.66 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.74 -7.31 -38.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585745310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.530 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds