Wall clock time and date at job start Tue Mar 31 2020 07:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.46880 * 2 1 4 4 C 1.46500 * 120.00109 * 269.99832 * 3 2 1 5 5 C 1.50701 * 109.47305 * 269.99931 * 4 3 2 6 6 H 1.07997 * 119.99726 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99868 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00075 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99732 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47006 * 119.99533 * 9 7 5 12 12 H 1.48499 * 109.46930 * 239.99966 * 9 7 5 13 13 C 1.34778 * 120.00068 * 89.99927 * 3 2 1 14 14 O 1.21280 * 120.00474 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00083 * 359.97438 * 13 3 2 16 16 N 1.46893 * 109.47325 * 179.97438 * 15 13 3 17 17 C 1.48531 * 110.99908 * 69.87679 * 16 15 13 18 18 C 1.54945 * 103.22753 * 159.72225 * 17 16 15 19 19 C 1.54595 * 102.91991 * 322.58091 * 18 17 16 20 20 H 1.08996 * 110.31566 * 263.04505 * 19 18 17 21 21 C 1.50706 * 110.30449 * 140.97217 * 19 18 17 22 22 O 1.20821 * 120.00096 * 329.22118 * 21 19 18 23 23 O 1.34232 * 119.99342 * 149.22780 * 21 19 18 24 24 C 1.47903 * 111.00061 * 187.27035 * 16 15 13 25 25 H 1.08997 * 109.92126 * 333.51325 * 24 16 15 26 26 C 1.53005 * 110.08088 * 94.71514 * 24 16 15 27 27 H 1.08999 * 109.47677 * 60.00130 * 1 2 3 28 28 H 1.09003 * 109.46878 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47459 * 299.99457 * 1 2 3 30 30 H 1.09002 * 109.47776 * 240.00178 * 2 1 3 31 31 H 1.09005 * 109.47665 * 119.99436 * 2 1 3 32 32 H 1.09001 * 109.47044 * 29.99943 * 4 3 2 33 33 H 1.09006 * 109.47149 * 149.99778 * 4 3 2 34 34 H 0.96994 * 119.99469 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47095 * 60.00019 * 15 13 3 36 36 H 1.08995 * 109.47405 * 300.00480 * 15 13 3 37 37 H 1.09001 * 110.66950 * 41.28398 * 17 16 15 38 38 H 1.08999 * 110.66700 * 278.15275 * 17 16 15 39 39 H 1.08995 * 110.72766 * 80.94419 * 18 17 16 40 40 H 1.09004 * 110.71909 * 204.04854 * 18 17 16 41 41 H 0.96698 * 116.99335 * 180.02562 * 23 21 19 42 42 H 1.08998 * 109.46985 * 174.61758 * 26 24 16 43 43 H 1.09006 * 109.46898 * 294.61949 * 26 24 16 44 44 H 1.08998 * 109.46929 * 54.61459 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2311 -1.0957 7 6 4.1493 2.3907 -2.8774 8 7 3.3492 3.1267 -3.6175 9 14 5.9133 2.0967 -3.4170 10 1 6.6007 1.2407 -2.4169 11 1 5.9204 1.4185 -4.7380 12 1 6.6214 3.3976 -3.5245 13 6 2.2428 2.0166 1.1672 14 8 2.6466 3.1602 1.1673 15 6 1.9911 1.3064 2.4723 16 7 2.3099 2.2062 3.5888 17 6 1.3194 3.3089 3.6834 18 6 1.4799 3.8056 5.1423 19 6 1.7265 2.4971 5.9277 20 1 0.7963 2.1400 6.3697 21 6 2.7629 2.7178 6.9994 22 8 3.6403 3.5316 6.8328 23 8 2.7111 2.0102 8.1388 24 6 2.2419 1.4912 4.8818 25 1 1.5534 0.6497 4.8051 26 6 3.6324 0.9920 5.2798 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.5816 1.6877 -2.0284 33 1 2.0953 3.1412 -1.1384 34 1 3.6753 3.5172 -4.4433 35 1 2.6210 0.4188 2.5303 36 1 0.9431 1.0126 2.5299 37 1 0.3098 2.9348 3.5132 38 1 1.5602 4.1039 2.9777 39 1 2.3355 4.4751 5.2298 40 1 0.5697 4.2983 5.4843 41 1 3.3973 2.1869 8.7968 42 1 3.5890 0.5516 6.2759 43 1 3.9671 0.2405 4.5646 44 1 4.3317 1.8281 5.2823 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605437310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:32 Heat of formation + Delta-G solvation = -117.565775 kcal Electronic energy + Delta-G solvation = -25285.536437 eV Core-core repulsion = 21624.089000 eV Total energy + Delta-G solvation = -3661.447436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00053 -39.40210 -38.08323 -36.24842 -35.20973 -32.95309 -32.38398 -31.54043 -30.07748 -28.12620 -26.62651 -25.34482 -23.38363 -23.00636 -22.46138 -21.08970 -19.85962 -18.40570 -18.19584 -16.83027 -16.54201 -16.37775 -16.26408 -15.70019 -15.12523 -14.90255 -14.61955 -14.17184 -13.96317 -13.39323 -13.30378 -13.14296 -12.94664 -12.59374 -12.36525 -12.20280 -12.06965 -11.97595 -11.74855 -11.57178 -11.36562 -11.26665 -11.15648 -11.12804 -10.87049 -10.82867 -10.69699 -10.57180 -10.50647 -10.08925 -9.57094 -8.88031 -8.40413 -8.30019 -7.60916 -6.01119 -4.05268 2.02020 2.79478 3.32535 3.40007 3.42824 3.49500 3.61925 4.12148 4.31674 4.34369 4.49016 4.77564 5.01195 5.06626 5.10970 5.20061 5.24933 5.30410 5.31693 5.33724 5.46601 5.52437 5.58659 5.64762 5.67714 5.76566 5.80153 6.00576 6.06207 6.13950 6.20877 6.23275 6.32988 6.45914 6.88657 6.89379 7.15364 7.48114 7.60207 7.71940 7.96201 8.27638 8.47368 8.95376 9.17723 9.60060 11.06974 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.003672 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.254456 B = 7624.226007 C = 8186.816555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.028 3.972 16 N -0.489 5.489 17 C 0.040 3.960 18 C -0.115 4.115 19 C -0.090 4.090 20 H 0.106 0.894 21 C 0.493 3.507 22 O -0.503 6.503 23 O -0.521 6.521 24 C 0.079 3.921 25 H 0.066 0.934 26 C -0.155 4.155 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.408 0.592 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 -7.190 20.087 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.397 6.397 15 C -0.103 4.103 16 N -0.213 5.213 17 C -0.087 4.087 18 C -0.153 4.153 19 C -0.110 4.110 20 H 0.124 0.876 21 C 0.334 3.666 22 O -0.390 6.390 23 O -0.333 6.333 24 C -0.030 4.030 25 H 0.084 0.916 26 C -0.213 4.213 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.266 0.734 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.136 -6.119 19.440 21.594 hybrid contribution 0.586 -0.584 0.120 0.836 sum -6.550 -6.703 19.560 21.689 Atomic orbital electron populations 1.22221 0.96932 1.01319 1.02206 1.21393 0.93366 0.84432 1.02579 1.48255 1.64221 1.13185 1.07684 1.19238 0.96199 0.93582 0.78059 1.21487 0.96954 1.31680 1.06122 0.92431 1.24931 0.97808 0.94951 0.96443 1.69941 1.35574 1.33625 1.14359 0.86454 0.84743 0.78074 0.78221 1.19806 1.21036 1.20887 1.20029 0.78961 0.87155 0.84573 1.90663 1.44453 1.17807 1.86783 1.22292 1.00336 0.96418 0.91270 1.64485 1.47955 1.08744 1.00159 1.23327 0.93076 0.95635 0.96667 1.22643 1.03551 0.95038 0.94046 1.21968 0.96936 0.99651 0.92465 0.87575 1.23085 0.85177 0.77006 0.81314 1.90744 1.35624 1.33912 1.78672 1.84560 1.56480 1.63519 1.28725 1.22249 0.97779 0.94341 0.88624 0.91607 1.22031 0.96263 1.02332 1.00641 0.91991 0.92230 0.93315 0.89940 0.91978 0.95144 0.93961 0.92838 0.88489 0.92298 0.93828 0.87531 0.88552 0.90218 0.73367 0.92214 0.91594 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.15 0.38 -1.78 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.51 2.46 -175.05 -0.43 -12.94 16 4 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 5 C -0.52 -14.98 9.39 -34.44 -0.32 -15.30 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.51 10.47 7.48 -10.98 -0.08 10.38 16 14 O -0.52 -13.12 14.42 5.56 0.08 -13.04 16 15 C 0.03 0.42 3.73 -4.98 -0.02 0.40 16 16 N -0.49 -7.26 4.60 -224.00 -1.03 -8.29 16 17 C 0.04 0.55 5.86 -1.90 -0.01 0.54 16 18 C -0.11 -1.31 6.56 -24.87 -0.16 -1.47 16 19 C -0.09 -0.91 3.48 -90.41 -0.31 -1.23 16 20 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 21 C 0.49 5.33 5.20 36.01 0.19 5.52 16 22 O -0.50 -7.22 15.73 -18.75 -0.29 -7.52 16 23 O -0.52 -4.04 13.06 -39.26 -0.51 -4.56 16 24 C 0.08 0.89 3.06 -66.64 -0.20 0.69 16 25 H 0.07 0.61 7.77 -51.93 -0.40 0.21 16 26 C -0.16 -1.78 8.38 37.16 0.31 -1.47 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 30 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.10 1.31 7.37 -51.93 -0.38 0.93 16 36 H 0.06 0.73 6.94 -51.93 -0.36 0.37 16 37 H 0.04 0.52 7.85 -51.93 -0.41 0.12 16 38 H 0.11 1.80 6.91 -51.93 -0.36 1.44 16 39 H 0.10 1.32 6.92 -51.93 -0.36 0.96 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.41 1.56 9.10 45.56 0.41 1.98 16 42 H 0.06 0.57 7.13 -51.93 -0.37 0.20 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.05 7.06 -51.93 -0.37 0.68 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -35.85 355.45 -7.69 -43.54 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.19 Total: 0.34 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -0.39 Total: 6.02 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.72 Total: -47.32 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.73 Total: -25.12 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.85 -7.69 -43.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605437310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.025 kcal (2) G-P(sol) polarization free energy of solvation -35.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds