Wall clock time and date at job start Tue Mar 31 2020 08:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46583 * 2 1 4 4 N 1.46502 * 109.46836 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99832 * 269.99917 * 4 3 2 6 6 H 1.08003 * 119.99765 * 321.72681 * 5 4 3 7 7 C 1.38811 * 119.99814 * 141.73169 * 5 4 3 8 8 N 1.31620 * 119.99861 * 341.30355 * 7 5 4 9 9 Si 1.86801 * 119.99787 * 161.30981 * 7 5 4 10 10 H 1.48496 * 109.47223 * 90.00135 * 9 7 5 11 11 H 1.48506 * 109.46963 * 209.99771 * 9 7 5 12 12 H 1.48501 * 109.47368 * 329.99344 * 9 7 5 13 13 C 1.46500 * 120.00262 * 90.00103 * 4 3 2 14 14 N 1.46502 * 109.46857 * 79.92366 * 13 4 3 15 15 C 1.47092 * 125.55885 * 90.00554 * 14 13 4 16 16 C 1.54091 * 103.77652 * 179.97438 * 15 14 13 17 17 H 1.09002 * 110.52059 * 241.36615 * 16 15 14 18 18 C 1.53004 * 110.51927 * 118.63233 * 16 15 14 19 19 C 1.53002 * 109.46859 * 175.00039 * 18 16 15 20 20 C 1.53001 * 109.47077 * 59.99788 * 19 18 16 21 21 C 1.52994 * 109.46726 * 179.97438 * 19 18 16 22 22 C 1.52998 * 109.47185 * 299.99788 * 19 18 16 23 23 O 1.45693 * 104.00880 * 359.97438 * 16 15 14 24 24 C 1.33777 * 109.47721 * 359.75181 * 23 16 15 25 25 O 1.21511 * 123.07022 * 180.23817 * 24 23 16 26 26 H 1.08995 * 109.47373 * 60.00552 * 1 2 3 27 27 H 1.08998 * 109.46654 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47433 * 299.99821 * 1 2 3 29 29 H 1.08995 * 109.47373 * 119.99448 * 2 1 3 30 30 H 1.08998 * 109.47176 * 240.00552 * 2 1 3 31 31 H 1.09007 * 109.47136 * 299.99982 * 3 2 1 32 32 H 1.08999 * 109.47432 * 59.99834 * 3 2 1 33 33 H 0.96999 * 119.99365 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47437 * 199.92798 * 13 4 3 35 35 H 1.08999 * 109.46669 * 319.92901 * 13 4 3 36 36 H 1.08999 * 110.56699 * 298.54968 * 15 14 13 37 37 H 1.09002 * 110.56516 * 61.40205 * 15 14 13 38 38 H 1.08996 * 109.46586 * 294.99485 * 18 16 15 39 39 H 1.08997 * 109.46958 * 54.99826 * 18 16 15 40 40 H 1.09000 * 109.47095 * 60.00136 * 20 19 18 41 41 H 1.09002 * 109.46486 * 180.02562 * 20 19 18 42 42 H 1.08999 * 109.47238 * 299.99793 * 20 19 18 43 43 H 1.09000 * 109.47473 * 60.00044 * 21 19 18 44 44 H 1.09009 * 109.46729 * 180.02562 * 21 19 18 45 45 H 1.08996 * 109.47188 * 299.99277 * 21 19 18 46 46 H 1.08999 * 109.47201 * 60.00164 * 22 19 18 47 47 H 1.08995 * 109.47702 * 180.02562 * 22 19 18 48 48 H 1.08997 * 109.47172 * 300.00543 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.4425 1.1850 6 1 3.8244 2.0218 2.0201 7 6 5.3546 0.6980 1.3136 8 7 5.6098 -0.2761 0.4660 9 14 6.5592 1.0785 2.6897 10 1 6.2092 0.2768 3.8897 11 1 7.9361 0.7370 2.2506 12 1 6.4901 2.5241 3.0225 13 6 4.2369 1.4429 -1.2696 14 7 4.2715 2.8029 -1.8131 15 6 5.3123 3.8063 -1.5418 16 6 4.8587 5.0344 -2.3544 17 1 5.6055 5.2928 -3.1053 18 6 4.5945 6.2229 -1.4277 19 6 4.2674 7.4603 -2.2660 20 6 3.0231 7.1879 -3.1136 21 6 4.0025 8.6485 -1.3394 22 6 5.4490 7.7818 -3.1833 23 8 3.6234 4.5987 -2.9921 24 6 3.3638 3.3334 -2.6439 25 8 2.3915 2.7226 -3.0412 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 6.4234 -0.7965 0.5561 34 1 5.2553 1.0927 -1.1017 35 1 3.7372 0.7814 -1.9773 36 1 5.3483 4.0428 -0.4784 37 1 6.2835 3.4543 -1.8898 38 1 3.7527 5.9938 -0.7743 39 1 5.4809 6.4169 -0.8239 40 1 2.1813 6.9589 -2.4601 41 1 2.7905 8.0693 -3.7112 42 1 3.2114 6.3412 -3.7738 43 1 4.8887 8.8428 -0.7352 44 1 3.7691 9.5301 -1.9366 45 1 3.1605 8.4193 -0.6863 46 1 5.6373 6.9351 -3.8435 47 1 5.2163 8.6636 -3.7802 48 1 6.3354 7.9758 -2.5795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190217841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:11 Heat of formation + Delta-G solvation = -88.486537 kcal Electronic energy + Delta-G solvation = -26367.503722 eV Core-core repulsion = 22843.150350 eV Total energy + Delta-G solvation = -3524.353371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.48363 -39.11655 -38.08055 -37.49793 -35.65314 -34.56867 -32.52210 -31.62052 -28.26880 -28.08850 -27.90182 -27.41127 -26.49908 -24.04256 -23.43650 -22.20561 -21.45595 -19.73014 -19.12417 -18.01979 -17.76476 -17.33706 -16.86912 -16.14646 -15.98284 -15.65743 -15.64191 -15.27092 -15.08557 -14.98287 -14.47294 -14.25333 -14.07663 -13.88738 -13.43781 -13.40476 -13.11053 -13.04422 -12.77977 -12.69789 -12.57116 -12.50264 -12.45022 -12.42550 -12.27340 -12.01551 -11.97686 -11.83919 -11.54711 -11.48785 -11.41699 -11.33108 -11.03566 -10.61495 -9.78510 -8.77585 -7.99775 -5.57081 1.45584 1.51127 1.60205 1.72128 1.89118 2.47365 2.70486 3.23093 3.32633 3.59795 3.68857 3.84781 3.97327 4.03320 4.20219 4.25135 4.26951 4.37384 4.57777 4.61201 4.65129 4.69298 4.77099 4.78759 4.87753 4.88414 4.92254 4.95140 5.00960 5.06770 5.10504 5.13803 5.17918 5.19016 5.23019 5.31682 5.39121 5.41188 5.53451 5.57452 5.62037 5.65473 5.75844 6.36241 6.65782 7.03872 7.19178 7.66057 8.27621 9.06714 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.005324 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.843276 B = 5257.914620 C = 6466.851298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.142 3.858 4 N -0.584 5.584 5 C -0.278 4.278 6 H 0.055 0.945 7 C -0.019 4.019 8 N -0.918 5.918 9 Si 0.964 3.036 10 H -0.288 1.288 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.396 3.604 14 N -0.626 5.626 15 C 0.067 3.933 16 C 0.072 3.928 17 H 0.141 0.859 18 C -0.112 4.112 19 C -0.066 4.066 20 C -0.141 4.141 21 C -0.138 4.138 22 C -0.143 4.143 23 O -0.331 6.331 24 C 0.627 3.373 25 O -0.585 6.585 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.259 0.741 34 H 0.105 0.895 35 H 0.035 0.965 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.109 0.891 40 H 0.032 0.968 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 15.034 -3.993 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.164 4.164 3 C 0.017 3.983 4 N -0.305 5.305 5 C -0.408 4.408 6 H 0.073 0.927 7 C -0.217 4.217 8 N -0.560 5.560 9 Si 0.791 3.209 10 H -0.215 1.215 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.189 3.811 14 N -0.377 5.377 15 C -0.057 4.057 16 C 0.018 3.982 17 H 0.158 0.842 18 C -0.150 4.150 19 C -0.066 4.066 20 C -0.198 4.198 21 C -0.195 4.195 22 C -0.200 4.200 23 O -0.242 6.242 24 C 0.381 3.619 25 O -0.475 6.475 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.053 0.947 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.089 14.723 -4.303 15.480 hybrid contribution 0.397 -0.511 0.764 1.001 sum 2.486 14.212 -3.539 14.855 Atomic orbital electron populations 1.21647 0.94421 1.01830 1.01563 1.21811 0.96077 0.98708 0.99834 1.21078 0.84285 0.94679 0.98301 1.44542 1.00777 1.82614 1.02551 1.19207 1.06752 1.23128 0.91701 0.92697 1.25909 1.01814 0.94068 0.99912 1.70067 1.26423 1.19291 1.40224 0.85370 0.78190 0.78512 0.78843 1.21480 1.21063 1.19098 1.20655 0.99220 0.77266 0.83967 1.50304 1.24309 1.16703 1.46379 1.23017 0.93248 0.87483 1.01940 1.24273 0.83789 0.94263 0.95919 0.84211 1.22054 1.03418 0.92567 0.96936 1.20523 0.96098 0.94298 0.95639 1.21976 0.96915 1.01259 0.99637 1.21837 1.01737 0.97000 0.98957 1.21941 0.97079 1.01773 0.99172 1.87334 1.43749 1.25931 1.67185 1.19076 0.83040 0.80999 0.78789 1.90902 1.31382 1.62719 1.62501 0.93185 0.91925 0.92199 0.93971 0.94958 0.94509 0.94181 0.93168 0.87732 0.94697 0.89636 0.88001 0.92928 0.87257 0.94854 0.92133 0.92363 0.91466 0.91786 0.93702 0.92502 0.91925 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.91 71.98 0.71 -3.94 16 2 C -0.12 -5.39 6.26 30.60 0.19 -5.20 16 3 C 0.14 6.60 5.71 86.38 0.49 7.09 16 4 N -0.58 -29.02 2.66 -713.72 -1.90 -30.92 16 5 C -0.28 -14.37 9.47 84.03 0.80 -13.57 16 6 H 0.06 2.87 7.90 -2.91 -0.02 2.85 16 7 C -0.02 -0.94 4.92 84.86 0.42 -0.53 16 8 N -0.92 -49.28 11.51 21.65 0.25 -49.03 16 9 Si 0.96 40.54 29.59 68.60 2.03 42.57 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 13 C 0.40 18.86 6.02 170.96 1.03 19.89 16 14 N -0.63 -25.46 3.20 -963.26 -3.08 -28.55 16 15 C 0.07 2.02 7.34 86.64 0.64 2.65 16 16 C 0.07 1.80 3.43 30.96 0.11 1.90 16 17 H 0.14 2.59 6.14 -2.39 -0.01 2.58 16 18 C -0.11 -2.39 3.94 30.60 0.12 -2.27 16 19 C -0.07 -1.20 0.80 -52.18 -0.04 -1.24 16 20 C -0.14 -3.22 7.68 71.98 0.55 -2.67 16 21 C -0.14 -2.21 8.47 71.98 0.61 -1.60 16 22 C -0.14 -2.03 8.15 71.98 0.59 -1.44 16 23 O -0.33 -11.37 7.66 -47.37 -0.36 -11.74 16 24 C 0.63 26.64 8.65 129.91 1.12 27.76 16 25 O -0.58 -29.38 16.25 19.65 0.32 -29.06 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.78 6.52 -2.38 -0.02 1.77 16 32 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 33 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 34 H 0.11 5.27 5.66 -2.39 -0.01 5.26 16 35 H 0.03 1.80 7.91 -2.39 -0.02 1.78 16 36 H 0.09 2.69 7.73 -2.39 -0.02 2.67 16 37 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.55 5.47 -2.39 -0.01 1.54 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.06 0.83 6.28 -2.39 -0.01 0.81 16 47 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -63.69 375.03 5.49 -58.19 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.91 Total: 21.69 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 7.33 Total: 26.85 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -4.74 Total: -108.50 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.04 Total: -40.80 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -63.69 5.49 -58.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190217841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.292 kcal (2) G-P(sol) polarization free energy of solvation -63.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds