Wall clock time and date at job start Tue Mar 31 2020 07:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42907 * 109.46885 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.43333 * 27.46041 * 4 3 2 6 6 C 1.54890 * 110.48717 * 264.77472 * 4 3 2 7 7 C 1.54890 * 102.74593 * 203.38087 * 6 4 3 8 8 C 1.54263 * 104.19773 * 37.94288 * 7 6 4 9 9 C 1.53876 * 106.59992 * 336.38745 * 8 7 6 10 10 H 1.08998 * 110.07286 * 119.30837 * 9 8 7 11 11 N 1.46498 * 110.03375 * 240.71944 * 9 8 7 12 12 C 1.34773 * 119.99979 * 272.16675 * 11 9 8 13 13 O 1.21284 * 120.00187 * 359.97438 * 12 11 9 14 14 C 1.50704 * 120.00235 * 179.97438 * 12 11 9 15 15 H 1.09006 * 109.46839 * 40.00007 * 14 12 11 16 16 N 1.46902 * 109.46981 * 159.99668 * 14 12 11 17 17 C 1.52992 * 109.47291 * 280.00091 * 14 12 11 18 18 C 1.52997 * 109.47465 * 174.99583 * 17 14 12 19 19 C 1.53002 * 109.47535 * 179.97438 * 18 17 14 20 20 C 1.50696 * 109.46997 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00319 * 0.02562 * 20 19 18 22 22 C 1.37885 * 119.99717 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99913 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47353 * 269.99586 * 24 22 20 26 26 H 1.48501 * 109.47293 * 30.00037 * 24 22 20 27 27 H 1.48504 * 109.46680 * 149.99835 * 24 22 20 28 28 H 1.09007 * 109.46784 * 60.00188 * 1 2 3 29 29 H 1.08999 * 109.47084 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47391 * 300.00201 * 1 2 3 31 31 H 1.08997 * 109.47391 * 239.99798 * 2 1 3 32 32 H 1.08999 * 109.46892 * 119.99437 * 2 1 3 33 33 H 1.09000 * 110.75220 * 321.69447 * 6 4 3 34 34 H 1.08997 * 110.75643 * 84.87582 * 6 4 3 35 35 H 1.09006 * 110.48266 * 156.62098 * 7 6 4 36 36 H 1.08993 * 110.48561 * 279.26015 * 7 6 4 37 37 H 1.09000 * 110.02986 * 217.10376 * 8 7 6 38 38 H 1.08998 * 110.03355 * 95.67210 * 8 7 6 39 39 H 0.97000 * 120.00259 * 92.16438 * 11 9 8 40 40 H 1.00899 * 111.00066 * 296.04546 * 16 14 12 41 41 H 1.00892 * 110.99804 * 60.00798 * 16 14 12 42 42 H 1.09005 * 109.47124 * 54.99657 * 17 14 12 43 43 H 1.09004 * 109.47330 * 294.99861 * 17 14 12 44 44 H 1.09005 * 109.46889 * 59.99930 * 18 17 14 45 45 H 1.09002 * 109.47401 * 300.00018 * 18 17 14 46 46 H 1.09005 * 109.46767 * 60.00250 * 19 18 17 47 47 H 1.09002 * 109.47113 * 300.00590 * 19 18 17 48 48 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8820 0.5867 -0.4701 6 6 3.9603 1.6349 1.4457 7 6 5.3286 2.3271 1.2270 8 6 5.0771 3.3015 0.0578 9 6 3.8705 2.7503 -0.7221 10 1 3.0580 3.4768 -0.7165 11 7 4.2610 2.4451 -2.1007 12 6 4.1943 3.4019 -3.0475 13 8 3.8107 4.5155 -2.7583 14 6 4.5965 3.0882 -4.4655 15 1 4.2386 2.0940 -4.7332 16 7 4.0068 4.0816 -5.3729 17 6 6.1213 3.1304 -4.5844 18 6 6.5356 2.6908 -5.9901 19 6 8.0604 2.7336 -6.1092 20 6 8.4684 2.3000 -7.4936 21 1 7.7156 2.0221 -8.2163 22 6 9.8031 2.2581 -7.8375 23 7 10.1592 1.8801 -9.0458 24 14 11.1052 2.7381 -6.5871 25 1 11.3797 4.1937 -6.6922 26 1 10.6185 2.4235 -5.2199 27 1 12.3528 1.9785 -6.8554 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 3.2936 2.2720 2.0268 34 1 4.0868 0.6669 1.9304 35 1 5.6268 2.8737 2.1217 36 1 6.0880 1.5938 0.9559 37 1 5.9532 3.3419 -0.5895 38 1 4.8504 4.2958 0.4425 39 1 4.5676 1.5544 -2.3321 40 1 2.9993 4.0293 -5.3608 41 1 4.3235 5.0121 -5.1453 42 1 6.5619 2.4576 -3.8487 43 1 6.4719 4.1465 -4.4034 44 1 6.0950 3.3636 -6.7259 45 1 6.1851 1.6747 -6.1711 46 1 8.5013 2.0610 -5.3734 47 1 8.4106 3.7499 -5.9283 48 1 11.0981 1.8510 -9.2878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578148708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:22 Heat of formation + Delta-G solvation = -114.777846 kcal Electronic energy + Delta-G solvation = -24587.923468 eV Core-core repulsion = 21062.430020 eV Total energy + Delta-G solvation = -3525.493448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.44592 -39.06246 -36.81516 -35.73015 -33.84885 -33.32275 -31.60020 -31.52603 -28.75055 -28.10756 -27.54470 -24.96793 -23.22630 -22.31610 -21.47675 -20.59871 -20.01830 -20.00014 -17.71284 -17.15168 -16.80381 -16.58843 -15.99890 -15.80899 -15.21758 -15.08706 -14.54013 -14.24923 -14.04693 -13.77960 -13.74635 -13.40502 -13.14238 -13.02944 -12.59153 -12.44550 -12.24702 -11.91518 -11.85496 -11.73726 -11.58065 -11.47827 -11.34387 -11.04702 -10.93562 -10.80752 -10.70799 -10.32681 -9.99400 -9.87375 -9.63996 -9.46852 -9.20662 -9.12461 -8.59688 -8.48484 -5.99215 -3.96230 2.54271 2.91544 3.31384 3.33598 3.40515 3.43928 4.06927 4.27794 4.49316 4.51657 4.56337 4.64646 4.72528 4.79345 4.83674 4.95907 5.05871 5.06546 5.11880 5.19870 5.22252 5.32498 5.34149 5.35232 5.48244 5.51148 5.63958 5.65947 5.75446 5.82700 5.84212 5.90626 5.99542 6.30459 6.31692 6.66354 6.78550 6.84813 7.02166 7.06280 7.35712 7.42120 7.49505 7.54980 7.86070 8.10401 8.61128 9.07445 9.63879 11.14497 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.002882 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.390691 B = 9713.685377 C =10171.711345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.377 6.377 4 C 0.079 3.921 5 H 0.073 0.927 6 C -0.142 4.142 7 C -0.123 4.123 8 C -0.133 4.133 9 C 0.141 3.859 10 H 0.101 0.899 11 N -0.724 5.724 12 C 0.484 3.516 13 O -0.547 6.547 14 C 0.078 3.922 15 H 0.101 0.899 16 N -0.811 5.811 17 C -0.106 4.106 18 C -0.092 4.092 19 C -0.016 4.016 20 C -0.516 4.516 21 H 0.072 0.928 22 C 0.064 3.936 23 N -0.906 5.906 24 Si 0.880 3.120 25 H -0.278 1.278 26 H -0.267 1.267 27 H -0.289 1.289 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.400 0.600 40 H 0.339 0.661 41 H 0.350 0.650 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.011 0.989 47 H 0.009 0.991 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.608 -3.504 23.312 28.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.296 6.296 4 C 0.020 3.980 5 H 0.091 0.909 6 C -0.180 4.180 7 C -0.160 4.160 8 C -0.171 4.171 9 C 0.036 3.964 10 H 0.119 0.881 11 N -0.376 5.376 12 C 0.270 3.730 13 O -0.424 6.424 14 C -0.038 4.038 15 H 0.119 0.881 16 N -0.339 5.339 17 C -0.144 4.144 18 C -0.130 4.130 19 C -0.053 4.053 20 C -0.554 4.554 21 H 0.090 0.910 22 C -0.137 4.137 23 N -0.545 5.545 24 Si 0.708 3.292 25 H -0.204 1.204 26 H -0.191 1.191 27 H -0.215 1.215 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.235 0.765 40 H 0.151 0.849 41 H 0.164 0.836 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.030 0.970 47 H 0.027 0.973 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.478 -2.942 22.790 28.277 hybrid contribution 0.683 -0.096 1.400 1.560 sum -15.795 -3.038 24.190 29.049 Atomic orbital electron populations 1.21747 0.93645 1.02303 1.03211 1.22528 0.95739 0.83679 1.00056 1.87959 1.20193 1.26521 1.94925 1.23222 0.81563 0.97446 0.95745 0.90905 1.22909 0.97301 1.01426 0.96352 1.22293 0.96666 0.98492 0.98595 1.22520 0.98063 0.99434 0.97131 1.21591 0.97447 0.96498 0.80906 0.88133 1.46277 1.67920 1.14778 1.08639 1.22539 0.76525 0.84792 0.89193 1.90673 1.46938 1.22085 1.82702 1.21738 0.98349 0.98396 0.85294 0.88147 1.59037 1.12879 1.09461 1.52568 1.21676 0.89952 1.02058 1.00749 1.21368 0.97910 1.00527 0.93195 1.19604 0.92151 0.96018 0.97551 1.21181 0.93031 1.44381 0.96800 0.90991 1.25055 0.98667 0.94874 0.95094 1.69925 1.16875 1.48660 1.19061 0.86775 0.81177 0.78746 0.82522 1.20368 1.19127 1.21526 0.91770 0.91046 0.91867 0.93268 0.93376 0.90131 0.91043 0.90969 0.91166 0.90606 0.90745 0.76524 0.84873 0.83596 0.91971 0.91923 0.91237 0.93054 0.97041 0.97267 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.40 6.50 37.16 0.24 0.64 16 3 O -0.38 -3.62 10.05 -35.23 -0.35 -3.97 16 4 C 0.08 0.65 3.05 -25.07 -0.08 0.57 16 5 H 0.07 0.51 7.41 -51.93 -0.38 0.13 16 6 C -0.14 -0.99 6.62 -24.74 -0.16 -1.15 16 7 C -0.12 -0.87 6.83 -25.07 -0.17 -1.05 16 8 C -0.13 -1.24 6.59 -25.61 -0.17 -1.41 16 9 C 0.14 1.43 3.00 -66.81 -0.20 1.23 16 10 H 0.10 1.28 7.49 -51.93 -0.39 0.89 16 11 N -0.72 -7.52 4.98 -52.72 -0.26 -7.78 16 12 C 0.48 6.36 7.06 -10.99 -0.08 6.29 16 13 O -0.55 -8.92 15.90 5.55 0.09 -8.83 16 14 C 0.08 1.02 3.15 -68.87 -0.22 0.80 16 15 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 16 N -0.81 -10.94 8.44 -5.65 -0.05 -10.98 16 17 C -0.11 -1.63 4.84 -26.74 -0.13 -1.76 16 18 C -0.09 -1.80 5.04 -26.73 -0.13 -1.93 16 19 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 20 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 21 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 22 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 23 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 24 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.32 8.11 -51.93 -0.42 -0.10 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.40 3.30 8.36 -40.82 -0.34 2.96 16 40 H 0.34 4.04 9.06 -39.29 -0.36 3.68 16 41 H 0.35 4.88 8.58 -39.30 -0.34 4.55 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.43 7.75 -51.93 -0.40 1.03 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 47 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 48 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -33.57 385.29 -8.82 -42.38 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.89 Total: 5.87 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.26 Total: -12.29 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.46 Total: -46.31 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.27 Total: -12.81 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.57 -8.82 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578148708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.395 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds