Wall clock time and date at job start Tue Mar 31 2020 07:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42907 * 109.46885 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.43333 * 27.46041 * 4 3 2 6 6 C 1.54890 * 110.48717 * 264.77472 * 4 3 2 7 7 C 1.54890 * 102.74593 * 203.38087 * 6 4 3 8 8 C 1.54263 * 104.19773 * 37.94288 * 7 6 4 9 9 C 1.53876 * 106.59992 * 336.38745 * 8 7 6 10 10 H 1.08998 * 110.07286 * 119.30837 * 9 8 7 11 11 N 1.46498 * 110.03375 * 240.71944 * 9 8 7 12 12 C 1.34773 * 119.99979 * 272.16675 * 11 9 8 13 13 O 1.21284 * 120.00187 * 359.97438 * 12 11 9 14 14 C 1.50704 * 120.00235 * 179.97438 * 12 11 9 15 15 H 1.09006 * 109.46839 * 40.00007 * 14 12 11 16 16 N 1.46902 * 109.46981 * 159.99668 * 14 12 11 17 17 C 1.52992 * 109.47291 * 280.00091 * 14 12 11 18 18 C 1.52997 * 109.47465 * 174.99583 * 17 14 12 19 19 C 1.53002 * 109.47535 * 179.97438 * 18 17 14 20 20 C 1.50696 * 109.46997 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00319 * 0.02562 * 20 19 18 22 22 C 1.37885 * 119.99717 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99913 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47353 * 269.99586 * 24 22 20 26 26 H 1.48501 * 109.47293 * 30.00037 * 24 22 20 27 27 H 1.48504 * 109.46680 * 149.99835 * 24 22 20 28 28 H 1.09007 * 109.46784 * 60.00188 * 1 2 3 29 29 H 1.08999 * 109.47084 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47391 * 300.00201 * 1 2 3 31 31 H 1.08997 * 109.47391 * 239.99798 * 2 1 3 32 32 H 1.08999 * 109.46892 * 119.99437 * 2 1 3 33 33 H 1.09000 * 110.75220 * 321.69447 * 6 4 3 34 34 H 1.08997 * 110.75643 * 84.87582 * 6 4 3 35 35 H 1.09006 * 110.48266 * 156.62098 * 7 6 4 36 36 H 1.08993 * 110.48561 * 279.26015 * 7 6 4 37 37 H 1.09000 * 110.02986 * 217.10376 * 8 7 6 38 38 H 1.08998 * 110.03355 * 95.67210 * 8 7 6 39 39 H 0.97000 * 120.00259 * 92.16438 * 11 9 8 40 40 H 1.00899 * 111.00066 * 296.04546 * 16 14 12 41 41 H 1.00892 * 110.99804 * 60.00798 * 16 14 12 42 42 H 1.09005 * 109.47124 * 54.99657 * 17 14 12 43 43 H 1.09004 * 109.47330 * 294.99861 * 17 14 12 44 44 H 1.09005 * 109.46889 * 59.99930 * 18 17 14 45 45 H 1.09002 * 109.47401 * 300.00018 * 18 17 14 46 46 H 1.09005 * 109.46767 * 60.00250 * 19 18 17 47 47 H 1.09002 * 109.47113 * 300.00590 * 19 18 17 48 48 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8820 0.5867 -0.4701 6 6 3.9603 1.6349 1.4457 7 6 5.3286 2.3271 1.2270 8 6 5.0771 3.3015 0.0578 9 6 3.8705 2.7503 -0.7221 10 1 3.0580 3.4768 -0.7165 11 7 4.2610 2.4451 -2.1007 12 6 4.1943 3.4019 -3.0475 13 8 3.8107 4.5155 -2.7583 14 6 4.5965 3.0882 -4.4655 15 1 4.2386 2.0940 -4.7332 16 7 4.0068 4.0816 -5.3729 17 6 6.1213 3.1304 -4.5844 18 6 6.5356 2.6908 -5.9901 19 6 8.0604 2.7336 -6.1092 20 6 8.4684 2.3000 -7.4936 21 1 7.7156 2.0221 -8.2163 22 6 9.8031 2.2581 -7.8375 23 7 10.1592 1.8801 -9.0458 24 14 11.1052 2.7381 -6.5871 25 1 11.3797 4.1937 -6.6922 26 1 10.6185 2.4235 -5.2199 27 1 12.3528 1.9785 -6.8554 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 3.2936 2.2720 2.0268 34 1 4.0868 0.6669 1.9304 35 1 5.6268 2.8737 2.1217 36 1 6.0880 1.5938 0.9559 37 1 5.9532 3.3419 -0.5895 38 1 4.8504 4.2958 0.4425 39 1 4.5676 1.5544 -2.3321 40 1 2.9993 4.0293 -5.3608 41 1 4.3235 5.0121 -5.1453 42 1 6.5619 2.4576 -3.8487 43 1 6.4719 4.1465 -4.4034 44 1 6.0950 3.3636 -6.7259 45 1 6.1851 1.6747 -6.1711 46 1 8.5013 2.0610 -5.3734 47 1 8.4106 3.7499 -5.9283 48 1 11.0981 1.8510 -9.2878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578148708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:22 Heat of formation + Delta-G solvation = -139.310804 kcal Electronic energy + Delta-G solvation = -24588.987297 eV Core-core repulsion = 21062.430020 eV Total energy + Delta-G solvation = -3526.557277 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37168 -39.85573 -37.56553 -37.03186 -35.17993 -34.70862 -33.34809 -32.12523 -30.04121 -29.02349 -28.42642 -26.39583 -23.92636 -23.65079 -22.16518 -21.71426 -21.41902 -20.92346 -18.85645 -18.56261 -17.96620 -17.60515 -16.93993 -16.52709 -16.31801 -16.13311 -15.87468 -15.54623 -15.27374 -14.80411 -14.64710 -14.45031 -14.30306 -13.96690 -13.75029 -13.67263 -13.31149 -13.01165 -12.98173 -12.83248 -12.42241 -12.38154 -12.32279 -12.15078 -12.06036 -11.77178 -11.69826 -11.58889 -11.54881 -11.39661 -11.23881 -11.07370 -10.72662 -10.63930 -10.07493 -9.68404 -8.25705 -6.28990 1.37915 1.39091 1.49651 1.51333 2.06637 2.39048 2.67554 3.09743 3.39990 3.52178 3.65297 3.80753 3.89214 4.02147 4.13639 4.16170 4.16516 4.26127 4.41003 4.45284 4.46993 4.49216 4.50974 4.58732 4.63852 4.80852 4.90230 4.94391 4.97635 5.01424 5.07500 5.11265 5.12427 5.13976 5.21288 5.24441 5.31525 5.47666 5.65813 5.72144 5.76970 6.04143 6.27348 6.34848 6.41731 6.49150 6.79920 7.14396 7.35284 8.91407 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.002882 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.390691 B = 9713.685377 C =10171.711345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.401 6.401 4 C 0.081 3.919 5 H 0.091 0.909 6 C -0.136 4.136 7 C -0.115 4.115 8 C -0.132 4.132 9 C 0.139 3.861 10 H 0.069 0.931 11 N -0.709 5.709 12 C 0.487 3.513 13 O -0.582 6.582 14 C 0.085 3.915 15 H 0.120 0.880 16 N -0.820 5.820 17 C -0.095 4.095 18 C -0.082 4.082 19 C -0.014 4.014 20 C -0.529 4.529 21 H 0.030 0.970 22 C -0.001 4.001 23 N -0.955 5.955 24 Si 0.952 3.048 25 H -0.271 1.271 26 H -0.242 1.242 27 H -0.284 1.284 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.414 0.586 40 H 0.347 0.653 41 H 0.346 0.654 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.023 0.977 47 H 0.011 0.989 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.175 -4.596 26.103 31.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.321 6.321 4 C 0.023 3.977 5 H 0.109 0.891 6 C -0.174 4.174 7 C -0.153 4.153 8 C -0.171 4.171 9 C 0.034 3.966 10 H 0.088 0.912 11 N -0.362 5.362 12 C 0.273 3.727 13 O -0.462 6.462 14 C -0.031 4.031 15 H 0.137 0.863 16 N -0.349 5.349 17 C -0.134 4.134 18 C -0.120 4.120 19 C -0.052 4.052 20 C -0.567 4.567 21 H 0.048 0.952 22 C -0.197 4.197 23 N -0.596 5.596 24 Si 0.776 3.224 25 H -0.197 1.197 26 H -0.165 1.165 27 H -0.210 1.210 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.251 0.749 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.041 0.959 47 H 0.029 0.971 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.068 -4.073 25.603 30.500 hybrid contribution 0.458 0.214 0.440 0.670 sum -15.610 -3.859 26.042 30.607 Atomic orbital electron populations 1.21773 0.93413 1.03291 1.02408 1.22708 0.96038 0.82749 1.01069 1.87941 1.20894 1.28165 1.95090 1.23254 0.81303 0.96769 0.96374 0.89133 1.22883 0.96810 1.02248 0.95458 1.22272 0.97043 0.98135 0.97828 1.22476 0.97108 0.99673 0.97806 1.21614 0.96956 0.97174 0.80885 0.91243 1.46172 1.66674 1.14879 1.08430 1.22444 0.76274 0.84579 0.89448 1.90665 1.48767 1.23637 1.83142 1.21648 0.96835 0.99194 0.85377 0.86276 1.59056 1.13664 1.09397 1.52796 1.21502 0.91648 1.01891 0.98312 1.21173 0.94898 1.00411 0.95522 1.19580 0.95181 0.95869 0.94528 1.21561 0.92467 1.44110 0.98569 0.95167 1.26076 1.01456 0.94822 0.97338 1.70087 1.17652 1.50298 1.21543 0.85627 0.77718 0.78556 0.80524 1.19650 1.16541 1.21027 0.92998 0.89171 0.92238 0.92626 0.91875 0.90882 0.89120 0.90101 0.90040 0.91505 0.91811 0.74935 0.83937 0.84024 0.89896 0.92717 0.92991 0.92893 0.95899 0.97068 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.05 0.61 6.50 71.98 0.47 1.08 16 3 O -0.40 -7.14 10.05 -148.98 -1.50 -8.64 16 4 C 0.08 1.17 3.05 31.67 0.10 1.27 16 5 H 0.09 0.97 7.41 -2.39 -0.02 0.96 16 6 C -0.14 -1.56 6.62 31.89 0.21 -1.34 16 7 C -0.12 -1.35 6.83 31.67 0.22 -1.13 16 8 C -0.13 -2.30 6.59 31.32 0.21 -2.09 16 9 C 0.14 2.67 3.00 45.72 0.14 2.81 16 10 H 0.07 1.80 7.49 -2.39 -0.02 1.78 16 11 N -0.71 -13.48 4.98 -439.10 -2.19 -15.67 16 12 C 0.49 12.22 7.06 87.66 0.62 12.84 16 13 O -0.58 -18.91 15.90 -3.04 -0.05 -18.95 16 14 C 0.09 2.09 3.15 44.17 0.14 2.23 16 15 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 16 N -0.82 -21.57 8.44 -171.80 -1.45 -23.02 16 17 C -0.10 -2.73 4.84 30.59 0.15 -2.58 16 18 C -0.08 -3.12 5.04 30.59 0.15 -2.97 16 19 C -0.01 -0.66 4.04 29.85 0.12 -0.54 16 20 C -0.53 -30.98 9.66 25.60 0.25 -30.73 16 21 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 22 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 23 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 24 Si 0.95 44.65 27.47 68.60 1.88 46.53 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 28 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.60 8.11 -2.39 -0.02 0.58 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 1.29 7.92 -2.39 -0.02 1.27 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.41 5.64 8.36 -92.71 -0.77 4.86 16 40 H 0.35 8.06 9.06 -89.70 -0.81 7.25 16 41 H 0.35 9.59 8.58 -89.70 -0.77 8.82 16 42 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.05 2.14 7.75 -2.38 -0.02 2.12 16 45 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.02 1.01 7.20 -2.38 -0.02 1.00 16 47 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 48 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -74.10 385.29 -0.50 -74.60 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -1.47 Total: 27.45 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: 3.97 Total: -21.71 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -3.34 Total: -99.27 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -1.55 Total: -27.59 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -74.10 -0.50 -74.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578148708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.714 kcal (2) G-P(sol) polarization free energy of solvation -74.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds