Wall clock time and date at job start Tue Mar 31 2020 07:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47361 * 2 1 4 4 C 1.42902 * 113.99884 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46949 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47176 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47167 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00119 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00034 * 180.27721 * 7 6 5 10 10 C 1.46500 * 120.00114 * 179.73052 * 9 7 6 11 11 C 1.52998 * 109.47233 * 175.12819 * 10 9 7 12 12 N 1.46504 * 110.01384 * 303.89845 * 11 10 9 13 13 C 1.36935 * 120.00238 * 301.46100 * 12 11 10 14 14 H 1.08004 * 119.99665 * 354.60705 * 13 12 11 15 15 C 1.38803 * 120.00122 * 174.60616 * 13 12 11 16 16 N 1.31615 * 120.00137 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00108 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46871 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47367 * 120.00179 * 17 15 13 20 20 H 1.48504 * 109.47436 * 240.00395 * 17 15 13 21 21 C 1.54268 * 110.03472 * 182.45664 * 11 10 9 22 22 C 1.54883 * 104.19573 * 217.10494 * 21 11 10 23 23 C 1.54893 * 102.75251 * 37.94262 * 22 21 11 24 24 C 1.53881 * 110.03276 * 65.28891 * 11 10 9 25 25 H 1.08998 * 109.47034 * 59.99778 * 1 2 3 26 26 H 1.09004 * 109.47435 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46594 * 299.99584 * 1 2 3 28 28 H 1.09001 * 109.46605 * 239.99859 * 2 1 3 29 29 H 1.08997 * 109.47463 * 120.00541 * 2 1 3 30 30 H 1.08993 * 109.47308 * 60.00475 * 4 3 2 31 31 H 1.08998 * 109.46973 * 299.99904 * 4 3 2 32 32 H 1.09006 * 109.47495 * 59.99963 * 5 4 3 33 33 H 1.08997 * 109.47110 * 300.00207 * 5 4 3 34 34 H 1.09002 * 109.47291 * 60.00252 * 6 5 4 35 35 H 1.08997 * 109.47409 * 300.00194 * 6 5 4 36 36 H 0.97006 * 119.99722 * 359.72424 * 9 7 6 37 37 H 1.09006 * 109.46355 * 295.12188 * 10 9 7 38 38 H 1.08991 * 109.47267 * 55.12455 * 10 9 7 39 39 H 0.97002 * 119.99847 * 121.46211 * 12 11 10 40 40 H 0.97010 * 120.00288 * 179.97438 * 16 15 13 41 41 H 1.08996 * 110.48206 * 335.78366 * 21 11 10 42 42 H 1.09003 * 110.48427 * 98.42263 * 21 11 10 43 43 H 1.08999 * 110.75451 * 279.62307 * 22 21 11 44 44 H 1.08998 * 110.75356 * 156.25739 * 22 21 11 45 45 H 1.08993 * 110.48645 * 203.37957 * 23 22 21 46 46 H 1.08995 * 110.48639 * 80.73189 * 23 22 21 47 47 H 1.08999 * 110.03041 * 238.56963 * 24 11 10 48 48 H 1.08998 * 110.03252 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9382 0.0001 6 6 5.3507 3.0590 0.0001 7 6 5.7393 4.5150 0.0002 8 8 4.8809 5.3718 0.0007 9 7 7.0408 4.8652 -0.0054 10 6 7.4186 6.2806 -0.0113 11 6 8.9392 6.4031 0.1055 12 7 9.4075 5.7070 1.3065 13 6 8.9340 6.0726 2.5383 14 1 8.2833 6.9292 2.6342 15 6 9.2903 5.3423 3.6636 16 7 10.0837 4.2986 3.5468 17 14 8.6438 5.8406 5.3438 18 1 7.7772 7.0385 5.2054 19 1 7.8545 4.7234 5.9219 20 1 9.7853 6.1557 6.2400 21 6 9.3468 7.8899 0.1625 22 6 10.6667 7.9531 -0.6454 23 6 10.4071 6.9572 -1.8029 24 6 9.6134 5.8101 -1.1441 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8932 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8333 0.9767 -0.8908 31 1 3.8340 0.9763 0.8892 32 1 3.4232 3.4213 0.8906 33 1 3.4223 3.4223 -0.8894 34 1 5.7534 2.5759 -0.8901 35 1 5.7535 2.5750 0.8898 36 1 7.7274 4.1799 -0.0055 37 1 7.0875 6.7410 -0.9423 38 1 6.9475 6.7859 0.8317 39 1 10.0530 4.9871 1.2292 40 1 10.3331 3.7884 4.3333 41 1 8.5837 8.5127 -0.3042 42 1 9.5154 8.1999 1.1938 43 1 11.5088 7.6258 -0.0356 44 1 10.8356 8.9584 -1.0313 45 1 11.3496 6.5866 -2.2059 46 1 9.8153 7.4294 -2.5869 47 1 10.2897 5.0049 -0.8569 48 1 8.8573 5.4346 -1.8336 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753660381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:45 Heat of formation + Delta-G solvation = -100.295810 kcal Electronic energy + Delta-G solvation = -24749.555533 eV Core-core repulsion = 21224.690073 eV Total energy + Delta-G solvation = -3524.865460 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.46912 -38.35169 -37.95672 -34.11038 -33.70961 -33.28452 -31.21343 -30.60400 -28.31037 -28.11125 -26.54136 -24.28524 -23.17200 -22.96618 -21.64298 -20.40555 -19.57455 -18.56421 -17.13917 -16.93743 -16.53515 -16.30938 -15.73200 -15.28552 -14.99944 -14.72026 -14.37116 -14.11663 -13.98407 -13.33843 -13.24902 -13.04250 -12.82015 -12.60894 -12.49219 -11.90790 -11.83171 -11.66398 -11.52942 -11.44726 -11.09450 -10.99736 -10.79516 -10.77520 -10.73687 -10.64311 -10.50456 -10.23213 -10.14601 -9.84568 -9.71064 -9.65740 -9.37539 -8.91995 -8.37011 -7.01940 -5.82146 -3.10802 3.15071 3.39808 3.40795 3.48730 3.49886 3.92818 4.56110 4.81726 4.89735 4.98379 5.00943 5.10400 5.11916 5.13118 5.21558 5.23340 5.34005 5.43582 5.53165 5.54138 5.57316 5.67887 5.68519 5.75252 5.81041 5.88144 5.93691 5.94705 6.08254 6.17115 6.19297 6.26121 6.30532 6.33989 6.44440 6.56340 6.61887 6.76890 6.82714 7.01311 7.10442 7.14225 7.70719 8.12593 8.36623 8.78278 9.48694 10.02518 10.37917 11.39957 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.003578 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.290775 B = 7823.976833 C = 9391.978012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.389 6.389 4 C 0.063 3.937 5 C -0.101 4.101 6 C -0.138 4.138 7 C 0.510 3.490 8 O -0.557 6.557 9 N -0.701 5.701 10 C 0.120 3.880 11 C 0.188 3.812 12 N -0.711 5.711 13 C -0.230 4.230 14 H 0.070 0.930 15 C -0.009 4.009 16 N -0.932 5.932 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.293 1.293 20 H -0.293 1.293 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.125 4.125 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.402 0.598 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.384 0.616 40 H 0.253 0.747 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 -5.755 -11.398 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.014 4.014 5 C -0.139 4.139 6 C -0.178 4.178 7 C 0.296 3.704 8 O -0.436 6.436 9 N -0.350 5.350 10 C -0.006 4.006 11 C 0.096 3.904 12 N -0.352 5.352 13 C -0.361 4.361 14 H 0.088 0.912 15 C -0.205 4.205 16 N -0.580 5.580 17 Si 0.732 3.268 18 H -0.205 1.205 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.172 4.172 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.164 4.164 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.236 0.764 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.218 0.782 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.422 -4.923 -11.236 14.880 hybrid contribution 0.472 -0.646 1.140 1.393 sum -7.950 -5.569 -10.096 14.005 Atomic orbital electron populations 1.21745 0.93880 1.02065 1.03198 1.22441 0.95545 0.84074 0.99968 1.87896 1.21439 1.26132 1.95421 1.22537 0.80958 0.97790 1.00101 1.21184 0.93780 0.94130 1.04764 1.21520 0.97001 0.94851 1.04463 1.20409 0.82795 0.90852 0.76345 1.90660 1.49721 1.52341 1.50912 1.45738 1.06731 1.09259 1.73266 1.21853 0.97295 0.81307 1.00148 1.20469 0.90230 0.92119 0.87557 1.42551 1.51074 1.41099 1.00479 1.19136 1.23636 1.08991 0.84338 0.91232 1.24670 1.00412 0.97693 0.97753 1.69658 1.39532 1.20236 1.28618 0.86218 0.78040 0.77694 0.84892 1.20548 1.21974 1.21975 1.22825 0.96010 0.97313 1.01065 1.22385 0.98691 0.97855 0.96532 1.22301 0.99264 0.96625 0.97645 1.22429 0.99048 0.98254 0.96621 0.91874 0.91245 0.91812 0.93557 0.93456 0.93396 0.93182 0.90337 0.90556 0.89241 0.88601 0.76365 0.93283 0.91577 0.78154 0.93670 0.92932 0.90315 0.91415 0.92742 0.92382 0.92301 0.91324 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.53 6.66 37.16 0.25 0.78 16 3 O -0.39 -4.95 10.34 -35.23 -0.36 -5.31 16 4 C 0.06 0.72 5.94 37.16 0.22 0.94 16 5 C -0.10 -1.36 4.87 -26.74 -0.13 -1.49 16 6 C -0.14 -1.83 5.70 -27.89 -0.16 -1.99 16 7 C 0.51 8.96 7.83 -10.98 -0.09 8.88 16 8 O -0.56 -11.75 15.98 5.56 0.09 -11.67 16 9 N -0.70 -12.17 5.10 -60.29 -0.31 -12.47 16 10 C 0.12 2.22 3.99 -4.04 -0.02 2.20 16 11 C 0.19 3.38 0.68 -130.70 -0.09 3.29 16 12 N -0.71 -15.75 4.76 -46.19 -0.22 -15.97 16 13 C -0.23 -5.90 8.39 -15.06 -0.13 -6.03 16 14 H 0.07 1.82 7.23 -52.48 -0.38 1.44 16 15 C -0.01 -0.26 5.50 -17.44 -0.10 -0.35 16 16 N -0.93 -26.50 13.06 55.49 0.72 -25.77 16 17 Si 0.90 22.13 29.55 -169.99 -5.02 17.10 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 C -0.13 -2.26 5.94 -25.07 -0.15 -2.41 16 22 C -0.12 -1.74 6.91 -24.74 -0.17 -1.91 16 23 C -0.12 -1.61 6.83 -25.07 -0.17 -1.79 16 24 C -0.13 -1.88 5.80 -25.61 -0.15 -2.03 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.40 6.60 7.99 -40.82 -0.33 6.28 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.42 7.49 -51.93 -0.39 1.03 16 39 H 0.38 9.11 7.28 -40.82 -0.30 8.81 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 42 H 0.08 1.55 7.12 -51.93 -0.37 1.18 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.06 7.44 -51.93 -0.39 0.68 16 48 H 0.06 0.84 7.54 -51.93 -0.39 0.45 16 LS Contribution 383.88 15.07 5.79 5.79 Total: -1.00 -30.47 383.88 -8.65 -39.12 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -8.84 Total: 11.92 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.49 Total: -2.74 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.20 Total: -54.21 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.28 Total: -16.98 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.47 -8.65 -39.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753660381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.173 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds