Wall clock time and date at job start Tue Mar 31 2020 07:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00160 * 2 1 4 4 C 1.50694 * 109.47115 * 270.00206 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.34780 * 120.00033 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00111 * 180.02562 * 12 2 1 14 14 C 1.50707 * 120.00018 * 359.97438 * 12 2 1 15 15 H 1.09005 * 115.54302 * 34.28346 * 14 12 2 16 16 C 1.52995 * 117.49983 * 248.61169 * 14 12 2 17 17 C 1.52991 * 117.49916 * 179.97438 * 14 12 2 18 18 H 1.08998 * 117.50184 * 0.02562 * 17 14 12 19 19 C 1.50707 * 117.49892 * 214.98225 * 17 14 12 20 20 C 1.33346 * 125.19087 * 120.00027 * 19 17 14 21 21 C 1.38468 * 114.93024 * 179.97438 * 20 19 17 22 22 C 1.33500 * 114.88507 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 125.20812 * 180.02562 * 22 21 20 24 24 S 1.75881 * 109.58238 * 359.76140 * 22 21 20 25 25 H 1.08996 * 109.47419 * 90.00053 * 1 2 3 26 26 H 1.09004 * 109.47352 * 209.99756 * 1 2 3 27 27 H 1.08995 * 109.47003 * 329.99670 * 1 2 3 28 28 H 1.09007 * 109.47078 * 149.99845 * 3 2 1 29 29 H 1.09003 * 109.46733 * 30.00568 * 3 2 1 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09002 * 117.49993 * 359.97438 * 16 14 12 32 32 H 1.09003 * 117.49610 * 145.01885 * 16 14 12 33 33 H 1.08002 * 122.53432 * 359.97438 * 20 19 17 34 34 H 1.08007 * 122.55772 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6730 8 14 3.4388 3.4163 -3.4339 9 1 4.7337 2.8587 -3.9002 10 1 2.3435 2.9195 -4.3049 11 1 3.4871 4.8992 -3.4965 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3853 -2.4724 -0.0005 15 1 0.4464 -2.4730 -0.5542 16 6 1.4612 -3.3319 1.2629 17 6 2.2074 -3.7627 -0.0017 18 1 3.2932 -3.6677 -0.0021 19 6 1.6570 -4.9377 -0.7683 20 6 2.2657 -5.5428 -1.7888 21 6 1.5670 -6.6041 -2.3389 22 6 0.3901 -6.8606 -1.7633 23 17 -0.7009 -8.1254 -2.2363 24 16 0.1176 -5.7257 -0.4476 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 3.1499 1.1383 0.5139 29 1 1.6084 2.0283 0.5139 30 1 4.0318 4.4430 -0.8503 31 1 2.0565 -2.9537 2.0940 32 1 0.5722 -3.8984 1.5403 33 1 3.2307 -5.2287 -2.1583 34 1 1.9457 -7.1811 -3.1698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278429939.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:53 Heat of formation + Delta-G solvation = 18.049558 kcal Electronic energy + Delta-G solvation = -18849.750290 eV Core-core repulsion = 15708.260760 eV Total energy + Delta-G solvation = -3141.489530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 299.049 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63745 -38.23296 -37.02742 -36.07197 -34.76523 -32.59133 -29.58536 -28.00666 -25.98580 -24.75893 -24.05885 -22.13993 -21.65760 -19.76144 -18.39601 -17.72045 -16.63825 -16.49099 -15.80878 -15.45050 -14.65231 -14.45879 -14.03056 -13.97948 -13.60139 -13.31597 -12.87489 -12.49017 -12.26715 -12.15517 -12.11397 -12.01152 -11.83497 -11.27171 -11.26408 -10.94642 -10.89785 -10.68673 -10.52097 -10.47077 -10.16068 -9.65064 -9.04829 -8.76766 -8.57857 -8.44413 -7.67938 -6.05720 -4.10391 0.55082 0.84713 1.57827 1.99141 2.36163 3.09315 3.30823 3.36742 3.39496 3.79180 3.99331 4.39146 4.49133 4.72198 4.86786 5.07152 5.14367 5.22899 5.26734 5.32464 5.54027 5.65667 5.69692 5.90085 5.95788 5.98722 6.03133 6.15324 6.19021 7.01935 7.40195 7.50999 7.90466 8.21401 8.36850 8.87417 9.04517 9.54705 11.02422 Molecular weight = 299.05amu Principal moments of inertia in cm(-1) A = 0.023817 B = 0.003139 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.352110 B = 8916.624142 C = 9371.912300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.597 5.597 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 C 0.534 3.466 13 O -0.540 6.540 14 C -0.165 4.165 15 H 0.122 0.878 16 C -0.146 4.146 17 C -0.064 4.064 18 H 0.141 0.859 19 C -0.125 4.125 20 C -0.132 4.132 21 C -0.109 4.109 22 C -0.160 4.160 23 Cl -0.020 7.020 24 S 0.148 5.852 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.152 0.848 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.320 -20.643 1.260 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.328 5.328 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.211 1.211 12 C 0.320 3.680 13 O -0.418 6.418 14 C -0.187 4.187 15 H 0.140 0.860 16 C -0.184 4.184 17 C -0.084 4.084 18 H 0.159 0.841 19 C -0.243 4.243 20 C -0.162 4.162 21 C -0.142 4.142 22 C -0.303 4.303 23 Cl 0.008 6.992 24 S 0.411 5.589 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.169 0.831 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.873 -20.345 2.293 22.730 hybrid contribution 1.030 0.062 -2.243 2.469 sum -8.843 -20.283 0.050 22.127 Atomic orbital electron populations 1.21640 0.81306 1.01736 1.01209 1.48054 1.06288 1.07564 1.70879 1.19334 0.92566 0.77879 0.97595 1.21431 1.36509 1.06314 0.92291 0.92460 1.24939 0.95336 0.96354 0.97484 1.69933 1.38346 1.14418 1.30739 0.86492 0.78792 0.77548 0.84564 1.20517 1.19907 1.21116 1.19238 0.87335 0.83918 0.77527 1.90669 1.13652 1.86977 1.50462 1.22569 1.01718 0.90965 1.03492 0.85991 1.23103 1.02340 1.01420 0.91534 1.20535 0.99772 0.89556 0.98569 0.84140 1.23915 0.97664 1.01281 1.01455 1.19973 1.02592 0.96573 0.97036 1.20188 0.93141 0.98983 1.01877 1.25194 0.98379 1.01166 1.05561 1.98359 1.61791 1.48245 1.90788 1.84279 1.19304 1.24796 1.30540 0.93212 0.92414 0.91298 0.93805 0.94870 0.92694 0.87035 0.88131 0.83060 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.05 59.85 0.60 1.94 16 2 N -0.60 -12.59 2.86 -182.96 -0.52 -13.11 16 3 C 0.25 6.40 5.20 -5.20 -0.03 6.38 16 4 C -0.53 -15.00 9.39 -34.44 -0.32 -15.32 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.53 10.92 7.46 -10.98 -0.08 10.84 16 13 O -0.54 -13.30 15.84 5.56 0.09 -13.21 16 14 C -0.17 -2.42 4.50 -91.78 -0.41 -2.84 16 15 H 0.12 1.60 7.26 -51.93 -0.38 1.22 16 16 C -0.15 -1.71 9.75 -26.72 -0.26 -1.98 16 17 C -0.06 -0.84 5.73 -91.76 -0.53 -1.36 16 18 H 0.14 2.02 7.67 -51.93 -0.40 1.62 16 19 C -0.13 -1.46 6.14 -36.01 -0.22 -1.68 16 20 C -0.13 -1.46 10.05 -41.21 -0.41 -1.87 16 21 C -0.11 -1.10 10.13 -41.15 -0.42 -1.52 16 22 C -0.16 -1.65 7.10 29.07 0.21 -1.45 16 23 Cl -0.02 -0.19 29.29 -51.86 -1.52 -1.71 16 24 S 0.15 1.51 22.16 -107.50 -2.38 -0.88 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.71 6.64 -51.93 -0.34 0.36 16 27 H 0.07 1.03 7.89 -51.93 -0.41 0.63 16 28 H 0.04 1.28 7.42 -51.92 -0.39 0.90 16 29 H 0.03 0.87 7.89 -51.93 -0.41 0.46 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.10 0.95 7.26 -51.93 -0.38 0.58 16 33 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -32.35 325.79 -9.62 -41.97 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -3.94 Total: -1.79 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.97 Total: -7.21 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.21 Total: -38.97 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.38 Total: -0.88 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.35 -9.62 -41.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278429939.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.019 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds