Wall clock time and date at job start Tue Mar 31 2020 07:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37104 * 120.00146 * 2 1 4 4 H 1.07996 * 120.00149 * 201.69771 * 3 2 1 5 5 C 1.38951 * 119.99682 * 21.70099 * 3 2 1 6 6 N 1.31415 * 120.00177 * 11.33794 * 5 3 2 7 7 Si 1.86799 * 119.99567 * 191.34614 * 5 3 2 8 8 H 1.48498 * 109.47223 * 85.07185 * 7 5 3 9 9 H 1.48507 * 109.46744 * 205.06801 * 7 5 3 10 10 H 1.48495 * 109.47278 * 325.06682 * 7 5 3 11 11 C 1.34774 * 120.00236 * 179.97438 * 2 1 3 12 12 O 1.21296 * 120.00398 * 180.02562 * 11 2 1 13 13 C 1.50703 * 119.99967 * 0.02562 * 11 2 1 14 14 C 1.50692 * 109.47488 * 179.97438 * 13 11 2 15 15 C 1.38258 * 119.93024 * 270.28107 * 14 13 11 16 16 C 1.38235 * 120.14233 * 180.30899 * 15 14 13 17 17 C 1.38542 * 120.02837 * 359.44507 * 16 15 14 18 18 C 1.39260 * 119.83183 * 0.24804 * 17 16 15 19 19 C 1.38237 * 119.93088 * 89.99352 * 14 13 11 20 20 O 1.36506 * 108.64056 * 180.02562 * 18 17 16 21 21 C 1.43984 * 105.48222 * 342.71710 * 20 18 17 22 22 F 1.39900 * 110.57137 * 268.55693 * 21 20 18 23 23 F 1.39904 * 110.69659 * 145.74528 * 21 20 18 24 24 O 1.36509 * 131.52783 * 180.29406 * 17 16 15 25 25 H 1.08997 * 109.47458 * 272.17999 * 1 2 3 26 26 H 1.09004 * 109.47201 * 32.18033 * 1 2 3 27 27 H 1.09001 * 109.46839 * 152.17921 * 1 2 3 28 28 H 0.96995 * 119.99549 * 179.97438 * 6 5 3 29 29 H 1.09007 * 109.47246 * 59.99226 * 13 11 2 30 30 H 1.09006 * 109.46778 * 300.00033 * 13 11 2 31 31 H 1.08001 * 119.92592 * 0.02562 * 15 14 13 32 32 H 1.08004 * 119.97962 * 179.71359 * 16 15 14 33 33 H 1.08000 * 119.98461 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1731 1.2205 -0.3458 5 6 1.5296 2.3480 0.4450 6 7 0.3755 2.2778 1.0696 7 14 2.3353 4.0082 0.1551 8 1 1.9737 4.5046 -1.1969 9 1 1.8624 4.9735 1.1797 10 1 3.8103 3.8663 0.2522 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3646 -3.6177 0.0005 15 6 2.8173 -4.1382 -1.1977 16 6 3.7107 -5.1931 -1.2028 17 6 4.1636 -5.7240 -0.0059 18 6 3.7125 -5.1956 1.2010 19 6 2.8129 -4.1419 1.1985 20 8 4.2993 -5.8824 2.2244 21 6 4.7960 -7.0990 1.6358 22 9 3.8370 -8.1139 1.7219 23 9 5.9871 -7.4963 2.2528 24 8 5.0332 -6.7418 0.2612 25 1 -0.3634 0.0391 1.0269 26 1 -0.3634 0.8698 -0.5473 27 1 -0.3633 -0.9089 -0.4796 28 1 -0.0577 3.0881 1.3805 29 1 0.7590 -2.5302 -0.8897 30 1 0.7584 -2.5298 0.8903 31 1 2.4687 -3.7227 -2.1316 32 1 4.0591 -5.6007 -2.1404 33 1 2.4615 -3.7301 2.1330 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593441201.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:54 Heat of formation + Delta-G solvation = -161.457914 kcal Electronic energy + Delta-G solvation = -23725.691374 eV Core-core repulsion = 19581.868265 eV Total energy + Delta-G solvation = -4143.823109 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.080 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.60782 -48.06779 -42.25906 -39.03290 -37.59920 -37.03358 -34.71838 -32.19122 -31.46191 -30.47763 -27.58625 -26.15086 -25.24592 -24.28824 -23.28134 -22.49919 -19.44737 -19.33059 -18.88457 -18.46274 -17.35555 -16.93311 -16.12831 -15.92694 -15.63294 -15.01767 -14.78434 -14.60499 -14.54449 -14.31324 -14.21716 -14.08554 -13.95504 -13.90335 -13.51945 -13.25616 -12.52339 -12.20923 -12.04551 -11.68169 -11.49324 -11.26894 -11.22603 -11.05177 -10.89462 -10.39470 -10.27948 -9.07168 -8.95423 -8.61464 -8.26759 -7.75272 -6.35984 -3.92559 0.94841 1.14071 1.56649 2.15602 3.13735 3.22665 3.27448 3.45034 3.75806 3.81449 3.89797 4.11159 4.21504 4.68169 4.75011 4.84709 4.99965 5.08393 5.16965 5.31544 5.64781 5.77184 5.83431 5.87088 5.96166 6.08699 6.14426 6.30097 6.54748 6.80573 6.82884 7.17855 7.52411 8.06717 8.42640 9.13585 9.36679 9.91096 10.67299 Molecular weight = 299.08amu Principal moments of inertia in cm(-1) A = 0.032166 B = 0.003201 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.265097 B = 8744.170659 C = 8915.917348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.445 5.445 3 C -0.306 4.306 4 H 0.099 0.901 5 C 0.031 3.969 6 N -0.884 5.884 7 Si 0.927 3.073 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.445 3.555 12 O -0.583 6.583 13 C -0.097 4.097 14 C -0.020 4.020 15 C -0.087 4.087 16 C -0.079 4.079 17 C 0.010 3.990 18 C 0.025 3.975 19 C -0.068 4.068 20 O -0.287 6.287 21 C 0.568 3.432 22 F -0.158 7.158 23 F -0.121 7.121 24 O -0.290 6.290 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.027 0.973 28 H 0.268 0.732 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.027 -15.184 -2.282 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.164 5.164 3 C -0.434 4.434 4 H 0.117 0.883 5 C -0.172 4.172 6 N -0.523 5.523 7 Si 0.754 3.246 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.233 3.767 12 O -0.468 6.468 13 C -0.137 4.137 14 C -0.021 4.021 15 C -0.105 4.105 16 C -0.098 4.098 17 C -0.033 4.033 18 C -0.018 4.018 19 C -0.086 4.086 20 O -0.207 6.207 21 C 0.459 3.541 22 F -0.140 7.140 23 F -0.102 7.102 24 O -0.209 6.209 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.621 -15.123 -2.064 15.276 hybrid contribution 0.403 0.543 0.315 0.746 sum 1.024 -14.580 -1.749 14.721 Atomic orbital electron populations 1.21553 0.81023 0.98929 1.01835 1.43599 1.05581 1.04686 1.62548 1.19676 0.99161 0.83617 1.40949 0.88287 1.25334 0.96469 1.00069 0.95373 1.69992 1.16783 1.29254 1.36288 0.85925 0.79652 0.81074 0.77975 1.20289 1.20939 1.19407 1.19788 0.88038 0.84303 0.84605 1.90563 1.13728 1.86918 1.55571 1.20685 0.96835 0.91697 1.04491 1.19320 0.96620 0.94598 0.91574 1.20906 0.96412 0.94507 0.98690 1.20023 0.97700 0.97469 0.94596 1.19498 0.95287 0.92772 0.95728 1.19445 0.99624 0.99055 0.83697 1.19964 0.94784 0.93924 0.99965 1.87613 1.71678 1.29272 1.32117 1.21909 0.75058 0.79005 0.78109 1.93250 1.64180 1.61162 1.95449 1.93230 1.44807 1.90389 1.81808 1.87581 1.55726 1.51047 1.26592 0.92340 0.91086 0.95445 0.92206 0.88644 0.88701 0.83808 0.84111 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.28 8.52 59.84 0.51 2.79 16 2 N -0.45 -10.76 3.02 -122.19 -0.37 -11.13 16 3 C -0.31 -8.26 9.31 -14.93 -0.14 -8.40 16 4 H 0.10 2.81 7.39 -52.49 -0.39 2.43 16 5 C 0.03 0.78 5.12 -17.47 -0.09 0.70 16 6 N -0.88 -22.76 10.56 55.50 0.59 -22.18 16 7 Si 0.93 20.31 29.57 -169.99 -5.03 15.28 16 8 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 11 C 0.45 10.00 7.62 -10.98 -0.08 9.91 16 12 O -0.58 -15.32 15.72 5.54 0.09 -15.24 16 13 C -0.10 -1.54 4.35 -29.04 -0.13 -1.66 16 14 C -0.02 -0.31 4.37 -104.62 -0.46 -0.77 16 15 C -0.09 -1.16 9.69 -39.57 -0.38 -1.54 16 16 C -0.08 -1.01 10.06 -39.47 -0.40 -1.41 16 17 C 0.01 0.15 7.15 -39.09 -0.28 -0.13 16 18 C 0.03 0.39 7.15 -39.09 -0.28 0.11 16 19 C -0.07 -1.05 9.71 -39.47 -0.38 -1.43 16 20 O -0.29 -4.43 11.35 -45.71 -0.52 -4.95 16 21 C 0.57 7.87 3.69 101.05 0.37 8.25 16 22 F -0.16 -2.06 17.57 2.25 0.04 -2.02 16 23 F -0.12 -1.57 17.57 2.25 0.04 -1.53 16 24 O -0.29 -4.21 11.35 -45.72 -0.52 -4.72 16 25 H 0.06 1.26 7.56 -51.93 -0.39 0.87 16 26 H 0.07 1.57 7.00 -51.93 -0.36 1.20 16 27 H 0.03 0.44 6.36 -51.93 -0.33 0.11 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.10 1.25 7.35 -51.93 -0.38 0.86 16 30 H 0.09 1.34 8.05 -51.93 -0.42 0.93 16 31 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 33 H 0.14 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 300.95 15.07 4.54 4.54 Total: -1.00 -30.48 300.95 -5.56 -36.04 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -2.68 Total: -0.50 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -1.74 Total: 6.42 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.22 Total: -33.31 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.95 Total: -24.91 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.08 Total: -3.55 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.48 -5.56 -36.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593441201.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.420 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds