Wall clock time and date at job start Tue Mar 31 2020 07:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37104 * 120.00146 * 2 1 4 4 H 1.07996 * 120.00149 * 201.69771 * 3 2 1 5 5 C 1.38951 * 119.99682 * 21.70099 * 3 2 1 6 6 N 1.31415 * 120.00177 * 11.33794 * 5 3 2 7 7 Si 1.86799 * 119.99567 * 191.34614 * 5 3 2 8 8 H 1.48498 * 109.47223 * 85.07185 * 7 5 3 9 9 H 1.48507 * 109.46744 * 205.06801 * 7 5 3 10 10 H 1.48495 * 109.47278 * 325.06682 * 7 5 3 11 11 C 1.34774 * 120.00236 * 179.97438 * 2 1 3 12 12 O 1.21296 * 120.00398 * 180.02562 * 11 2 1 13 13 C 1.50703 * 119.99967 * 0.02562 * 11 2 1 14 14 C 1.50692 * 109.47488 * 179.97438 * 13 11 2 15 15 C 1.38258 * 119.93024 * 270.28107 * 14 13 11 16 16 C 1.38235 * 120.14233 * 180.30899 * 15 14 13 17 17 C 1.38542 * 120.02837 * 359.44507 * 16 15 14 18 18 C 1.39260 * 119.83183 * 0.24804 * 17 16 15 19 19 C 1.38237 * 119.93088 * 89.99352 * 14 13 11 20 20 O 1.36506 * 108.64056 * 180.02562 * 18 17 16 21 21 C 1.43984 * 105.48222 * 342.71710 * 20 18 17 22 22 F 1.39900 * 110.57137 * 268.55693 * 21 20 18 23 23 F 1.39904 * 110.69659 * 145.74528 * 21 20 18 24 24 O 1.36509 * 131.52783 * 180.29406 * 17 16 15 25 25 H 1.08997 * 109.47458 * 272.17999 * 1 2 3 26 26 H 1.09004 * 109.47201 * 32.18033 * 1 2 3 27 27 H 1.09001 * 109.46839 * 152.17921 * 1 2 3 28 28 H 0.96995 * 119.99549 * 179.97438 * 6 5 3 29 29 H 1.09007 * 109.47246 * 59.99226 * 13 11 2 30 30 H 1.09006 * 109.46778 * 300.00033 * 13 11 2 31 31 H 1.08001 * 119.92592 * 0.02562 * 15 14 13 32 32 H 1.08004 * 119.97962 * 179.71359 * 16 15 14 33 33 H 1.08000 * 119.98461 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1731 1.2205 -0.3458 5 6 1.5296 2.3480 0.4450 6 7 0.3755 2.2778 1.0696 7 14 2.3353 4.0082 0.1551 8 1 1.9737 4.5046 -1.1969 9 1 1.8624 4.9735 1.1797 10 1 3.8103 3.8663 0.2522 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3646 -3.6177 0.0005 15 6 2.8173 -4.1382 -1.1977 16 6 3.7107 -5.1931 -1.2028 17 6 4.1636 -5.7240 -0.0059 18 6 3.7125 -5.1956 1.2010 19 6 2.8129 -4.1419 1.1985 20 8 4.2993 -5.8824 2.2244 21 6 4.7960 -7.0990 1.6358 22 9 3.8370 -8.1139 1.7219 23 9 5.9871 -7.4963 2.2528 24 8 5.0332 -6.7418 0.2612 25 1 -0.3634 0.0391 1.0269 26 1 -0.3634 0.8698 -0.5473 27 1 -0.3633 -0.9089 -0.4796 28 1 -0.0577 3.0881 1.3805 29 1 0.7590 -2.5302 -0.8897 30 1 0.7584 -2.5298 0.8903 31 1 2.4687 -3.7227 -2.1316 32 1 4.0591 -5.6007 -2.1404 33 1 2.4615 -3.7301 2.1330 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593441201.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:53 Heat of formation + Delta-G solvation = -180.171550 kcal Electronic energy + Delta-G solvation = -23726.502858 eV Core-core repulsion = 19581.868265 eV Total energy + Delta-G solvation = -4144.634593 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.080 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.67540 -49.12964 -43.36961 -40.57943 -38.93549 -38.16504 -36.57062 -33.78952 -33.00912 -31.59089 -29.00344 -27.79138 -26.43349 -25.96113 -24.39102 -23.71309 -20.97439 -20.43689 -19.97358 -19.67821 -18.83058 -18.50591 -17.82291 -17.06960 -16.79740 -16.51908 -16.09583 -15.91400 -15.84718 -15.78610 -15.39750 -15.27156 -15.16891 -15.06529 -14.73570 -14.39338 -14.19663 -13.77869 -13.36919 -13.19613 -12.96319 -12.81961 -12.68938 -12.59954 -12.20888 -12.17028 -12.10769 -10.97134 -10.37807 -10.00718 -9.64418 -9.50517 -8.28906 -5.93508 -0.17978 0.06082 0.47250 1.05523 1.39403 1.43207 1.53862 2.09209 2.25241 2.38674 2.67188 2.80919 3.12718 3.13958 3.23555 3.59137 3.67846 3.83075 4.13809 4.19628 4.25005 4.51861 4.66454 4.73294 4.81522 4.91324 4.99890 5.09272 5.14459 5.43411 5.48969 5.50316 5.72302 6.14042 6.52973 7.22194 7.54501 8.09337 8.71630 Molecular weight = 299.08amu Principal moments of inertia in cm(-1) A = 0.032166 B = 0.003201 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.265097 B = 8744.170659 C = 8915.917348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.465 5.465 3 C -0.341 4.341 4 H 0.070 0.930 5 C -0.002 4.002 6 N -0.897 5.897 7 Si 0.984 3.016 8 H -0.265 1.265 9 H -0.275 1.275 10 H -0.279 1.279 11 C 0.440 3.560 12 O -0.629 6.629 13 C -0.083 4.083 14 C -0.037 4.037 15 C -0.082 4.082 16 C -0.072 4.072 17 C 0.000 4.000 18 C 0.004 3.996 19 C -0.080 4.080 20 O -0.301 6.301 21 C 0.571 3.429 22 F -0.153 7.153 23 F -0.117 7.117 24 O -0.292 6.292 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.272 0.728 29 H 0.134 0.866 30 H 0.114 0.886 31 H 0.172 0.828 32 H 0.175 0.825 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 -15.860 -3.474 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.184 5.184 3 C -0.470 4.470 4 H 0.088 0.912 5 C -0.203 4.203 6 N -0.536 5.536 7 Si 0.808 3.192 8 H -0.190 1.190 9 H -0.200 1.200 10 H -0.204 1.204 11 C 0.230 3.770 12 O -0.517 6.517 13 C -0.122 4.122 14 C -0.038 4.038 15 C -0.100 4.100 16 C -0.090 4.090 17 C -0.043 4.043 18 C -0.039 4.039 19 C -0.099 4.099 20 O -0.221 6.221 21 C 0.462 3.538 22 F -0.135 7.135 23 F -0.098 7.098 24 O -0.212 6.212 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.151 0.849 30 H 0.132 0.868 31 H 0.189 0.811 32 H 0.192 0.808 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.284 -15.813 -3.254 16.147 hybrid contribution 0.709 0.685 0.695 1.206 sum 0.425 -15.129 -2.559 15.349 Atomic orbital electron populations 1.21517 0.79053 1.00602 1.01264 1.43866 1.06912 1.04549 1.63071 1.19591 0.98745 0.85830 1.42788 0.91171 1.25987 0.96993 1.02558 0.94782 1.70067 1.17264 1.30116 1.36120 0.85082 0.78102 0.77473 0.78505 1.19042 1.20027 1.20421 1.20883 0.87901 0.85928 0.82268 1.90529 1.16154 1.87965 1.57009 1.20617 0.96685 0.87708 1.07220 1.19400 0.97306 0.94864 0.92234 1.21285 0.95635 0.94005 0.99079 1.20438 0.96624 0.96663 0.95235 1.19840 0.95396 0.92861 0.96193 1.19616 1.00388 0.99678 0.84204 1.20101 0.95153 0.94182 1.00457 1.87579 1.71911 1.29917 1.32663 1.21850 0.75207 0.78779 0.77969 1.93257 1.64010 1.60798 1.95409 1.93238 1.44562 1.90288 1.81724 1.87564 1.55891 1.51041 1.26742 0.93695 0.93065 0.90316 0.91851 0.84859 0.86782 0.81084 0.80754 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.72 8.52 127.77 1.09 5.81 16 2 N -0.46 -22.38 3.02 -658.89 -1.99 -24.37 16 3 C -0.34 -18.77 9.31 84.04 0.78 -17.99 16 4 H 0.07 4.16 7.39 -2.91 -0.02 4.14 16 5 C 0.00 -0.08 5.12 84.93 0.43 0.35 16 6 N -0.90 -46.04 10.56 21.66 0.23 -45.81 16 7 Si 0.98 41.74 29.57 68.60 2.03 43.77 16 8 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 9 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 11 C 0.44 19.48 7.62 87.66 0.67 20.15 16 12 O -0.63 -33.45 15.72 -3.08 -0.05 -33.49 16 13 C -0.08 -2.40 4.35 29.10 0.13 -2.28 16 14 C -0.04 -1.06 4.37 -19.86 -0.09 -1.15 16 15 C -0.08 -1.95 9.69 22.27 0.22 -1.73 16 16 C -0.07 -1.62 10.06 22.34 0.22 -1.40 16 17 C 0.00 0.01 7.15 22.59 0.16 0.17 16 18 C 0.00 0.13 7.15 22.59 0.16 0.29 16 19 C -0.08 -2.43 9.71 22.34 0.22 -2.21 16 20 O -0.30 -9.26 11.35 -76.12 -0.86 -10.12 16 21 C 0.57 15.43 3.69 113.37 0.42 15.84 16 22 F -0.15 -3.83 17.57 44.97 0.79 -3.04 16 23 F -0.12 -2.96 17.57 44.97 0.79 -2.17 16 24 O -0.29 -8.14 11.35 -76.16 -0.86 -9.00 16 25 H 0.04 1.89 7.56 -2.39 -0.02 1.87 16 26 H 0.05 2.22 7.00 -2.38 -0.02 2.20 16 27 H 0.08 2.27 6.36 -2.39 -0.02 2.25 16 28 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 29 H 0.13 2.86 7.35 -2.38 -0.02 2.84 16 30 H 0.11 2.90 8.05 -2.38 -0.02 2.88 16 31 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -67.62 300.95 5.66 -61.97 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 1.17 Total: 6.43 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 4.41 Total: 15.86 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -1.76 Total: -70.19 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: -1.78 Total: -52.62 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 1.58 Total: -5.21 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -67.62 5.66 -61.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593441201.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.206 kcal (2) G-P(sol) polarization free energy of solvation -67.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds