Wall clock time and date at job start Tue Mar 31 2020 07:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34726 * 116.99996 * 2 1 4 4 O 1.21484 * 120.00044 * 0.02562 * 3 2 1 5 5 C 1.47604 * 120.00022 * 179.97438 * 3 2 1 6 6 C 1.40097 * 121.18618 * 354.42338 * 5 3 2 7 7 C 1.38608 * 117.88283 * 180.02562 * 6 5 3 8 8 Cl 1.73605 * 119.91691 * 180.02562 * 7 6 5 9 9 N 1.31968 * 120.16532 * 0.28240 * 7 6 5 10 10 N 1.28273 * 122.65034 * 359.41547 * 9 7 6 11 11 C 1.32648 * 122.21180 * 0.59045 * 10 9 7 12 12 N 1.38328 * 120.26833 * 179.69096 * 11 10 9 13 13 C 1.46500 * 119.99948 * 5.41760 * 12 11 10 14 14 C 1.53001 * 109.47232 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47402 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47121 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00165 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99914 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99904 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00045 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46918 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47254 * 119.99861 * 20 18 16 23 23 H 1.48494 * 109.46920 * 239.99660 * 20 18 16 24 24 H 1.09000 * 109.47176 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47141 * 300.00167 * 1 2 3 26 26 H 1.09004 * 109.47202 * 59.99667 * 1 2 3 27 27 H 1.08001 * 121.05947 * 0.02562 * 6 5 3 28 28 H 0.96996 * 120.00552 * 185.41059 * 12 11 10 29 29 H 1.09005 * 109.47203 * 299.99762 * 13 12 11 30 30 H 1.09001 * 109.47689 * 60.00005 * 13 12 11 31 31 H 1.09005 * 109.46937 * 300.00054 * 14 13 12 32 32 H 1.09003 * 109.47174 * 59.99613 * 14 13 12 33 33 H 1.08999 * 109.46828 * 299.99767 * 15 14 13 34 34 H 1.08999 * 109.46805 * 59.99992 * 15 14 13 35 35 H 0.97007 * 119.99737 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5376 1.2777 0.0006 6 6 4.3245 0.1245 0.1176 7 6 5.7022 0.2763 0.1109 8 17 6.7276 -1.1174 0.2521 9 7 6.2364 1.4782 0.0026 10 7 5.5290 2.5422 -0.1107 11 6 4.2029 2.5125 -0.1157 12 7 3.4796 3.6857 -0.2338 13 6 4.1739 4.9534 -0.4730 14 6 3.1500 6.0866 -0.5631 15 6 3.8751 7.4107 -0.8122 16 6 2.8666 8.5269 -0.9003 17 1 1.8137 8.3135 -0.7893 18 6 3.2880 9.8208 -1.1227 19 7 4.5701 10.0808 -1.2574 20 14 2.0378 11.2044 -1.2327 21 1 0.6714 10.6526 -1.0493 22 1 2.3139 12.2065 -0.1721 23 1 2.1342 11.8539 -2.5646 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 3.8720 -0.8518 0.2101 28 1 2.5127 3.6691 -0.1584 29 1 4.8633 5.1506 0.3480 30 1 4.7306 4.8920 -1.4081 31 1 2.4609 5.8892 -1.3843 32 1 2.5929 6.1482 0.3718 33 1 4.5639 7.6078 0.0093 34 1 4.4324 7.3494 -1.7469 35 1 4.8666 10.9911 -1.4135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:30 Heat of formation + Delta-G solvation = -35.527578 kcal Electronic energy + Delta-G solvation = -21004.106882 eV Core-core repulsion = 17449.833953 eV Total energy + Delta-G solvation = -3554.272928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 299.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.66087 -40.38849 -37.57197 -36.93927 -36.38398 -34.05913 -33.61426 -32.02253 -30.21961 -28.39104 -26.77650 -25.90770 -24.05203 -22.72451 -21.98647 -20.42837 -18.83876 -18.13631 -17.68370 -17.23520 -16.90380 -16.31346 -15.78911 -15.72496 -14.87126 -14.64700 -14.55006 -14.31518 -13.76248 -13.74578 -12.85075 -12.57024 -12.35326 -11.95003 -11.93015 -11.81018 -11.61847 -11.29508 -11.28405 -11.02604 -10.81653 -10.76498 -10.56552 -10.42155 -9.90327 -9.81953 -9.51199 -9.13605 -8.38513 -8.16872 -6.02967 -4.05879 -0.14062 0.72630 1.44287 1.98114 2.08197 2.96787 3.23335 3.29629 3.37208 3.41134 3.85263 4.09423 4.17090 4.38913 4.44176 4.70012 4.80264 4.81362 5.02696 5.18035 5.33027 5.34470 5.57904 5.68018 5.78920 6.07867 6.49938 6.52945 6.92730 6.94723 7.11317 7.50473 7.61810 7.73334 7.95593 8.36735 8.42359 9.00685 9.58442 11.08299 Molecular weight = 299.08amu Principal moments of inertia in cm(-1) A = 0.017519 B = 0.003087 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.870963 B = 9066.987603 C =10628.592163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.350 6.350 3 C 0.527 3.473 4 O -0.498 6.498 5 C -0.199 4.199 6 C 0.008 3.992 7 C 0.024 3.976 8 Cl -0.013 7.013 9 N -0.146 5.146 10 N -0.273 5.273 11 C 0.393 3.607 12 N -0.670 5.670 13 C 0.110 3.890 14 C -0.122 4.122 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.106 0.894 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.170 0.830 28 H 0.426 0.574 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.913 -26.074 3.231 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.265 6.265 3 C 0.372 3.628 4 O -0.386 6.386 5 C -0.217 4.217 6 C -0.021 4.021 7 C -0.149 4.149 8 Cl 0.014 6.986 9 N 0.005 4.995 10 N -0.131 5.131 11 C 0.146 3.854 12 N -0.306 5.306 13 C -0.012 4.012 14 C -0.160 4.160 15 C -0.012 4.012 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.124 0.876 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.187 0.813 28 H 0.274 0.726 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.660 -24.599 3.095 24.935 hybrid contribution -2.298 -0.141 0.038 2.303 sum -4.959 -24.740 3.133 25.426 Atomic orbital electron populations 1.23398 0.74930 1.04202 1.03238 1.86514 1.24339 1.31574 1.84114 1.20510 0.87650 0.81955 0.72667 1.90641 1.65985 1.35480 1.46495 1.19520 0.91038 0.93591 1.17549 1.22293 0.91698 0.99787 0.88370 1.22857 0.89778 0.91330 1.10953 1.98401 1.68161 1.35532 1.96477 1.72543 1.30950 0.94417 1.01620 1.73575 1.01680 1.17684 1.20178 1.20173 0.90956 0.86606 0.87638 1.45910 1.11265 1.04182 1.69201 1.21970 0.96394 0.80795 1.02041 1.21917 0.97475 0.95401 1.01217 1.19027 0.95713 0.88979 0.97495 1.21233 0.93355 0.92180 1.49301 0.92589 1.25024 0.95215 0.98896 0.95301 1.69976 1.13751 1.20147 1.49332 0.86526 0.81599 0.82170 0.77648 1.19766 1.20970 1.20984 0.87550 0.91338 0.91312 0.81294 0.72586 0.90670 0.90947 0.92588 0.92542 0.96090 0.96135 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.06 9.98 -40.56 -0.40 -3.46 16 3 C 0.53 6.00 7.90 34.55 0.27 6.27 16 4 O -0.50 -6.73 13.60 -19.25 -0.26 -6.99 16 5 C -0.20 -2.37 5.93 -104.43 -0.62 -2.99 16 6 C 0.01 0.08 9.57 -38.75 -0.37 -0.29 16 7 C 0.02 0.27 7.36 -17.36 -0.13 0.15 16 8 Cl -0.01 -0.13 29.13 -51.86 -1.51 -1.64 16 9 N -0.15 -2.11 11.46 32.85 0.38 -1.73 16 10 N -0.27 -4.30 10.74 31.38 0.34 -3.96 16 11 C 0.39 5.74 7.57 -154.85 -1.17 4.56 16 12 N -0.67 -10.39 5.59 -60.09 -0.34 -10.73 16 13 C 0.11 1.91 5.71 -4.04 -0.02 1.89 16 14 C -0.12 -2.44 5.27 -26.73 -0.14 -2.58 16 15 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 16 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.17 1.06 7.77 -52.49 -0.41 0.65 16 28 H 0.43 6.52 5.14 -40.82 -0.21 6.31 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -31.34 326.28 -6.79 -38.13 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.96 Total: -0.47 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.66 Total: -4.64 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 1.11 Total: -42.42 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.67 Total: -10.45 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.51 Total: -1.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.34 -6.79 -38.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.603 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds