Wall clock time and date at job start Tue Mar 31 2020 07:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 S 1.81399 * 109.47359 * 120.00032 * 2 1 3 14 14 C 1.76195 * 103.00094 * 295.00336 * 13 2 1 15 15 N 1.29639 * 125.41286 * 0.02562 * 14 13 2 16 16 N 1.37767 * 115.60530 * 179.97438 * 15 14 13 17 17 C 1.29573 * 115.62741 * 0.02562 * 16 15 14 18 18 N 1.38996 * 125.40835 * 180.02562 * 17 16 15 19 19 C 1.48530 * 111.00166 * 242.58312 * 18 17 16 20 20 C 1.54943 * 103.22900 * 159.71868 * 19 18 17 21 21 C 1.54603 * 102.91836 * 322.58769 * 20 19 18 22 22 C 1.47907 * 110.99678 * 359.97438 * 18 17 16 23 23 S 1.76040 * 109.19015 * 359.77506 * 17 16 15 24 24 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 26 26 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 27 27 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 28 28 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 29 29 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 30 30 H 1.09000 * 110.66782 * 278.15126 * 19 18 17 31 31 H 1.08996 * 110.66984 * 41.28659 * 19 18 17 32 32 H 1.08994 * 110.72479 * 204.22634 * 20 19 18 33 33 H 1.08996 * 110.87250 * 81.01048 * 20 19 18 34 34 H 1.09002 * 110.30455 * 263.04051 * 21 20 19 35 35 H 1.08998 * 110.30589 * 140.87612 * 21 20 19 36 36 H 1.08997 * 109.91535 * 333.51027 * 22 18 17 37 37 H 1.08999 * 109.91616 * 94.80341 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 5.5401 -1.0905 -2.4195 9 14 3.3009 -2.1031 -3.6988 10 1 2.9338 -1.1567 -4.7827 11 1 4.1620 -3.1793 -4.2519 12 1 2.0685 -2.7009 -3.1252 13 16 2.1347 -0.8551 1.4811 14 6 1.5827 0.1845 2.7922 15 7 0.9090 1.2826 2.6474 16 7 0.5806 1.9379 3.8139 17 6 0.9872 1.3737 4.9071 18 7 0.7694 1.8570 6.1920 19 6 2.0540 2.1809 6.8638 20 6 1.6286 3.1541 7.9919 21 6 0.5111 3.9888 7.3251 22 6 0.0015 3.1207 6.1598 23 16 1.8530 -0.1060 4.5073 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.6052 -0.2616 -2.1370 28 1 1.7516 -1.7714 -1.2057 29 1 6.0241 -1.4941 -3.1568 30 1 2.5069 1.2818 7.2818 31 1 2.7378 2.6708 6.1707 32 1 2.4625 3.7912 8.2863 33 1 1.2409 2.6070 8.8511 34 1 0.9146 4.9287 6.9483 35 1 -0.2936 4.1792 8.0352 36 1 0.1703 3.6337 5.2131 37 1 -1.0607 2.9130 6.2885 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188301481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:19 Heat of formation + Delta-G solvation = 63.969009 kcal Electronic energy + Delta-G solvation = -19112.550497 eV Core-core repulsion = 16143.221736 eV Total energy + Delta-G solvation = -2969.328761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 299.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17119 -38.41317 -34.80913 -33.19327 -32.16296 -30.10197 -29.30259 -28.04156 -25.07953 -23.19964 -22.78133 -21.75800 -20.78698 -20.05442 -18.97999 -17.23524 -16.82395 -16.54413 -15.90643 -15.28687 -14.86347 -14.37055 -14.26657 -13.66095 -13.40947 -13.20250 -12.90597 -12.72999 -12.60026 -12.29939 -11.91640 -11.83351 -11.65638 -11.54895 -11.35634 -10.99292 -10.91064 -10.69753 -10.67278 -10.13714 -9.93017 -9.74718 -9.61007 -9.51938 -9.33011 -8.92160 -8.62547 -7.33252 -6.11989 -4.12124 0.57219 0.70027 1.24868 1.70261 2.23786 2.70366 3.25364 3.33200 3.33725 3.35284 4.05563 4.25020 4.37205 4.57147 4.62188 4.87795 5.00687 5.14706 5.21637 5.27305 5.39032 5.44553 5.48144 5.55110 5.60956 5.64253 5.74562 5.90938 6.11696 6.31644 6.33319 6.41280 6.54963 6.91768 7.07255 7.60295 7.97163 8.40969 8.93088 9.47965 11.00506 Molecular weight = 299.08amu Principal moments of inertia in cm(-1) A = 0.035227 B = 0.003236 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.663810 B = 8650.337028 C = 8919.074614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.055 4.055 3 H 0.097 0.903 4 C 0.001 3.999 5 C -0.528 4.528 6 H 0.082 0.918 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.264 1.264 13 S 0.056 5.944 14 C 0.031 3.969 15 N -0.286 5.286 16 N -0.320 5.320 17 C 0.210 3.790 18 N -0.429 5.429 19 C 0.035 3.965 20 C -0.121 4.121 21 C -0.131 4.131 22 C 0.037 3.963 23 S 0.088 5.912 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.028 0.972 29 H 0.265 0.735 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 5.540 19.542 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.186 4.186 3 H 0.115 0.885 4 C -0.038 4.038 5 C -0.566 4.566 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.189 1.189 13 S 0.287 5.713 14 C -0.366 4.366 15 N -0.117 5.117 16 N -0.150 5.150 17 C -0.173 4.173 18 N -0.152 5.152 19 C -0.091 4.091 20 C -0.159 4.159 21 C -0.170 4.170 22 C -0.092 4.092 23 S 0.324 5.676 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.993 4.422 19.509 21.932 hybrid contribution -0.693 1.135 -1.260 1.832 sum -9.686 5.557 18.248 21.394 Atomic orbital electron populations 1.22137 0.93927 1.02216 1.02685 1.23606 0.97478 1.03107 0.94385 0.88451 1.19574 0.98132 0.95717 0.90366 1.21125 0.89089 1.36207 1.10210 0.90045 1.24975 0.94723 0.95591 0.97662 1.69901 1.06572 1.44772 1.32036 0.86865 0.80379 0.80141 0.82518 1.20140 1.21166 1.18865 1.86276 1.65452 1.26429 0.93182 1.31293 1.01796 1.01494 1.02003 1.75541 1.15015 1.05420 1.15760 1.75183 1.22415 1.24079 0.93301 1.27306 0.99334 0.96504 0.94187 1.62022 1.16185 1.28753 1.08271 1.23525 0.89039 1.00502 0.96084 1.22499 0.98683 0.97246 0.97494 1.22455 0.98858 0.98483 0.97170 1.23016 0.98848 0.87321 0.99969 1.85459 1.58301 1.24354 0.99500 0.92255 0.91829 0.91633 0.94486 0.95421 0.92551 0.88556 0.91902 0.89991 0.90037 0.90762 0.90281 0.90282 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.06 37.16 0.34 -2.22 16 2 C -0.06 -1.10 2.47 -26.73 -0.07 -1.16 16 3 H 0.10 2.04 8.14 -51.92 -0.42 1.62 16 4 C 0.00 0.03 3.52 -27.88 -0.10 -0.07 16 5 C -0.53 -14.33 9.09 -34.44 -0.31 -14.64 16 6 H 0.08 2.40 7.85 -52.49 -0.41 1.98 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 9 Si 0.87 20.86 27.46 -169.99 -4.67 16.20 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.26 -6.01 6.55 56.52 0.37 -5.64 16 13 S 0.06 1.06 20.90 -107.50 -2.25 -1.19 16 14 C 0.03 0.54 7.58 51.84 0.39 0.94 16 15 N -0.29 -5.35 9.95 31.11 0.31 -5.04 16 16 N -0.32 -5.48 10.47 30.85 0.32 -5.16 16 17 C 0.21 3.06 6.83 -87.40 -0.60 2.46 16 18 N -0.43 -4.92 5.37 -169.72 -0.91 -5.84 16 19 C 0.04 0.31 6.38 -1.90 -0.01 0.30 16 20 C -0.12 -0.76 7.06 -24.86 -0.18 -0.94 16 21 C -0.13 -0.90 6.93 -25.37 -0.18 -1.07 16 22 C 0.04 0.37 6.46 -2.76 -0.02 0.36 16 23 S 0.09 1.28 23.25 -107.50 -2.50 -1.22 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 1.10 6.23 -51.93 -0.32 0.77 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.82 7.56 -51.93 -0.39 0.43 16 28 H 0.03 0.63 7.21 -51.93 -0.37 0.25 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.60 8.00 -51.93 -0.42 0.19 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.94 6.80 -51.93 -0.35 0.59 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 328.18 15.07 4.95 4.95 Total: -1.00 -30.66 328.18 -10.04 -40.70 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.24 Total: -3.26 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -0.82 Total: -14.10 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.49 Total: -42.08 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -4.75 Total: -2.41 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.66 -10.04 -40.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188301481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.668 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds