Wall clock time and date at job start Tue Mar 31 2020 07:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 S 1.81399 * 109.47359 * 120.00032 * 2 1 3 14 14 C 1.76195 * 103.00094 * 295.00336 * 13 2 1 15 15 N 1.29639 * 125.41286 * 0.02562 * 14 13 2 16 16 N 1.37767 * 115.60530 * 179.97438 * 15 14 13 17 17 C 1.29573 * 115.62741 * 0.02562 * 16 15 14 18 18 N 1.38996 * 125.40835 * 180.02562 * 17 16 15 19 19 C 1.48530 * 111.00166 * 242.58312 * 18 17 16 20 20 C 1.54943 * 103.22900 * 159.71868 * 19 18 17 21 21 C 1.54603 * 102.91836 * 322.58769 * 20 19 18 22 22 C 1.47907 * 110.99678 * 359.97438 * 18 17 16 23 23 S 1.76040 * 109.19015 * 359.77506 * 17 16 15 24 24 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 26 26 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 27 27 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 28 28 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 29 29 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 30 30 H 1.09000 * 110.66782 * 278.15126 * 19 18 17 31 31 H 1.08996 * 110.66984 * 41.28659 * 19 18 17 32 32 H 1.08994 * 110.72479 * 204.22634 * 20 19 18 33 33 H 1.08996 * 110.87250 * 81.01048 * 20 19 18 34 34 H 1.09002 * 110.30455 * 263.04051 * 21 20 19 35 35 H 1.08998 * 110.30589 * 140.87612 * 21 20 19 36 36 H 1.08997 * 109.91535 * 333.51027 * 22 18 17 37 37 H 1.08999 * 109.91616 * 94.80341 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 5.5401 -1.0905 -2.4195 9 14 3.3009 -2.1031 -3.6988 10 1 2.9338 -1.1567 -4.7827 11 1 4.1620 -3.1793 -4.2519 12 1 2.0685 -2.7009 -3.1252 13 16 2.1347 -0.8551 1.4811 14 6 1.5827 0.1845 2.7922 15 7 0.9090 1.2826 2.6474 16 7 0.5806 1.9379 3.8139 17 6 0.9872 1.3737 4.9071 18 7 0.7694 1.8570 6.1920 19 6 2.0540 2.1809 6.8638 20 6 1.6286 3.1541 7.9919 21 6 0.5111 3.9888 7.3251 22 6 0.0015 3.1207 6.1598 23 16 1.8530 -0.1060 4.5073 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.6052 -0.2616 -2.1370 28 1 1.7516 -1.7714 -1.2057 29 1 6.0241 -1.4941 -3.1568 30 1 2.5069 1.2818 7.2818 31 1 2.7378 2.6708 6.1707 32 1 2.4625 3.7912 8.2863 33 1 1.2409 2.6070 8.8511 34 1 0.9146 4.9287 6.9483 35 1 -0.2936 4.1792 8.0352 36 1 0.1703 3.6337 5.2131 37 1 -1.0607 2.9130 6.2885 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188301481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:18 Heat of formation + Delta-G solvation = 45.059248 kcal Electronic energy + Delta-G solvation = -19113.370486 eV Core-core repulsion = 16143.221736 eV Total energy + Delta-G solvation = -2970.148750 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 299.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20910 -39.48094 -36.54997 -34.31701 -33.98961 -31.18821 -30.08996 -29.78954 -26.26201 -25.01169 -23.77786 -22.61459 -22.30787 -21.08233 -20.19627 -18.92089 -18.37770 -17.58129 -16.99975 -16.61586 -16.33312 -16.03204 -15.19094 -14.90400 -14.64626 -14.41652 -14.22793 -14.07253 -13.79753 -13.55932 -13.47869 -13.18542 -12.76213 -12.47850 -12.44184 -12.31199 -12.18683 -11.94937 -11.75899 -11.69215 -11.52009 -11.43590 -11.25108 -11.11000 -10.74710 -10.66482 -9.98826 -8.79341 -8.26123 -6.31473 -0.69422 -0.54715 -0.02086 0.33113 0.95457 1.18974 1.38835 1.40669 1.51165 2.31549 2.37420 3.09077 3.26911 3.55988 3.63078 3.92340 3.95237 4.04222 4.08347 4.16679 4.38984 4.42447 4.57387 4.77232 4.81951 4.83073 4.88247 4.89359 5.05206 5.07608 5.12677 5.18288 5.29510 5.41344 5.43742 5.58179 6.26327 6.69677 6.75491 7.31972 8.89627 Molecular weight = 299.08amu Principal moments of inertia in cm(-1) A = 0.035227 B = 0.003236 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.663810 B = 8650.337028 C = 8919.074614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 H 0.076 0.924 4 C 0.005 3.995 5 C -0.529 4.529 6 H 0.042 0.958 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.241 1.241 13 S 0.031 5.969 14 C 0.013 3.987 15 N -0.305 5.305 16 N -0.348 5.348 17 C 0.220 3.780 18 N -0.429 5.429 19 C 0.027 3.973 20 C -0.112 4.112 21 C -0.125 4.125 22 C 0.032 3.968 23 S 0.136 5.864 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.266 0.734 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.998 5.396 21.124 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.181 4.181 3 H 0.095 0.905 4 C -0.034 4.034 5 C -0.568 4.568 6 H 0.060 0.940 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.765 3.235 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.164 1.164 13 S 0.261 5.739 14 C -0.384 4.384 15 N -0.136 5.136 16 N -0.180 5.180 17 C -0.163 4.163 18 N -0.153 5.153 19 C -0.099 4.099 20 C -0.150 4.150 21 C -0.163 4.163 22 C -0.096 4.096 23 S 0.372 5.628 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.757 4.296 21.126 24.093 hybrid contribution -0.127 1.285 -1.492 1.973 sum -10.884 5.581 19.634 23.132 Atomic orbital electron populations 1.22050 0.91365 1.03276 1.03185 1.23422 0.99428 1.01495 0.93798 0.90524 1.19486 0.95025 0.96603 0.92291 1.21361 0.91531 1.34953 1.08931 0.93998 1.25910 0.95506 0.96776 1.00460 1.70059 1.08602 1.46686 1.33323 0.85779 0.79623 0.78787 0.79279 1.19184 1.21246 1.16443 1.86145 1.66882 1.26986 0.93844 1.31081 1.02550 1.01542 1.03273 1.75493 1.14992 1.05718 1.17385 1.75201 1.24549 1.24686 0.93544 1.27710 0.97423 0.96304 0.94891 1.62160 1.17565 1.29438 1.06144 1.23748 0.87682 1.01868 0.96570 1.22537 0.99074 0.96743 0.96626 1.22468 0.99659 0.97988 0.96204 1.23123 0.99067 0.86984 1.00438 1.85232 1.57479 1.23564 0.96486 0.90854 0.92244 0.90160 0.93297 0.94592 0.92503 0.87325 0.92818 0.88030 0.88710 0.90245 0.88333 0.92487 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.06 71.98 0.65 -3.93 16 2 C -0.05 -2.03 2.47 30.59 0.08 -1.96 16 3 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 4 C 0.01 0.23 3.52 29.85 0.10 0.33 16 5 C -0.53 -29.39 9.09 25.60 0.23 -29.16 16 6 H 0.04 2.59 7.85 -2.91 -0.02 2.57 16 7 C 0.01 0.62 5.47 84.65 0.46 1.09 16 8 N -0.95 -58.40 13.96 21.45 0.30 -58.10 16 9 Si 0.94 42.65 27.46 68.60 1.88 44.53 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.24 -9.95 6.55 99.48 0.65 -9.30 16 13 S 0.03 1.21 20.90 -56.49 -1.18 0.03 16 14 C 0.01 0.46 7.58 130.57 0.99 1.45 16 15 N -0.30 -11.53 9.95 -55.48 -0.55 -12.08 16 16 N -0.35 -11.97 10.47 -56.30 -0.59 -12.56 16 17 C 0.22 6.21 6.83 179.22 1.22 7.43 16 18 N -0.43 -9.17 5.37 -690.87 -3.71 -12.88 16 19 C 0.03 0.42 6.38 86.65 0.55 0.98 16 20 C -0.11 -1.04 7.06 31.80 0.22 -0.81 16 21 C -0.12 -1.37 6.93 31.47 0.22 -1.15 16 22 C 0.03 0.60 6.46 86.44 0.56 1.16 16 23 S 0.14 3.83 23.25 -56.49 -1.31 2.51 16 24 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.06 2.01 6.23 -2.38 -0.01 2.00 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.05 2.08 7.56 -2.39 -0.02 2.07 16 28 H 0.04 1.56 7.21 -2.38 -0.02 1.54 16 29 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 0.95 8.00 -2.39 -0.02 0.94 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 1.34 6.80 -2.39 -0.02 1.33 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -68.06 328.18 1.15 -66.92 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.01 Total: 6.19 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 5.30 Total: -24.57 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -4.55 Total: -95.62 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -2.49 Total: 2.55 kcal Total: -68.06 1.15 -66.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188301481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.976 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds