Wall clock time and date at job start Tue Mar 31 2020 07:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.34485 * 126.16685 * 2 1 4 4 C 1.30258 * 108.70349 * 179.73948 * 3 2 1 5 5 C 1.50694 * 125.61849 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47330 * 299.97886 * 5 4 3 7 7 C 1.53006 * 109.47178 * 59.97711 * 5 4 3 8 8 O 1.33971 * 108.75981 * 0.02562 * 4 3 2 9 9 C 1.34334 * 126.17109 * 179.69236 * 2 1 3 10 10 C 1.50703 * 126.43794 * 0.28193 * 9 2 1 11 11 O 1.45203 * 109.47040 * 89.99652 * 10 9 2 12 12 C 1.34230 * 116.99791 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00219 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00005 * 180.02562 * 12 11 10 15 15 S 1.81000 * 109.47206 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99758 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00421 * 0.02562 * 16 15 14 18 18 C 1.38802 * 120.00010 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99780 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00490 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47212 * 59.99273 * 20 18 16 22 22 H 1.48492 * 109.47529 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46683 * 299.99716 * 20 18 16 24 24 H 1.08997 * 109.47722 * 90.02277 * 1 2 3 25 25 H 1.09002 * 109.47017 * 210.02303 * 1 2 3 26 26 H 1.09000 * 109.47384 * 330.02178 * 1 2 3 27 27 H 1.08997 * 109.46950 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.47195 * 299.99568 * 6 5 4 29 29 H 1.08998 * 109.47565 * 59.99808 * 6 5 4 30 30 H 1.09001 * 109.47094 * 179.97438 * 6 5 4 31 31 H 1.09005 * 109.46667 * 59.99697 * 7 5 4 32 32 H 1.08991 * 109.47241 * 179.97438 * 7 5 4 33 33 H 1.08998 * 109.47056 * 300.00427 * 7 5 4 34 34 H 1.08999 * 109.47313 * 209.99613 * 10 9 2 35 35 H 1.08996 * 109.47120 * 330.00132 * 10 9 2 36 36 H 1.08994 * 109.47158 * 300.00317 * 14 12 11 37 37 H 1.09003 * 109.46727 * 60.00563 * 14 12 11 38 38 H 0.96996 * 120.00295 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6948 0.0056 5 6 4.7479 1.6000 0.0082 6 6 4.7275 2.4798 -1.2434 7 6 4.7173 2.4862 1.2550 8 8 3.5734 -0.6446 0.0087 9 6 2.2997 -1.0844 0.0058 10 6 1.8493 -2.5226 0.0076 11 8 1.7100 -2.9878 -1.3608 12 6 1.3135 -4.2583 -1.5351 13 8 1.0897 -4.9583 -0.5761 14 6 1.1474 -4.8116 -2.9270 15 16 0.6066 -6.5362 -2.8302 16 6 0.4964 -6.9190 -4.5465 17 1 0.7364 -6.1675 -5.2840 18 6 0.1010 -8.1867 -4.9508 19 7 -0.1910 -9.1029 -4.0520 20 14 -0.0152 -8.5929 -6.7704 21 1 1.3159 -8.4131 -7.4038 22 1 -0.4555 -10.0013 -6.9361 23 1 -0.9978 -7.6871 -7.4179 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 5.6556 0.9966 0.0134 28 1 4.7493 1.8485 -2.1317 29 1 3.8197 3.0832 -1.2487 30 1 5.5987 3.1348 -1.2413 31 1 4.7318 1.8594 2.1467 32 1 5.5889 3.1406 1.2571 33 1 3.8096 3.0895 1.2498 34 1 2.5880 -3.1340 0.5258 35 1 0.8894 -2.6020 0.5178 36 1 0.4006 -4.2266 -3.4638 37 1 2.0994 -4.7580 -3.4552 38 1 -0.4676 -9.9886 -4.3345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813223663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:55 Heat of formation + Delta-G solvation = -79.554419 kcal Electronic energy + Delta-G solvation = -21016.651439 eV Core-core repulsion = 17566.053413 eV Total energy + Delta-G solvation = -3450.598026 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.102 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.62056 -40.12977 -36.52734 -36.09008 -35.31177 -32.51084 -32.06776 -30.00308 -28.63964 -27.62046 -26.03294 -25.54154 -23.23862 -21.43673 -21.03631 -20.54397 -18.03908 -17.48478 -17.06623 -16.71429 -16.44107 -16.06213 -15.06540 -14.86904 -14.79289 -14.17455 -14.02141 -13.78295 -13.63606 -13.40263 -13.13930 -12.71969 -12.63417 -12.58450 -12.23453 -12.17010 -12.10379 -11.73528 -11.45727 -11.13217 -11.08039 -11.07163 -10.87216 -10.83068 -10.58392 -10.18890 -9.94975 -9.13140 -8.88038 -8.40782 -6.63955 -6.29733 -4.02974 1.00507 2.16882 2.38034 2.54364 2.78752 3.20437 3.23231 3.26306 3.48737 3.64334 4.12466 4.31847 4.45961 4.58369 4.58709 4.68177 4.87084 4.95951 5.06122 5.15066 5.21033 5.28120 5.30504 5.39289 5.41445 5.47951 5.51893 5.53418 5.68914 5.72562 5.78992 5.82366 5.86605 6.03346 6.13746 6.50676 7.48998 7.52777 8.03075 8.27673 9.15657 10.77691 Molecular weight = 299.10amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.002551 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.559251 B =10973.005271 C =11334.665569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.022 3.978 3 N -0.478 5.478 4 C 0.206 3.794 5 C 0.003 3.997 6 C -0.144 4.144 7 C -0.143 4.143 8 O -0.193 6.193 9 C -0.060 4.060 10 C 0.155 3.845 11 O -0.357 6.357 12 C 0.482 3.518 13 O -0.485 6.485 14 C -0.128 4.128 15 S -0.056 6.056 16 C -0.537 4.537 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.922 3.078 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.273 1.273 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 22.354 8.633 25.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 N -0.207 5.207 4 C -0.001 4.001 5 C -0.017 4.017 6 C -0.202 4.202 7 C -0.201 4.201 8 O -0.080 6.080 9 C -0.112 4.112 10 C 0.081 3.919 11 O -0.275 6.275 12 C 0.324 3.676 13 O -0.370 6.370 14 C -0.276 4.276 15 S 0.170 5.830 16 C -0.685 4.685 17 H 0.094 0.906 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.748 3.252 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.198 1.198 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.265 21.906 9.902 25.114 hybrid contribution 0.432 -0.313 -2.117 2.183 sum 7.697 21.593 7.785 24.210 Atomic orbital electron populations 1.20215 0.86039 1.03481 1.03590 1.21621 0.98117 0.87370 1.02787 1.70338 1.00319 1.31024 1.19045 1.26320 0.95673 0.78966 0.99093 1.19691 0.90387 0.93213 0.98385 1.21844 1.03379 0.99406 0.95527 1.21844 1.03402 0.99347 0.95491 1.84395 1.30007 1.23960 1.69627 1.22521 0.81010 0.96553 1.11148 1.20891 1.02467 0.85858 0.82703 1.86603 1.79834 1.31038 1.30058 1.23378 0.72909 0.78656 0.92684 1.90682 1.45389 1.58467 1.42443 1.23325 1.06564 1.05707 0.92011 1.85410 1.87289 0.99063 1.11231 1.22798 1.53825 1.00807 0.91101 0.90601 1.25005 0.94356 0.95040 0.99082 1.69995 1.42254 1.04303 1.33660 0.86169 0.78794 0.77587 0.82659 1.19835 1.20754 1.19813 0.89990 0.90451 0.90338 0.88346 0.92070 0.91127 0.90881 0.92243 0.90894 0.91129 0.89231 0.87546 0.87739 0.87807 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.22 36.00 0.37 -0.38 16 2 C 0.02 0.27 7.11 -82.81 -0.59 -0.31 16 3 N -0.48 -6.13 11.29 -7.36 -0.08 -6.21 16 4 C 0.21 2.41 6.85 -12.95 -0.09 2.32 16 5 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16 6 C -0.14 -0.97 9.17 37.16 0.34 -0.63 16 7 C -0.14 -0.89 9.18 37.16 0.34 -0.54 16 8 O -0.19 -2.60 10.78 5.37 0.06 -2.54 16 9 C -0.06 -0.80 7.03 -35.68 -0.25 -1.05 16 10 C 0.16 2.08 5.80 36.01 0.21 2.29 16 11 O -0.36 -5.76 10.20 -39.26 -0.40 -6.16 16 12 C 0.48 9.07 7.98 36.01 0.29 9.35 16 13 O -0.48 -10.25 15.61 -18.75 -0.29 -10.54 16 14 C -0.13 -2.58 6.27 36.01 0.23 -2.36 16 15 S -0.06 -1.48 20.58 -107.50 -2.21 -3.69 16 16 C -0.54 -14.95 9.50 30.94 0.29 -14.65 16 17 H 0.08 1.99 7.80 -52.49 -0.41 1.59 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.56 13.22 55.49 0.73 -24.83 16 20 Si 0.92 21.03 29.55 -169.99 -5.02 16.00 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.08 0.67 7.16 -51.93 -0.37 0.29 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 1.16 8.13 -51.93 -0.42 0.73 16 35 H 0.11 1.24 7.15 -51.93 -0.37 0.87 16 36 H 0.10 1.94 8.14 -51.92 -0.42 1.52 16 37 H 0.10 1.95 8.14 -51.92 -0.42 1.53 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -33.26 348.65 -6.60 -39.86 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.36 Total: -2.88 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.73 Total: -4.26 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.65 Total: -31.03 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.64 Total: -19.25 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.26 -6.60 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813223663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.694 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds