Wall clock time and date at job start Tue Mar 31 2020 07:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.34485 * 126.16685 * 2 1 4 4 C 1.30258 * 108.70349 * 179.73948 * 3 2 1 5 5 C 1.50694 * 125.61849 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47330 * 299.97886 * 5 4 3 7 7 C 1.53006 * 109.47178 * 59.97711 * 5 4 3 8 8 O 1.33971 * 108.75981 * 0.02562 * 4 3 2 9 9 C 1.34334 * 126.17109 * 179.69236 * 2 1 3 10 10 C 1.50703 * 126.43794 * 0.28193 * 9 2 1 11 11 O 1.45203 * 109.47040 * 89.99652 * 10 9 2 12 12 C 1.34230 * 116.99791 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00219 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00005 * 180.02562 * 12 11 10 15 15 S 1.81000 * 109.47206 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99758 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00421 * 0.02562 * 16 15 14 18 18 C 1.38802 * 120.00010 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99780 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00490 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47212 * 59.99273 * 20 18 16 22 22 H 1.48492 * 109.47529 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46683 * 299.99716 * 20 18 16 24 24 H 1.08997 * 109.47722 * 90.02277 * 1 2 3 25 25 H 1.09002 * 109.47017 * 210.02303 * 1 2 3 26 26 H 1.09000 * 109.47384 * 330.02178 * 1 2 3 27 27 H 1.08997 * 109.46950 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.47195 * 299.99568 * 6 5 4 29 29 H 1.08998 * 109.47565 * 59.99808 * 6 5 4 30 30 H 1.09001 * 109.47094 * 179.97438 * 6 5 4 31 31 H 1.09005 * 109.46667 * 59.99697 * 7 5 4 32 32 H 1.08991 * 109.47241 * 179.97438 * 7 5 4 33 33 H 1.08998 * 109.47056 * 300.00427 * 7 5 4 34 34 H 1.08999 * 109.47313 * 209.99613 * 10 9 2 35 35 H 1.08996 * 109.47120 * 330.00132 * 10 9 2 36 36 H 1.08994 * 109.47158 * 300.00317 * 14 12 11 37 37 H 1.09003 * 109.46727 * 60.00563 * 14 12 11 38 38 H 0.96996 * 120.00295 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6948 0.0056 5 6 4.7479 1.6000 0.0082 6 6 4.7275 2.4798 -1.2434 7 6 4.7173 2.4862 1.2550 8 8 3.5734 -0.6446 0.0087 9 6 2.2997 -1.0844 0.0058 10 6 1.8493 -2.5226 0.0076 11 8 1.7100 -2.9878 -1.3608 12 6 1.3135 -4.2583 -1.5351 13 8 1.0897 -4.9583 -0.5761 14 6 1.1474 -4.8116 -2.9270 15 16 0.6066 -6.5362 -2.8302 16 6 0.4964 -6.9190 -4.5465 17 1 0.7364 -6.1675 -5.2840 18 6 0.1010 -8.1867 -4.9508 19 7 -0.1910 -9.1029 -4.0520 20 14 -0.0152 -8.5929 -6.7704 21 1 1.3159 -8.4131 -7.4038 22 1 -0.4555 -10.0013 -6.9361 23 1 -0.9978 -7.6871 -7.4179 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 5.6556 0.9966 0.0134 28 1 4.7493 1.8485 -2.1317 29 1 3.8197 3.0832 -1.2487 30 1 5.5987 3.1348 -1.2413 31 1 4.7318 1.8594 2.1467 32 1 5.5889 3.1406 1.2571 33 1 3.8096 3.0895 1.2498 34 1 2.5880 -3.1340 0.5258 35 1 0.8894 -2.6020 0.5178 36 1 0.4006 -4.2266 -3.4638 37 1 2.0994 -4.7580 -3.4552 38 1 -0.4676 -9.9886 -4.3345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813223663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:53 Heat of formation + Delta-G solvation = -101.007755 kcal Electronic energy + Delta-G solvation = -21017.581725 eV Core-core repulsion = 17566.053413 eV Total energy + Delta-G solvation = -3451.528312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.102 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -44.56949 -41.57461 -37.84353 -36.86422 -36.23902 -34.61443 -33.06876 -31.42980 -29.69251 -28.12382 -27.72370 -26.89246 -24.11832 -22.71695 -22.11978 -21.33096 -19.95116 -18.89128 -18.16772 -17.80595 -17.76000 -17.21152 -16.89455 -16.10885 -15.96747 -15.57559 -15.11625 -14.88458 -14.57256 -14.34944 -14.15088 -14.09552 -13.83230 -13.58591 -13.19922 -13.11930 -13.08992 -12.87882 -12.73002 -12.68073 -12.32363 -12.10755 -11.99438 -11.92845 -11.82656 -11.76139 -11.57389 -11.14904 -10.40177 -9.84590 -8.74127 -8.37792 -6.17537 -0.01107 0.98440 1.03944 1.34484 1.44580 1.45851 1.46802 1.55291 1.99805 2.23545 2.80419 2.97256 3.24688 3.41961 3.63202 3.71921 3.77756 3.95219 4.03048 4.07617 4.14795 4.20119 4.42191 4.47509 4.64014 4.66239 4.73511 4.77011 4.88234 4.88911 4.94785 5.06067 5.09600 5.21762 5.28467 5.37891 5.40719 6.17533 6.54853 6.56991 7.03973 8.71061 Molecular weight = 299.10amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.002551 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.559251 B =10973.005271 C =11334.665569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 N -0.498 5.498 4 C 0.211 3.789 5 C -0.001 4.001 6 C -0.140 4.140 7 C -0.138 4.138 8 O -0.208 6.208 9 C -0.085 4.085 10 C 0.155 3.845 11 O -0.352 6.352 12 C 0.494 3.506 13 O -0.512 6.512 14 C -0.109 4.109 15 S -0.131 6.131 16 C -0.550 4.550 17 H 0.086 0.914 18 C 0.017 3.983 19 N -0.909 5.909 20 Si 0.998 3.002 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.262 1.262 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.513 24.168 7.696 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 N -0.228 5.228 4 C 0.004 3.996 5 C -0.021 4.021 6 C -0.197 4.197 7 C -0.195 4.195 8 O -0.096 6.096 9 C -0.137 4.137 10 C 0.082 3.918 11 O -0.270 6.270 12 C 0.337 3.663 13 O -0.400 6.400 14 C -0.258 4.258 15 S 0.096 5.904 16 C -0.698 4.698 17 H 0.104 0.896 18 C -0.188 4.188 19 N -0.545 5.545 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.186 1.186 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.132 0.868 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.031 23.753 8.971 26.630 hybrid contribution 0.269 -0.686 -1.737 1.887 sum 8.299 23.067 7.234 25.560 Atomic orbital electron populations 1.20342 0.84327 1.04663 1.04107 1.22105 0.99348 0.87164 1.01283 1.70394 1.00928 1.31190 1.20275 1.27312 0.96673 0.78714 0.96856 1.20047 0.89342 0.93133 0.99554 1.21838 1.04161 0.99236 0.94489 1.21832 1.04141 0.99157 0.94417 1.84390 1.30214 1.24896 1.70102 1.22504 0.81308 0.96538 1.13371 1.21099 1.03613 0.86051 0.81075 1.86560 1.79053 1.29225 1.32140 1.22959 0.72440 0.79233 0.91692 1.90679 1.46783 1.59418 1.43090 1.23112 1.07659 1.01473 0.93523 1.85494 1.88084 1.04815 1.12032 1.23160 1.53756 1.01441 0.91405 0.89641 1.26102 0.93654 0.94796 1.04294 1.70147 1.43345 1.04818 1.36177 0.85000 0.79314 0.77499 0.76192 1.18748 1.20328 1.18632 0.89657 0.89257 0.89230 0.86756 0.93089 0.92220 0.88055 0.92676 0.88162 0.92208 0.88966 0.85828 0.85797 0.86185 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.22 71.23 0.73 -0.69 16 2 C 0.02 0.52 7.11 41.26 0.29 0.82 16 3 N -0.50 -12.40 11.29 -291.98 -3.30 -15.70 16 4 C 0.21 4.75 6.85 88.34 0.61 5.35 16 5 C 0.00 -0.02 3.39 -11.54 -0.04 -0.06 16 6 C -0.14 -1.62 9.17 71.98 0.66 -0.96 16 7 C -0.14 -1.44 9.18 71.98 0.66 -0.78 16 8 O -0.21 -5.50 10.78 -3.70 -0.04 -5.54 16 9 C -0.09 -2.23 7.03 24.79 0.17 -2.06 16 10 C 0.16 4.04 5.80 71.24 0.41 4.45 16 11 O -0.35 -10.99 10.20 -51.42 -0.52 -11.51 16 12 C 0.49 18.25 7.98 71.24 0.57 18.82 16 13 O -0.51 -21.69 15.61 21.97 0.34 -21.35 16 14 C -0.11 -4.31 6.27 71.24 0.45 -3.86 16 15 S -0.13 -7.00 20.58 -56.49 -1.16 -8.16 16 16 C -0.55 -30.54 9.50 67.96 0.65 -29.90 16 17 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 18 C 0.02 0.94 5.49 84.86 0.47 1.40 16 19 N -0.91 -54.29 13.22 21.65 0.29 -54.00 16 20 Si 1.00 42.63 29.55 68.60 2.03 44.66 16 21 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 22 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 24 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 1.40 7.16 -2.39 -0.02 1.39 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 2.35 8.13 -2.39 -0.02 2.33 16 35 H 0.12 2.76 7.15 -2.39 -0.02 2.74 16 36 H 0.12 4.41 8.14 -2.40 -0.02 4.39 16 37 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 38 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -72.18 348.65 4.31 -67.87 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.06 Total: 11.20 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.62 Total: -7.47 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -3.01 Total: -69.70 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.22 Total: -38.40 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -7.00 SS G_CDS: -1.16 Total: -8.16 kcal Total: -72.18 4.31 -67.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813223663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.141 kcal (2) G-P(sol) polarization free energy of solvation -72.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds