Wall clock time and date at job start Tue Mar 31 2020 07:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 5 5 C 1.34777 * 120.00199 * 85.00207 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 C 1.52996 * 109.47159 * 179.72352 * 7 5 4 9 9 C 1.50697 * 109.47491 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99437 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00278 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00194 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00110 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47099 * 59.99852 * 13 11 9 15 15 H 1.48497 * 109.47322 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47165 * 300.00026 * 13 11 9 17 17 C 1.50697 * 109.46811 * 119.99346 * 2 1 3 18 18 C 1.38264 * 119.97745 * 259.99990 * 17 2 1 19 19 C 1.38218 * 120.06316 * 180.02562 * 18 17 2 20 20 C 1.38322 * 120.00911 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 120.02569 * 180.02562 * 20 19 18 22 22 C 1.38545 * 119.95412 * 359.97438 * 20 19 18 23 23 F 1.35103 * 120.03577 * 180.02562 * 22 20 19 24 24 C 1.38201 * 119.97332 * 79.73227 * 17 2 1 25 25 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 27 27 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 28 28 H 0.97000 * 119.99484 * 264.99304 * 4 2 1 29 29 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 30 30 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 31 31 H 1.09004 * 109.47066 * 299.99797 * 8 7 5 32 32 H 1.09000 * 109.47234 * 59.99288 * 8 7 5 33 33 H 0.97004 * 120.00291 * 180.02562 * 12 11 9 34 34 H 1.07999 * 119.96995 * 359.97438 * 18 17 2 35 35 H 1.07996 * 119.99956 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.00570 * 359.97438 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6435 -0.7303 -3.5891 8 6 2.6898 0.2514 -4.7617 9 6 3.1868 -0.4604 -5.9935 10 1 3.4444 -1.5081 -5.9447 11 6 3.3127 0.2259 -7.1826 12 7 2.9986 1.5015 -7.2421 13 14 3.9295 -0.6563 -8.7093 14 1 3.0128 -1.7775 -9.0375 15 1 3.9743 0.2965 -9.8475 16 1 5.2924 -1.1891 -8.4566 17 6 2.0322 -0.7103 1.2305 18 6 2.4586 0.0203 2.3243 19 6 2.9201 -0.6293 3.4536 20 6 2.9563 -2.0116 3.4904 21 17 3.5352 -2.8280 4.9089 22 6 2.5292 -2.7442 2.3948 23 9 2.5634 -4.0943 2.4291 24 6 2.0612 -2.0915 1.2670 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 3.6436 -1.1225 -3.4039 30 1 1.9697 -1.5525 -3.8299 31 1 1.6897 0.6435 -4.9469 32 1 3.3636 1.0736 -4.5208 33 1 3.0868 1.9843 -8.0788 34 1 2.4318 1.0996 2.2958 35 1 3.2524 -0.0577 4.3075 36 1 1.7235 -2.6615 0.4141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327618195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:30 Heat of formation + Delta-G solvation = -80.950535 kcal Electronic energy + Delta-G solvation = -20863.293331 eV Core-core repulsion = 17287.130753 eV Total energy + Delta-G solvation = -3576.162577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 299.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.31330 -40.24773 -38.93062 -37.06760 -35.37363 -33.46936 -31.86443 -31.20932 -30.72977 -29.27691 -25.82690 -24.36402 -23.46752 -22.06872 -20.83074 -19.78912 -18.08283 -17.17675 -16.85115 -16.73734 -16.13719 -15.85250 -15.61255 -14.96302 -14.49004 -14.43553 -14.07411 -13.98521 -13.57359 -13.32087 -13.09318 -12.74490 -12.51107 -12.25434 -12.11609 -11.92790 -11.57519 -11.34458 -11.25444 -11.18074 -10.91892 -10.62942 -9.97549 -9.69544 -9.46922 -9.23865 -9.12888 -9.01057 -8.89273 -8.32998 -5.97240 -4.01774 0.47337 0.62874 1.58811 2.92109 3.17916 3.33854 3.38131 3.39476 3.44970 3.62075 4.10502 4.23281 4.46604 4.60857 4.70425 4.99389 5.11773 5.20637 5.30709 5.37725 5.45064 5.46120 5.56040 5.61132 5.76086 5.99508 6.10364 6.19493 6.20837 6.23449 6.62469 6.85999 7.72278 7.77355 7.84098 8.05412 8.36889 8.69954 9.06439 9.61893 11.13634 Molecular weight = 299.08amu Principal moments of inertia in cm(-1) A = 0.026423 B = 0.002641 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.429594 B =10599.813628 C =11179.748932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.179 3.821 3 H 0.102 0.898 4 N -0.741 5.741 5 C 0.513 3.487 6 O -0.531 6.531 7 C -0.131 4.131 8 C 0.038 3.962 9 C -0.528 4.528 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.050 4.050 18 C -0.106 4.106 19 C -0.078 4.078 20 C -0.078 4.078 21 Cl -0.052 7.052 22 C 0.115 3.885 23 F -0.126 7.126 24 C -0.137 4.137 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.396 0.604 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.024 0.976 32 H 0.023 0.977 33 H 0.262 0.738 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 -7.198 24.770 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.074 3.926 3 H 0.120 0.880 4 N -0.397 5.397 5 C 0.302 3.698 6 O -0.406 6.406 7 C -0.171 4.171 8 C 0.000 4.000 9 C -0.567 4.567 10 H 0.073 0.927 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.051 4.051 18 C -0.125 4.125 19 C -0.097 4.097 20 C -0.106 4.106 21 Cl -0.023 7.023 22 C 0.095 3.905 23 F -0.104 7.104 24 C -0.157 4.157 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.231 0.769 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.448 -6.289 24.705 25.610 hybrid contribution 0.530 -1.316 -0.625 1.551 sum -1.918 -7.606 24.080 25.325 Atomic orbital electron populations 1.22188 0.93889 1.02534 1.03131 1.19764 0.94453 0.97067 0.81270 0.88003 1.46399 1.69774 1.13962 1.09515 1.21596 0.76207 0.87640 0.84370 1.90672 1.48750 1.16342 1.84815 1.21885 1.01024 1.01082 0.93061 1.18892 0.98380 0.93313 0.89401 1.21182 1.44646 0.96342 0.94494 0.92662 1.25018 0.95520 0.94845 0.98958 1.69983 1.48066 1.08194 1.26604 0.86653 0.79361 0.79378 0.82544 1.20243 1.21277 1.20245 1.20035 0.96297 0.92696 0.96057 1.21108 0.98401 1.01047 0.91953 1.20984 0.98238 0.91129 0.99306 1.21028 1.06279 0.93611 0.89687 1.98393 1.87117 1.79073 1.37737 1.17340 1.01546 0.77380 0.94270 1.91559 1.94075 1.28067 1.96691 1.20948 1.02356 0.94790 0.97575 0.92275 0.91611 0.90875 0.76887 0.90185 0.90159 0.95800 0.95814 0.92877 0.83846 0.83684 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.46 37.16 0.35 -1.28 16 2 C 0.18 1.97 2.77 -69.08 -0.19 1.78 16 3 H 0.10 1.25 7.44 -51.93 -0.39 0.87 16 4 N -0.74 -9.52 5.03 -54.93 -0.28 -9.79 16 5 C 0.51 9.27 7.79 -10.98 -0.09 9.18 16 6 O -0.53 -11.76 15.65 5.55 0.09 -11.67 16 7 C -0.13 -2.56 5.64 -27.88 -0.16 -2.72 16 8 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 9 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 10 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 13 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C -0.05 -0.45 4.95 -104.63 -0.52 -0.97 16 18 C -0.11 -0.81 9.67 -39.58 -0.38 -1.19 16 19 C -0.08 -0.57 9.83 -39.56 -0.39 -0.96 16 20 C -0.08 -0.70 6.33 -39.44 -0.25 -0.95 16 21 Cl -0.05 -0.46 28.62 -51.86 -1.48 -1.94 16 22 C 0.11 1.11 7.28 -39.39 -0.29 0.82 16 23 F -0.13 -1.33 16.84 2.25 0.04 -1.30 16 24 C -0.14 -1.22 9.03 -39.52 -0.36 -1.57 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.40 4.08 6.88 -40.82 -0.28 3.79 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.14 0.84 8.04 -52.49 -0.42 0.41 16 35 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.15 1.11 6.93 -52.49 -0.36 0.74 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -33.16 332.16 -8.08 -41.24 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -4.37 Total: -1.02 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.80 Total: -10.55 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.46 Total: -36.29 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.48 Total: -1.94 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.16 -8.08 -41.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327618195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.712 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds