Wall clock time and date at job start Tue Mar 31 2020 07:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 5 5 C 1.34777 * 120.00199 * 85.00207 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 C 1.52996 * 109.47159 * 179.72352 * 7 5 4 9 9 C 1.50697 * 109.47491 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99437 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00278 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00194 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00110 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47099 * 59.99852 * 13 11 9 15 15 H 1.48497 * 109.47322 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47165 * 300.00026 * 13 11 9 17 17 C 1.50697 * 109.46811 * 119.99346 * 2 1 3 18 18 C 1.38264 * 119.97745 * 259.99990 * 17 2 1 19 19 C 1.38218 * 120.06316 * 180.02562 * 18 17 2 20 20 C 1.38322 * 120.00911 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 120.02569 * 180.02562 * 20 19 18 22 22 C 1.38545 * 119.95412 * 359.97438 * 20 19 18 23 23 F 1.35103 * 120.03577 * 180.02562 * 22 20 19 24 24 C 1.38201 * 119.97332 * 79.73227 * 17 2 1 25 25 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 27 27 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 28 28 H 0.97000 * 119.99484 * 264.99304 * 4 2 1 29 29 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 30 30 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 31 31 H 1.09004 * 109.47066 * 299.99797 * 8 7 5 32 32 H 1.09000 * 109.47234 * 59.99288 * 8 7 5 33 33 H 0.97004 * 120.00291 * 180.02562 * 12 11 9 34 34 H 1.07999 * 119.96995 * 359.97438 * 18 17 2 35 35 H 1.07996 * 119.99956 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.00570 * 359.97438 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6435 -0.7303 -3.5891 8 6 2.6898 0.2514 -4.7617 9 6 3.1868 -0.4604 -5.9935 10 1 3.4444 -1.5081 -5.9447 11 6 3.3127 0.2259 -7.1826 12 7 2.9986 1.5015 -7.2421 13 14 3.9295 -0.6563 -8.7093 14 1 3.0128 -1.7775 -9.0375 15 1 3.9743 0.2965 -9.8475 16 1 5.2924 -1.1891 -8.4566 17 6 2.0322 -0.7103 1.2305 18 6 2.4586 0.0203 2.3243 19 6 2.9201 -0.6293 3.4536 20 6 2.9563 -2.0116 3.4904 21 17 3.5352 -2.8280 4.9089 22 6 2.5292 -2.7442 2.3948 23 9 2.5634 -4.0943 2.4291 24 6 2.0612 -2.0915 1.2670 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 3.6436 -1.1225 -3.4039 30 1 1.9697 -1.5525 -3.8299 31 1 1.6897 0.6435 -4.9469 32 1 3.3636 1.0736 -4.5208 33 1 3.0868 1.9843 -8.0788 34 1 2.4318 1.0996 2.2958 35 1 3.2524 -0.0577 4.3075 36 1 1.7235 -2.6615 0.4141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327618195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:30 Heat of formation + Delta-G solvation = -101.166930 kcal Electronic energy + Delta-G solvation = -20864.169979 eV Core-core repulsion = 17287.130753 eV Total energy + Delta-G solvation = -3577.039226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 299.083 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.05538 -41.22449 -40.05941 -37.79960 -36.44031 -35.51822 -33.32519 -32.25173 -31.85592 -30.13879 -27.70768 -25.29111 -24.31414 -23.52674 -21.93857 -21.16734 -19.07718 -18.59222 -17.90134 -17.51667 -17.27306 -16.88629 -16.80528 -16.47754 -16.33830 -15.14801 -15.06655 -14.98880 -14.51525 -14.46114 -14.21864 -14.08728 -13.75540 -13.36606 -13.22509 -13.17257 -12.77824 -12.72580 -12.49515 -12.34744 -12.12603 -11.98295 -11.88487 -11.62146 -11.30562 -10.73662 -10.54939 -10.18104 -10.07466 -9.70859 -8.16848 -6.30561 -0.21507 -0.00591 0.92340 1.42882 1.46914 1.54604 1.72874 2.12730 2.38706 2.46986 2.92650 3.16162 3.37163 3.56990 3.98717 4.01450 4.06035 4.25024 4.32562 4.47499 4.53218 4.58290 4.62052 4.75972 4.84268 4.92724 4.96857 5.10312 5.20517 5.27921 5.49437 5.55814 5.57351 5.66100 5.87389 6.19470 6.56713 6.87958 7.33898 7.39745 8.95450 Molecular weight = 299.08amu Principal moments of inertia in cm(-1) A = 0.026423 B = 0.002641 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.429594 B =10599.813628 C =11179.748932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.181 3.819 3 H 0.089 0.911 4 N -0.718 5.718 5 C 0.517 3.483 6 O -0.581 6.581 7 C -0.122 4.122 8 C 0.043 3.957 9 C -0.544 4.544 10 H 0.075 0.925 11 C -0.006 4.006 12 N -0.937 5.937 13 Si 0.971 3.029 14 H -0.263 1.263 15 H -0.288 1.288 16 H -0.263 1.263 17 C -0.055 4.055 18 C -0.100 4.100 19 C -0.072 4.072 20 C -0.084 4.084 21 Cl -0.054 7.054 22 C 0.098 3.902 23 F -0.135 7.135 24 C -0.136 4.136 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.043 0.957 28 H 0.412 0.588 29 H 0.102 0.898 30 H 0.104 0.896 31 H -0.016 1.016 32 H -0.017 1.017 33 H 0.263 0.737 34 H 0.163 0.837 35 H 0.170 0.830 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.782 -9.001 25.779 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.076 3.924 3 H 0.107 0.893 4 N -0.373 5.373 5 C 0.306 3.694 6 O -0.460 6.460 7 C -0.162 4.162 8 C 0.005 3.995 9 C -0.582 4.582 10 H 0.093 0.907 11 C -0.203 4.203 12 N -0.577 5.577 13 Si 0.795 3.205 14 H -0.187 1.187 15 H -0.214 1.214 16 H -0.188 1.188 17 C -0.055 4.055 18 C -0.118 4.118 19 C -0.090 4.090 20 C -0.112 4.112 21 Cl -0.025 7.025 22 C 0.078 3.922 23 F -0.113 7.113 24 C -0.155 4.155 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.062 0.938 28 H 0.250 0.750 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.002 0.998 32 H 0.002 0.998 33 H 0.071 0.929 34 H 0.181 0.819 35 H 0.187 0.813 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.947 -8.158 25.766 27.096 hybrid contribution 0.361 -0.736 -0.834 1.170 sum -1.585 -8.894 24.932 26.518 Atomic orbital electron populations 1.22147 0.93155 1.03248 1.02784 1.19816 0.95023 0.96487 0.81045 0.89311 1.46103 1.67971 1.14532 1.08649 1.21229 0.75964 0.86864 0.85386 1.90661 1.51234 1.18397 1.85682 1.21653 1.03182 0.99839 0.91481 1.18676 0.94878 0.93686 0.92249 1.21697 1.44099 0.97300 0.95106 0.90737 1.26105 0.95638 0.95569 1.03036 1.70162 1.49607 1.10289 1.27629 0.85410 0.79356 0.78147 0.77561 1.18744 1.21353 1.18790 1.19808 0.97504 0.92687 0.95547 1.21350 0.97093 1.02061 0.91344 1.21239 0.97345 0.90563 0.99901 1.21238 1.06175 0.94290 0.89506 1.98394 1.87114 1.79244 1.37742 1.17485 1.02641 0.77124 0.94927 1.91534 1.94280 1.28750 1.96778 1.21011 1.01969 0.94739 0.97746 0.91004 0.89427 0.93759 0.74997 0.87951 0.87778 0.99775 0.99827 0.92864 0.81938 0.81303 0.82581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.46 71.98 0.68 -2.30 16 2 C 0.18 3.72 2.77 44.24 0.12 3.84 16 3 H 0.09 2.13 7.44 -2.38 -0.02 2.11 16 4 N -0.72 -17.45 5.03 -446.09 -2.24 -19.69 16 5 C 0.52 18.70 7.79 87.66 0.68 19.38 16 6 O -0.58 -26.71 15.65 -3.04 -0.05 -26.76 16 7 C -0.12 -4.71 5.64 29.85 0.17 -4.54 16 8 C 0.04 2.34 4.26 29.85 0.13 2.47 16 9 C -0.54 -30.69 9.11 25.60 0.23 -30.46 16 10 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 11 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 12 N -0.94 -59.07 13.29 21.44 0.28 -58.79 16 13 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 14 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 15 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 17 C -0.05 -0.85 4.95 -19.87 -0.10 -0.95 16 18 C -0.10 -1.25 9.67 22.27 0.22 -1.04 16 19 C -0.07 -0.86 9.83 22.28 0.22 -0.65 16 20 C -0.08 -1.34 6.33 22.36 0.14 -1.20 16 21 Cl -0.05 -0.87 28.62 -2.72 -0.08 -0.94 16 22 C 0.10 1.72 7.28 22.39 0.16 1.88 16 23 F -0.13 -2.70 16.84 44.97 0.76 -1.94 16 24 C -0.14 -2.10 9.03 22.31 0.20 -1.90 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.41 7.48 6.88 -92.71 -0.64 6.84 16 29 H 0.10 3.50 8.14 -2.38 -0.02 3.48 16 30 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 31 H -0.02 -1.00 8.10 -2.38 -0.02 -1.02 16 32 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 33 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 34 H 0.16 1.41 8.04 -2.91 -0.02 1.39 16 35 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.16 1.98 6.93 -2.91 -0.02 1.96 16 Total: -1.00 -74.78 332.16 4.49 -70.29 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 0.47 Total: 7.11 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 3.32 Total: -15.35 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.96 Total: -78.48 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.76 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.76 Total: -1.94 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.94 kcal Total: -74.78 4.49 -70.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327618195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.879 kcal (2) G-P(sol) polarization free energy of solvation -74.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds