Wall clock time and date at job start Tue Mar 31 2020 07:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 119.99891 * 2 1 4 4 H 1.48497 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47539 * 300.00444 * 3 2 1 6 6 H 1.48508 * 109.46914 * 60.00767 * 3 2 1 7 7 C 1.38812 * 120.00534 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00154 * 179.97438 * 7 2 1 9 9 O 1.34856 * 119.99463 * 359.97438 * 7 2 1 10 10 C 1.34742 * 116.99737 * 180.02562 * 9 7 2 11 11 O 1.21523 * 120.00190 * 359.97438 * 10 9 7 12 12 C 1.47637 * 119.99911 * 179.72079 * 10 9 7 13 13 N 1.34625 * 126.03154 * 180.26948 * 12 10 9 14 14 C 1.30862 * 107.28839 * 180.02562 * 13 12 10 15 15 C 1.50698 * 126.19250 * 179.97438 * 14 13 12 16 16 C 1.52999 * 117.49984 * 8.64799 * 15 14 13 17 17 C 1.52997 * 60.00211 * 252.50878 * 16 15 14 18 18 N 1.34913 * 107.60963 * 0.02562 * 14 13 12 19 19 C 1.40124 * 125.76324 * 179.97438 * 18 14 13 20 20 C 1.38851 * 120.06944 * 324.71709 * 19 18 14 21 21 C 1.38115 * 119.93206 * 179.76825 * 20 19 18 22 22 C 1.38286 * 120.06829 * 0.49289 * 21 20 19 23 23 C 1.38281 * 120.13468 * 359.78622 * 22 21 20 24 24 C 1.38116 * 120.07043 * 359.95387 * 23 22 21 25 25 N 1.28862 * 108.46681 * 359.72739 * 18 14 13 26 26 H 0.97005 * 120.00159 * 359.97438 * 1 2 3 27 27 H 1.09004 * 115.54887 * 154.36006 * 15 14 13 28 28 H 1.08992 * 117.49931 * 0.02562 * 16 15 14 29 29 H 1.09000 * 117.49442 * 145.01903 * 16 15 14 30 30 H 1.09002 * 117.50605 * 252.51169 * 17 16 15 31 31 H 1.09001 * 117.51807 * 107.48026 * 17 16 15 32 32 H 1.08005 * 120.03298 * 0.02575 * 20 19 18 33 33 H 1.07997 * 119.96700 * 180.25308 * 21 20 19 34 34 H 1.07994 * 119.93443 * 179.76576 * 22 21 20 35 35 H 1.08004 * 119.96971 * 179.97438 * 23 22 21 36 36 H 1.08001 * 120.03817 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8894 2.3964 1.2127 7 6 2.0082 -1.2021 -0.0005 8 1 3.0882 -1.2020 -0.0010 9 8 1.3340 -2.3700 -0.0005 10 6 2.0679 -3.5000 -0.0005 11 8 3.2814 -3.4364 -0.0010 12 6 1.3977 -4.8154 0.0057 13 7 2.0082 -6.0153 0.0115 14 6 1.0710 -6.9285 0.0152 15 6 1.2825 -8.4206 0.0216 16 6 2.7100 -8.9309 0.2281 17 6 2.0542 -9.0298 -1.1506 18 7 -0.1187 -6.2924 0.0111 19 6 -1.3770 -6.9090 0.0126 20 6 -1.5694 -8.0991 -0.6763 21 6 -2.8096 -8.7069 -0.6690 22 6 -3.8618 -8.1262 0.0151 23 6 -3.6748 -6.9380 0.6973 24 6 -2.4356 -6.3281 0.6982 25 7 0.0976 -5.0221 0.0109 26 1 -0.4850 0.8401 0.0004 27 1 0.4705 -9.0086 0.4495 28 1 3.4961 -8.1875 0.3598 29 1 2.8374 -9.8549 0.7922 30 1 1.7503 -10.0188 -1.4937 31 1 2.4087 -8.3514 -1.9267 32 1 -0.7490 -8.5512 -1.2139 33 1 -2.9589 -9.6347 -1.2012 34 1 -4.8316 -8.6013 0.0163 35 1 -4.4986 -6.4865 1.2304 36 1 -2.2901 -5.4003 1.2316 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251507408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:39 Heat of formation + Delta-G solvation = 80.923987 kcal Electronic energy + Delta-G solvation = -23030.663517 eV Core-core repulsion = 19483.873157 eV Total energy + Delta-G solvation = -3546.790360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.37682 -39.42913 -38.73527 -37.38923 -35.25488 -34.27043 -32.23371 -31.67399 -31.08111 -29.64617 -26.08999 -24.73854 -24.28202 -22.87340 -22.46179 -21.99672 -20.36976 -20.14840 -18.17866 -17.73139 -17.15798 -16.52483 -16.42668 -15.47508 -15.02345 -14.95663 -14.72653 -14.46392 -14.28404 -14.25587 -13.72490 -13.16612 -12.60279 -12.49011 -12.07858 -11.85632 -11.68316 -11.64232 -11.56030 -11.30168 -11.08246 -10.69188 -10.61672 -10.40449 -10.33568 -10.12154 -9.84570 -9.34941 -9.30288 -9.23895 -8.62722 -8.57332 -6.45248 -4.10009 0.63387 1.03248 1.89438 2.30932 2.35885 3.16474 3.17492 3.26178 3.39641 3.54479 3.72934 4.05930 4.08441 4.31159 4.41098 4.59348 4.61250 4.71977 4.77218 4.83649 5.02167 5.05440 5.13968 5.28368 5.35123 5.46034 5.57580 5.68416 5.84471 5.97953 6.03576 6.06243 6.13397 6.18218 6.44127 6.50672 6.82430 6.96770 7.35676 7.88015 8.31772 8.65777 9.01646 9.80196 10.71699 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.016195 B = 0.004175 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.517785 B = 6705.078343 C = 8271.683963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.043 3.957 3 Si 0.948 3.052 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.377 4.377 8 H 0.102 0.898 9 O -0.189 6.189 10 C 0.483 3.517 11 O -0.526 6.526 12 C 0.205 3.795 13 N -0.454 5.454 14 C 0.240 3.760 15 C -0.095 4.095 16 C -0.146 4.146 17 C -0.157 4.157 18 N -0.259 5.259 19 C 0.134 3.866 20 C -0.119 4.119 21 C -0.104 4.104 22 C -0.115 4.115 23 C -0.102 4.102 24 C -0.096 4.096 25 N -0.257 5.257 26 H 0.271 0.729 27 H 0.130 0.870 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 -20.769 -0.215 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.162 4.162 3 Si 0.772 3.228 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.454 4.454 8 H 0.119 0.881 9 O -0.093 6.093 10 C 0.327 3.673 11 O -0.420 6.420 12 C -0.072 4.072 13 N -0.178 5.178 14 C -0.033 4.033 15 C -0.116 4.116 16 C -0.184 4.184 17 C -0.196 4.196 18 N -0.048 5.048 19 C 0.043 3.957 20 C -0.139 4.139 21 C -0.123 4.123 22 C -0.133 4.133 23 C -0.121 4.121 24 C -0.115 4.115 25 N -0.094 5.094 26 H 0.081 0.919 27 H 0.148 0.852 28 H 0.132 0.868 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.620 -19.978 -0.206 21.383 hybrid contribution 0.151 0.694 0.017 0.710 sum -7.469 -19.284 -0.189 20.681 Atomic orbital electron populations 1.70027 1.06128 1.27859 1.44741 1.25433 0.95877 0.98963 0.95950 0.85543 0.79566 0.79539 0.78195 1.18670 1.20022 1.20014 1.21457 0.92711 0.79319 1.51879 0.88073 1.83955 1.38546 1.12619 1.74141 1.18514 0.84712 0.82634 0.81461 1.90686 1.13909 1.86623 1.50735 1.22923 0.85609 0.93420 1.05290 1.71176 1.29544 0.97380 1.19735 1.23907 0.80874 0.96165 1.02374 1.20274 0.98690 0.85198 1.07417 1.23067 0.93773 1.02937 0.98607 1.23121 1.02305 1.01983 0.92167 1.44394 1.05999 1.03824 1.50617 1.17598 0.82504 0.94492 1.01077 1.21138 0.99033 0.94692 0.99062 1.21002 0.91746 1.00164 0.99370 1.21323 0.99269 0.95711 0.97043 1.21130 0.96490 0.95376 0.99091 1.21220 0.91830 1.00569 0.97926 1.74776 1.19205 0.95314 1.20103 0.91883 0.85241 0.86821 0.87742 0.87601 0.87899 0.84463 0.84771 0.85211 0.84704 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.44 13.67 55.49 0.76 -24.69 16 2 C 0.04 1.25 5.50 -17.52 -0.10 1.15 16 3 Si 0.95 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.38 -11.56 9.65 30.94 0.30 -11.26 16 8 H 0.10 3.08 6.86 -52.49 -0.36 2.72 16 9 O -0.19 -5.85 9.75 -21.67 -0.21 -6.06 16 10 C 0.48 13.84 7.91 34.57 0.27 14.11 16 11 O -0.53 -15.78 16.34 -19.28 -0.32 -16.09 16 12 C 0.20 5.08 7.98 -156.27 -1.25 3.83 16 13 N -0.45 -9.84 11.01 -8.50 -0.09 -9.93 16 14 C 0.24 4.15 7.31 -155.23 -1.14 3.01 16 15 C -0.10 -1.10 4.22 -91.77 -0.39 -1.48 16 16 C -0.15 -1.50 10.14 -26.73 -0.27 -1.77 16 17 C -0.16 -1.48 10.21 -26.73 -0.27 -1.75 16 18 N -0.26 -4.70 3.47 -7.99 -0.03 -4.73 16 19 C 0.13 1.90 6.29 -83.61 -0.53 1.38 16 20 C -0.12 -1.24 8.27 -39.40 -0.33 -1.57 16 21 C -0.10 -0.82 10.04 -39.61 -0.40 -1.22 16 22 C -0.12 -0.90 10.04 -39.55 -0.40 -1.30 16 23 C -0.10 -0.99 10.04 -39.61 -0.40 -1.38 16 24 C -0.10 -1.27 9.71 -39.40 -0.38 -1.65 16 25 N -0.26 -5.86 11.78 32.05 0.38 -5.48 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.13 1.16 6.95 -51.93 -0.36 0.80 16 28 H 0.11 1.45 7.91 -51.93 -0.41 1.04 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.14 1.25 6.27 -52.48 -0.33 0.92 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 36 H 0.14 2.07 8.02 -52.49 -0.42 1.65 16 LS Contribution 327.11 15.07 4.93 4.93 Total: -1.00 -37.22 327.11 -8.42 -45.64 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.55 Total: -0.19 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -5.27 Total: 0.10 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 1.01 Total: -44.83 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.53 Total: -22.15 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -37.22 -8.42 -45.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251507408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.568 kcal (2) G-P(sol) polarization free energy of solvation -37.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds