Wall clock time and date at job start Tue Mar 31 2020 08:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38006 * 120.06541 * 2 1 4 4 C 1.38339 * 120.12593 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.86842 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.46662 * 90.00572 * 5 4 3 7 7 C 1.38329 * 120.25287 * 0.25809 * 4 3 2 8 8 C 1.37999 * 120.12988 * 359.48479 * 7 4 3 9 9 C 1.50701 * 120.06724 * 180.27837 * 8 7 4 10 10 C 1.39393 * 119.87040 * 0.51288 * 8 7 4 11 11 C 1.48289 * 120.12571 * 179.76885 * 10 8 7 12 12 C 1.39430 * 119.65122 * 300.26349 * 11 10 8 13 13 C 1.38225 * 119.14909 * 179.75285 * 12 11 10 14 14 C 1.39423 * 118.44995 * 0.51259 * 13 12 11 15 15 O 1.35713 * 120.38242 * 179.74611 * 14 13 12 16 16 C 1.34808 * 117.00443 * 5.81370 * 15 14 13 17 17 H 1.08004 * 119.99631 * 5.34459 * 16 15 14 18 18 C 1.38647 * 120.00485 * 185.34448 * 16 15 14 19 19 N 1.31559 * 120.00065 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00228 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46982 * 60.00048 * 20 18 16 22 22 H 1.48501 * 109.47212 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47264 * 300.00160 * 20 18 16 24 24 C 1.38958 * 119.22761 * 359.72988 * 14 13 12 25 25 N 1.31658 * 120.79359 * 0.02562 * 24 14 13 26 26 H 1.09005 * 109.47035 * 89.33464 * 1 2 3 27 27 H 1.09005 * 109.47335 * 209.32875 * 1 2 3 28 28 H 1.09001 * 109.47379 * 329.33544 * 1 2 3 29 29 H 1.07997 * 119.93321 * 359.97438 * 3 2 1 30 30 H 1.08999 * 109.47572 * 330.00536 * 5 4 3 31 31 H 1.08999 * 109.46873 * 209.99631 * 5 4 3 32 32 H 0.96709 * 113.99857 * 180.02562 * 6 5 4 33 33 H 1.08005 * 119.93165 * 179.72453 * 7 4 3 34 34 H 1.09002 * 109.47256 * 271.33050 * 9 8 7 35 35 H 1.08996 * 109.46928 * 31.33243 * 9 8 7 36 36 H 1.09003 * 109.47332 * 151.32837 * 9 8 7 37 37 H 1.07997 * 120.42301 * 0.02562 * 12 11 10 38 38 H 1.07995 * 120.77052 * 180.26320 * 13 12 11 39 39 H 0.96993 * 120.00331 * 180.02562 * 19 18 16 40 40 H 1.08006 * 119.60437 * 179.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1944 0.0000 4 6 3.5817 1.1958 0.0005 5 6 4.3308 2.5035 -0.0001 6 8 4.5672 2.9175 1.3470 7 6 4.2799 0.0017 -0.0043 8 6 3.5992 -1.1987 0.0010 9 6 4.3613 -2.4988 0.0021 10 6 2.2053 -1.2064 0.0005 11 6 1.4681 -2.4931 0.0010 12 6 1.6555 -3.3959 -1.0449 13 6 0.9670 -4.5943 -1.0313 14 6 0.0987 -4.8496 0.0293 15 8 -0.6008 -6.0114 0.0793 16 6 -0.3240 -6.9337 -0.8641 17 1 0.4842 -6.7675 -1.5610 18 6 -1.0767 -8.0956 -0.9398 19 7 -2.0615 -8.2979 -0.0913 20 14 -0.6935 -9.3733 -2.2476 21 1 0.6990 -9.8587 -2.0723 22 1 -1.6351 -10.5140 -2.1161 23 1 -0.8392 -8.7631 -3.5935 24 6 -0.0417 -3.9006 1.0346 25 7 0.6329 -2.7707 0.9940 26 1 -0.3633 0.0119 -1.0276 27 1 -0.3634 -0.8960 0.5034 28 1 -0.3634 0.8840 0.5241 29 1 1.6583 2.1296 -0.0004 30 1 3.7394 3.2608 -0.5145 31 1 5.2839 2.3759 -0.5134 32 1 5.0460 3.7543 1.4231 33 1 5.3599 0.0089 -0.0084 34 1 4.5624 -2.8030 -1.0252 35 1 5.3040 -2.3670 0.5331 36 1 3.7688 -3.2670 0.4991 37 1 2.3332 -3.1636 -1.8530 38 1 1.0955 -5.3144 -1.8258 39 1 -2.5879 -9.1108 -0.1440 40 1 -0.7129 -4.0918 1.8589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244691394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:38 Heat of formation + Delta-G solvation = -27.906995 kcal Electronic energy + Delta-G solvation = -23101.441728 eV Core-core repulsion = 19653.472446 eV Total energy + Delta-G solvation = -3447.969282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.15930 -39.09857 -37.34797 -36.62527 -33.46692 -32.92605 -32.35677 -31.29550 -29.27817 -27.40071 -26.58034 -26.22315 -25.06116 -22.73679 -22.01944 -20.56831 -20.14130 -18.19717 -17.63034 -17.28043 -16.39274 -16.01880 -15.45767 -14.96703 -14.60978 -14.26786 -14.02539 -13.86361 -13.73579 -13.62099 -13.23197 -12.93979 -12.79815 -12.65313 -12.41156 -12.31650 -12.22192 -11.84171 -11.60576 -11.50123 -11.26744 -11.10427 -10.86191 -10.67628 -10.61889 -10.26014 -9.84342 -9.12069 -8.97344 -8.83675 -8.41484 -8.38608 -7.36255 -6.62979 -4.20793 1.24563 1.54565 1.98095 2.16895 3.03778 3.04779 3.07904 3.67921 3.82127 4.36063 4.47187 4.74740 4.78606 4.90559 4.94227 5.00663 5.13788 5.18327 5.21769 5.38083 5.44392 5.58107 5.69488 5.72822 5.77504 5.81021 5.90179 5.91635 6.00132 6.07925 6.16456 6.27623 6.46986 6.55689 6.62149 6.65983 6.79473 6.90615 6.95702 7.12930 7.16227 7.40302 7.44763 7.79196 8.71630 8.81477 9.45970 10.53426 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.032824 B = 0.003050 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.818198 B = 9178.063936 C = 9618.380524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.061 4.061 3 C -0.109 4.109 4 C -0.098 4.098 5 C 0.121 3.879 6 O -0.567 6.567 7 C -0.108 4.108 8 C -0.073 4.073 9 C -0.113 4.113 10 C 0.001 3.999 11 C 0.046 3.954 12 C -0.097 4.097 13 C -0.202 4.202 14 C 0.108 3.892 15 O -0.161 6.161 16 C -0.395 4.395 17 H 0.093 0.907 18 C 0.043 3.957 19 N -0.853 5.853 20 Si 0.943 3.057 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.268 1.268 24 C 0.029 3.971 25 N -0.427 5.427 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.376 0.624 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.274 0.726 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.988 16.010 -2.964 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.061 4.061 3 C -0.127 4.127 4 C -0.098 4.098 5 C 0.044 3.956 6 O -0.372 6.372 7 C -0.126 4.126 8 C -0.074 4.074 9 C -0.170 4.170 10 C 0.000 4.000 11 C -0.089 4.089 12 C -0.117 4.117 13 C -0.228 4.228 14 C 0.051 3.949 15 O -0.061 6.061 16 C -0.471 4.471 17 H 0.110 0.890 18 C -0.163 4.163 19 N -0.486 5.486 20 Si 0.767 3.233 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.193 1.193 24 C -0.134 4.134 25 N -0.137 5.137 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.137 0.863 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.223 0.777 33 H 0.137 0.863 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.155 0.845 39 H 0.084 0.916 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.185 15.739 -1.985 18.852 hybrid contribution 0.623 -0.739 -1.604 1.873 sum 10.807 15.000 -3.589 18.833 Atomic orbital electron populations 1.20905 0.90971 1.03888 1.01990 1.19930 0.96297 0.91762 0.98141 1.20751 0.93145 0.97349 1.01425 1.19484 0.93598 0.93753 1.03000 1.20953 0.97804 0.93299 0.83576 1.86621 1.80079 1.43900 1.26610 1.20689 0.99204 0.91146 1.01546 1.19893 0.92692 0.95255 0.99586 1.20814 0.99390 0.94599 1.02180 1.18267 0.91461 0.91189 0.99112 1.18946 1.00849 0.94752 0.94399 1.21635 0.98687 0.93372 0.97977 1.21460 1.01682 0.98773 1.00900 1.20546 0.92006 0.88244 0.94124 1.83978 1.53317 1.20036 1.48813 1.21321 1.17139 0.96809 1.11793 0.88968 1.25348 0.95046 0.97743 0.98180 1.70019 1.17650 1.26671 1.34241 0.85741 0.78774 0.79115 0.79644 1.19304 1.20066 1.19330 1.21776 1.02791 0.89746 0.99065 1.67443 1.04540 1.18116 1.23578 0.91820 0.89270 0.92098 0.86336 0.93001 0.93014 0.77732 0.86312 0.91253 0.91908 0.90951 0.86444 0.84528 0.91571 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.63 36.00 0.35 -1.44 16 2 C -0.06 -0.95 5.91 -104.28 -0.62 -1.56 16 3 C -0.11 -1.49 9.34 -39.63 -0.37 -1.86 16 4 C -0.10 -1.27 5.51 -104.55 -0.58 -1.85 16 5 C 0.12 1.16 7.17 36.01 0.26 1.42 16 6 O -0.57 -5.84 13.64 -35.23 -0.48 -6.32 16 7 C -0.11 -1.43 9.34 -39.64 -0.37 -1.80 16 8 C -0.07 -1.10 5.89 -104.28 -0.61 -1.71 16 9 C -0.11 -1.52 8.82 36.01 0.32 -1.20 16 10 C 0.00 0.01 5.52 -104.90 -0.58 -0.57 16 11 C 0.05 0.86 4.43 -82.92 -0.37 0.49 16 12 C -0.10 -1.77 8.36 -39.14 -0.33 -2.10 16 13 C -0.20 -4.19 9.22 -39.14 -0.36 -4.55 16 14 C 0.11 2.51 6.67 -38.87 -0.26 2.25 16 15 O -0.16 -4.36 9.76 0.23 0.00 -4.35 16 16 C -0.39 -10.45 9.46 30.88 0.29 -10.16 16 17 H 0.09 2.24 5.34 -52.48 -0.28 1.96 16 18 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 19 N -0.85 -23.91 13.67 55.48 0.76 -23.15 16 20 Si 0.94 19.51 29.55 -169.99 -5.02 14.48 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 C 0.03 0.62 11.14 -17.36 -0.19 0.43 16 25 N -0.43 -8.67 8.46 -9.61 -0.08 -8.75 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 1.52 5.69 -51.93 -0.30 1.23 16 28 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.38 1.84 9.12 45.56 0.42 2.25 16 33 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.07 1.12 6.70 -51.93 -0.35 0.77 16 37 H 0.12 1.84 7.97 -52.49 -0.42 1.42 16 38 H 0.14 2.75 5.83 -52.49 -0.31 2.45 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.15 3.04 8.06 -52.48 -0.42 2.62 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -31.17 340.07 -7.38 -38.55 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.16 Total: 7.59 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -3.52 Total: -23.18 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.68 Total: -31.90 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.48 Total: -10.68 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.17 -7.38 -38.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244691394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.644 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds