Wall clock time and date at job start Tue Mar 31 2020 08:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38006 * 120.06541 * 2 1 4 4 C 1.38339 * 120.12593 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.86842 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.46662 * 90.00572 * 5 4 3 7 7 C 1.38329 * 120.25287 * 0.25809 * 4 3 2 8 8 C 1.37999 * 120.12988 * 359.48479 * 7 4 3 9 9 C 1.50701 * 120.06724 * 180.27837 * 8 7 4 10 10 C 1.39393 * 119.87040 * 0.51288 * 8 7 4 11 11 C 1.48289 * 120.12571 * 179.76885 * 10 8 7 12 12 C 1.39430 * 119.65122 * 300.26349 * 11 10 8 13 13 C 1.38225 * 119.14909 * 179.75285 * 12 11 10 14 14 C 1.39423 * 118.44995 * 0.51259 * 13 12 11 15 15 O 1.35713 * 120.38242 * 179.74611 * 14 13 12 16 16 C 1.34808 * 117.00443 * 5.81370 * 15 14 13 17 17 H 1.08004 * 119.99631 * 5.34459 * 16 15 14 18 18 C 1.38647 * 120.00485 * 185.34448 * 16 15 14 19 19 N 1.31559 * 120.00065 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00228 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46982 * 60.00048 * 20 18 16 22 22 H 1.48501 * 109.47212 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47264 * 300.00160 * 20 18 16 24 24 C 1.38958 * 119.22761 * 359.72988 * 14 13 12 25 25 N 1.31658 * 120.79359 * 0.02562 * 24 14 13 26 26 H 1.09005 * 109.47035 * 89.33464 * 1 2 3 27 27 H 1.09005 * 109.47335 * 209.32875 * 1 2 3 28 28 H 1.09001 * 109.47379 * 329.33544 * 1 2 3 29 29 H 1.07997 * 119.93321 * 359.97438 * 3 2 1 30 30 H 1.08999 * 109.47572 * 330.00536 * 5 4 3 31 31 H 1.08999 * 109.46873 * 209.99631 * 5 4 3 32 32 H 0.96709 * 113.99857 * 180.02562 * 6 5 4 33 33 H 1.08005 * 119.93165 * 179.72453 * 7 4 3 34 34 H 1.09002 * 109.47256 * 271.33050 * 9 8 7 35 35 H 1.08996 * 109.46928 * 31.33243 * 9 8 7 36 36 H 1.09003 * 109.47332 * 151.32837 * 9 8 7 37 37 H 1.07997 * 120.42301 * 0.02562 * 12 11 10 38 38 H 1.07995 * 120.77052 * 180.26320 * 13 12 11 39 39 H 0.96993 * 120.00331 * 180.02562 * 19 18 16 40 40 H 1.08006 * 119.60437 * 179.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1944 0.0000 4 6 3.5817 1.1958 0.0005 5 6 4.3308 2.5035 -0.0001 6 8 4.5672 2.9175 1.3470 7 6 4.2799 0.0017 -0.0043 8 6 3.5992 -1.1987 0.0010 9 6 4.3613 -2.4988 0.0021 10 6 2.2053 -1.2064 0.0005 11 6 1.4681 -2.4931 0.0010 12 6 1.6555 -3.3959 -1.0449 13 6 0.9670 -4.5943 -1.0313 14 6 0.0987 -4.8496 0.0293 15 8 -0.6008 -6.0114 0.0793 16 6 -0.3240 -6.9337 -0.8641 17 1 0.4842 -6.7675 -1.5610 18 6 -1.0767 -8.0956 -0.9398 19 7 -2.0615 -8.2979 -0.0913 20 14 -0.6935 -9.3733 -2.2476 21 1 0.6990 -9.8587 -2.0723 22 1 -1.6351 -10.5140 -2.1161 23 1 -0.8392 -8.7631 -3.5935 24 6 -0.0417 -3.9006 1.0346 25 7 0.6329 -2.7707 0.9940 26 1 -0.3633 0.0119 -1.0276 27 1 -0.3634 -0.8960 0.5034 28 1 -0.3634 0.8840 0.5241 29 1 1.6583 2.1296 -0.0004 30 1 3.7394 3.2608 -0.5145 31 1 5.2839 2.3759 -0.5134 32 1 5.0460 3.7543 1.4231 33 1 5.3599 0.0089 -0.0084 34 1 4.5624 -2.8030 -1.0252 35 1 5.3040 -2.3670 0.5331 36 1 3.7688 -3.2670 0.4991 37 1 2.3332 -3.1636 -1.8530 38 1 1.0955 -5.3144 -1.8258 39 1 -2.5879 -9.1108 -0.1440 40 1 -0.7129 -4.0918 1.8589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244691394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:38 Heat of formation + Delta-G solvation = -48.138013 kcal Electronic energy + Delta-G solvation = -23102.319011 eV Core-core repulsion = 19653.472446 eV Total energy + Delta-G solvation = -3448.846565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.61814 -40.47331 -38.90543 -37.54061 -34.59961 -34.51280 -33.80634 -32.92343 -30.76448 -28.52299 -27.77832 -27.62483 -26.47681 -24.40205 -23.51731 -21.67228 -21.31133 -19.99967 -19.00932 -18.30666 -17.81224 -17.32003 -16.90844 -16.32643 -15.98991 -15.80498 -15.38573 -15.23349 -14.96789 -14.86063 -14.46643 -14.15825 -14.08878 -13.87519 -13.84409 -13.71373 -13.61030 -13.36163 -12.90702 -12.77556 -12.62686 -12.35445 -12.20224 -11.95711 -11.83198 -11.65366 -10.93078 -10.91302 -10.57501 -10.46647 -9.73723 -9.47359 -9.00144 -8.53231 -6.21496 0.00553 0.34298 0.45840 0.61864 1.35595 1.45899 1.51738 2.13471 2.58097 2.78986 3.09271 3.21498 3.51371 3.61560 3.82893 3.86641 3.91295 4.06555 4.14671 4.26926 4.33240 4.40136 4.48323 4.54021 4.57606 4.66876 4.70505 4.75505 4.77442 4.85363 4.94673 4.97643 5.03268 5.19057 5.27793 5.35731 5.41530 5.49582 5.60524 5.72916 5.81310 5.91256 6.07592 6.89360 6.97492 7.07063 7.62899 8.68144 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.032824 B = 0.003050 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.818198 B = 9178.063936 C = 9618.380524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.073 4.073 3 C -0.113 4.113 4 C -0.096 4.096 5 C 0.121 3.879 6 O -0.591 6.591 7 C -0.110 4.110 8 C -0.077 4.077 9 C -0.112 4.112 10 C -0.039 4.039 11 C 0.073 3.927 12 C -0.093 4.093 13 C -0.195 4.195 14 C 0.081 3.919 15 O -0.211 6.211 16 C -0.418 4.418 17 H 0.106 0.894 18 C -0.016 4.016 19 N -0.912 5.912 20 Si 1.019 2.981 21 H -0.256 1.256 22 H -0.273 1.273 23 H -0.255 1.255 24 C 0.022 3.978 25 N -0.438 5.438 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.399 0.601 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.152 0.848 38 H 0.143 0.857 39 H 0.276 0.724 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.061 18.703 -4.630 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.073 4.073 3 C -0.131 4.131 4 C -0.096 4.096 5 C 0.044 3.956 6 O -0.400 6.400 7 C -0.128 4.128 8 C -0.078 4.078 9 C -0.169 4.169 10 C -0.040 4.040 11 C -0.064 4.064 12 C -0.112 4.112 13 C -0.221 4.221 14 C 0.026 3.974 15 O -0.115 6.115 16 C -0.494 4.494 17 H 0.123 0.877 18 C -0.215 4.215 19 N -0.549 5.549 20 Si 0.837 3.163 21 H -0.180 1.180 22 H -0.197 1.197 23 H -0.180 1.180 24 C -0.139 4.139 25 N -0.147 5.147 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.158 0.842 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.250 0.750 33 H 0.163 0.837 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.170 0.830 38 H 0.160 0.840 39 H 0.085 0.915 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 13.284 18.494 -3.632 23.058 hybrid contribution -0.094 -1.090 -1.009 1.489 sum 13.190 17.403 -4.642 22.325 Atomic orbital electron populations 1.20882 0.91054 1.03429 1.02309 1.20076 0.96510 0.92235 0.98495 1.21015 0.93871 0.97334 1.00909 1.19999 0.93621 0.95471 1.00487 1.21023 0.98873 0.91970 0.83754 1.86541 1.80790 1.45772 1.26946 1.21014 1.00587 0.90539 1.00654 1.20086 0.91931 0.96650 0.99105 1.20836 0.99674 0.93127 1.03251 1.18334 0.92476 0.90349 1.02836 1.19526 0.98497 0.95379 0.92961 1.21949 0.98473 0.92115 0.98695 1.21655 1.00733 0.99668 1.00083 1.20897 0.92815 0.88101 0.95543 1.83961 1.55579 1.21582 1.50374 1.21825 1.17985 0.97465 1.12086 0.87657 1.26613 0.94638 0.99798 1.00489 1.70164 1.19778 1.27825 1.37122 0.84645 0.78965 0.75939 0.76713 1.18026 1.19719 1.17950 1.21879 1.03120 0.89913 0.98977 1.67563 1.05175 1.17439 1.24519 0.91189 0.92092 0.90112 0.84236 0.91030 0.90726 0.75017 0.83681 0.89529 0.89788 0.93707 0.83019 0.83985 0.91514 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.44 9.63 71.23 0.69 -2.75 16 2 C -0.07 -2.13 5.91 -19.64 -0.12 -2.25 16 3 C -0.11 -2.75 9.34 22.24 0.21 -2.54 16 4 C -0.10 -2.10 5.51 -19.82 -0.11 -2.21 16 5 C 0.12 1.75 7.17 71.24 0.51 2.26 16 6 O -0.59 -9.77 13.64 -148.98 -2.03 -11.81 16 7 C -0.11 -2.50 9.34 22.23 0.21 -2.30 16 8 C -0.08 -2.09 5.89 -19.64 -0.12 -2.21 16 9 C -0.11 -2.72 8.82 71.24 0.63 -2.09 16 10 C -0.04 -1.25 5.52 -20.05 -0.11 -1.37 16 11 C 0.07 2.71 4.43 41.98 0.19 2.89 16 12 C -0.09 -3.30 8.36 22.55 0.19 -3.11 16 13 C -0.20 -8.16 9.22 22.55 0.21 -7.95 16 14 C 0.08 3.91 6.67 22.73 0.15 4.06 16 15 O -0.21 -12.15 9.76 -22.11 -0.22 -12.36 16 16 C -0.42 -23.10 9.46 67.92 0.64 -22.46 16 17 H 0.11 5.24 5.34 -2.91 -0.02 5.22 16 18 C -0.02 -0.88 5.49 84.83 0.47 -0.41 16 19 N -0.91 -53.99 13.67 21.61 0.30 -53.70 16 20 Si 1.02 40.72 29.55 68.60 2.03 42.75 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 24 C 0.02 0.97 11.14 84.89 0.95 1.92 16 25 N -0.44 -18.12 8.46 -184.32 -1.56 -19.68 16 26 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.06 2.09 5.69 -2.38 -0.01 2.08 16 28 H 0.08 1.92 8.09 -2.39 -0.02 1.91 16 29 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 31 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 32 H 0.40 2.28 9.12 -74.05 -0.68 1.61 16 33 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 36 H 0.04 1.32 6.70 -2.39 -0.02 1.31 16 37 H 0.15 4.34 7.97 -2.91 -0.02 4.32 16 38 H 0.14 5.73 5.83 -2.91 -0.02 5.72 16 39 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 40 H 0.15 6.59 8.06 -2.91 -0.02 6.57 16 Total: -1.00 -71.56 340.07 3.49 -68.07 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.40 Total: 27.24 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 4.58 Total: -40.51 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.26 Total: -73.38 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -2.25 Total: -24.17 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -71.56 3.49 -68.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244691394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.932 kcal (2) G-P(sol) polarization free energy of solvation -71.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds