Wall clock time and date at job start Tue Mar 31 2020 07:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99780 * 2 1 4 4 C 1.50698 * 120.00160 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46681 * 95.00360 * 4 2 1 6 6 O 1.45206 * 109.46956 * 180.02562 * 5 4 2 7 7 C 1.34868 * 116.99733 * 175.29079 * 6 5 4 8 8 O 1.21595 * 120.00435 * 4.19383 * 7 6 5 9 9 C 1.46717 * 119.99734 * 184.18878 * 7 6 5 10 10 C 1.36209 * 125.44515 * 185.27701 * 9 7 6 11 11 C 1.41666 * 107.74074 * 179.97438 * 10 9 7 12 12 C 1.40045 * 133.33701 * 179.97438 * 11 10 9 13 13 C 1.36564 * 119.83033 * 180.02562 * 12 11 10 14 14 C 1.38868 * 120.60231 * 359.97438 * 13 12 11 15 15 C 1.37841 * 120.63193 * 0.28507 * 14 13 12 16 16 C 1.39091 * 119.82266 * 359.47059 * 15 14 13 17 17 N 1.37820 * 133.15467 * 180.18447 * 16 15 14 18 18 C 1.36874 * 125.62335 * 0.29389 * 17 16 15 19 19 H 1.07997 * 119.99873 * 218.36431 * 18 17 16 20 20 C 1.39025 * 119.99716 * 38.35254 * 18 17 16 21 21 N 1.31337 * 119.99978 * 17.68393 * 20 18 17 22 22 Si 1.86801 * 119.99736 * 197.67856 * 20 18 17 23 23 H 1.48496 * 109.46962 * 60.00432 * 22 20 18 24 24 H 1.48491 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47035 * 300.00271 * 22 20 18 26 26 H 1.08005 * 120.00114 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00418 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46862 * 239.99411 * 3 2 1 29 29 H 1.09000 * 109.47865 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47527 * 119.99951 * 3 2 1 31 31 H 1.08997 * 109.46974 * 335.00551 * 4 2 1 32 32 H 1.08993 * 109.47483 * 215.00586 * 4 2 1 33 33 H 1.08997 * 109.47260 * 60.00367 * 5 4 2 34 34 H 1.09002 * 109.47230 * 300.00177 * 5 4 2 35 35 H 1.08005 * 126.13522 * 0.04027 * 10 9 7 36 36 H 1.08003 * 120.08351 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.69864 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.68397 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.09222 * 179.65437 * 15 14 13 40 40 H 0.97002 * 119.99855 * 184.93257 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6844 -1.4363 6 8 3.1530 -2.9422 -1.4359 7 6 3.4643 -3.4698 -2.6374 8 8 3.2060 -2.8575 -3.6557 9 6 4.1149 -4.7825 -2.7157 10 6 4.5683 -5.3725 -3.8566 11 6 5.1272 -6.6251 -3.5020 12 6 5.7334 -7.6502 -4.2388 13 6 6.1856 -8.7696 -3.6005 14 6 6.0508 -8.9020 -2.2248 15 6 5.4529 -7.9090 -1.4788 16 6 4.9890 -6.7573 -2.1057 17 7 4.3670 -5.6177 -1.6432 18 6 4.0502 -5.3563 -0.3376 19 1 3.1222 -4.8595 -0.0961 20 6 4.9230 -5.7306 0.6778 21 7 6.1757 -6.0083 0.3976 22 14 4.3140 -5.8382 2.4404 23 1 3.2168 -6.8352 2.5250 24 1 5.4312 -6.2547 3.3255 25 1 3.8101 -4.5096 2.8720 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 2.6902 1.3628 -0.8900 29 1 1.3552 2.1337 -0.0005 30 1 2.6901 1.3630 0.8900 31 1 1.4385 -2.0852 0.4351 32 1 2.9741 -1.1986 0.5900 33 1 3.0524 -0.9042 -1.8709 34 1 1.5167 -1.7908 -2.0258 35 1 4.5128 -4.9592 -4.8528 36 1 5.8421 -7.5561 -5.3092 37 1 6.6531 -9.5586 -4.1707 38 1 6.4141 -9.7934 -1.7351 39 1 5.3476 -8.0236 -0.4101 40 1 6.7665 -6.3382 1.0927 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744304175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:19 Heat of formation + Delta-G solvation = -19.524438 kcal Electronic energy + Delta-G solvation = -23720.736504 eV Core-core repulsion = 20273.130717 eV Total energy + Delta-G solvation = -3447.605787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52092 -39.30077 -36.81219 -35.95950 -35.45652 -33.64394 -30.74348 -30.18848 -29.03472 -28.12881 -27.33937 -24.95924 -24.26248 -22.54570 -21.04224 -20.40691 -19.32994 -18.46371 -17.90993 -17.06459 -16.12574 -15.89822 -15.41887 -14.89869 -14.83615 -14.61555 -14.34096 -13.88347 -13.52710 -13.22833 -13.00664 -12.90808 -12.79165 -12.47294 -11.98431 -11.84475 -11.78463 -11.62093 -11.39686 -11.27740 -11.19662 -11.06565 -10.79477 -10.65703 -10.29056 -10.06185 -9.98177 -9.83442 -9.16731 -9.15681 -8.69085 -7.24722 -6.93799 -6.59484 -4.49996 1.65248 2.07352 2.73586 2.90780 2.99462 3.00300 3.02711 3.30375 3.76004 4.08184 4.50028 4.67291 4.79005 4.85597 5.05368 5.20385 5.23265 5.43176 5.49307 5.58708 5.68158 5.79231 5.84456 5.85009 5.93758 5.95009 6.08308 6.16404 6.37847 6.51481 6.52752 6.62601 6.77053 6.83028 6.96351 7.00292 7.06133 7.12061 7.45978 7.55365 7.63081 7.87772 7.98658 8.33306 8.45217 8.78240 9.24313 10.15550 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.005014 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.659358 B = 5583.164240 C = 7143.399557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.121 4.121 3 C -0.121 4.121 4 C -0.087 4.087 5 C 0.072 3.928 6 O -0.333 6.333 7 C 0.546 3.454 8 O -0.528 6.528 9 C -0.021 4.021 10 C -0.161 4.161 11 C -0.131 4.131 12 C -0.085 4.085 13 C -0.158 4.158 14 C -0.148 4.148 15 C -0.051 4.051 16 C 0.092 3.908 17 N -0.237 5.237 18 C -0.341 4.341 19 H 0.116 0.884 20 C 0.054 3.946 21 N -0.816 5.816 22 Si 0.926 3.074 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.264 1.264 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.062 4.889 1.434 7.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.121 4.121 3 C -0.178 4.178 4 C -0.124 4.124 5 C -0.003 4.003 6 O -0.249 6.249 7 C 0.394 3.606 8 O -0.419 6.419 9 C -0.135 4.135 10 C -0.189 4.189 11 C -0.136 4.136 12 C -0.104 4.104 13 C -0.177 4.177 14 C -0.169 4.169 15 C -0.071 4.071 16 C -0.024 4.024 17 N 0.101 4.899 18 C -0.469 4.469 19 H 0.134 0.866 20 C -0.159 4.159 21 N -0.445 5.445 22 Si 0.750 3.250 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.188 1.188 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.151 0.849 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.025 5.268 1.646 7.464 hybrid contribution -0.073 0.152 0.834 0.851 sum -5.098 5.420 2.480 7.843 Atomic orbital electron populations 1.23771 0.95120 1.01972 1.02112 1.21612 0.95364 0.95291 0.99859 1.20907 1.00286 0.94079 1.02499 1.20585 1.01330 0.94597 0.95895 1.22853 0.95947 0.84345 0.97123 1.86852 1.68376 1.37144 1.32570 1.20061 0.75040 0.84543 0.80963 1.90785 1.53262 1.61628 1.36230 1.19061 1.13668 0.90972 0.89760 1.20301 1.06672 0.95655 0.96271 1.17932 1.06416 0.96227 0.92993 1.20053 0.99317 0.93072 0.97950 1.20283 1.04661 0.98115 0.94595 1.20578 1.03486 0.98881 0.93932 1.20105 0.97123 0.90988 0.98872 1.18130 1.03528 0.89088 0.91653 1.40111 1.35915 1.08893 1.04934 1.19915 1.05781 1.42273 0.78890 0.86644 1.25627 0.93760 0.95204 1.01321 1.70005 1.03115 1.34801 1.36587 0.85995 0.79005 0.79869 0.80153 1.18912 1.20166 1.18809 0.88379 0.88291 0.91386 0.92018 0.91379 0.90043 0.89841 0.91629 0.91647 0.84857 0.87659 0.87822 0.87587 0.86816 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 13.90 29.02 0.40 -1.63 16 2 C -0.12 -1.40 5.31 -101.07 -0.54 -1.94 16 3 C -0.12 -1.19 10.12 36.01 0.36 -0.82 16 4 C -0.09 -1.20 5.76 -27.88 -0.16 -1.36 16 5 C 0.07 1.18 5.49 37.16 0.20 1.38 16 6 O -0.33 -7.02 8.03 -40.95 -0.33 -7.35 16 7 C 0.55 12.60 7.90 34.16 0.27 12.87 16 8 O -0.53 -12.32 16.62 -19.34 -0.32 -12.64 16 9 C -0.02 -0.53 6.76 -82.28 -0.56 -1.09 16 10 C -0.16 -3.78 10.55 -39.00 -0.41 -4.19 16 11 C -0.13 -3.09 6.16 -106.89 -0.66 -3.75 16 12 C -0.08 -1.73 10.06 -39.51 -0.40 -2.13 16 13 C -0.16 -3.00 9.97 -39.95 -0.40 -3.40 16 14 C -0.15 -2.98 10.02 -39.49 -0.40 -3.38 16 15 C -0.05 -1.20 8.55 -39.41 -0.34 -1.53 16 16 C 0.09 2.32 6.08 -83.84 -0.51 1.81 16 17 N -0.24 -6.13 2.83 -56.10 -0.16 -6.29 16 18 C -0.34 -8.58 8.73 -15.01 -0.13 -8.71 16 19 H 0.12 2.81 6.87 -52.49 -0.36 2.45 16 20 C 0.05 1.30 4.43 -17.47 -0.08 1.23 16 21 N -0.82 -20.67 10.89 55.50 0.60 -20.07 16 22 Si 0.93 18.28 29.59 -169.99 -5.03 13.25 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 26 H 0.10 0.87 7.83 -52.48 -0.41 0.46 16 27 H 0.10 1.02 7.99 -52.49 -0.42 0.60 16 28 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.06 0.51 7.78 -51.93 -0.40 0.11 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.12 7.99 -51.93 -0.41 0.71 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.13 2.82 8.06 -52.48 -0.42 2.40 16 36 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.11 2.68 6.44 -52.48 -0.34 2.34 16 40 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -28.47 345.19 -8.65 -37.12 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.29 Total: 7.41 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -3.33 Total: -16.65 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.45 Total: -26.35 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.65 Total: -19.98 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.47 -8.65 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744304175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.598 kcal (2) G-P(sol) polarization free energy of solvation -28.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds