Wall clock time and date at job start Tue Mar 31 2020 07:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99780 * 2 1 4 4 C 1.50698 * 120.00160 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46681 * 95.00360 * 4 2 1 6 6 O 1.45206 * 109.46956 * 180.02562 * 5 4 2 7 7 C 1.34868 * 116.99733 * 175.29079 * 6 5 4 8 8 O 1.21595 * 120.00435 * 4.19383 * 7 6 5 9 9 C 1.46717 * 119.99734 * 184.18878 * 7 6 5 10 10 C 1.36209 * 125.44515 * 185.27701 * 9 7 6 11 11 C 1.41666 * 107.74074 * 179.97438 * 10 9 7 12 12 C 1.40045 * 133.33701 * 179.97438 * 11 10 9 13 13 C 1.36564 * 119.83033 * 180.02562 * 12 11 10 14 14 C 1.38868 * 120.60231 * 359.97438 * 13 12 11 15 15 C 1.37841 * 120.63193 * 0.28507 * 14 13 12 16 16 C 1.39091 * 119.82266 * 359.47059 * 15 14 13 17 17 N 1.37820 * 133.15467 * 180.18447 * 16 15 14 18 18 C 1.36874 * 125.62335 * 0.29389 * 17 16 15 19 19 H 1.07997 * 119.99873 * 218.36431 * 18 17 16 20 20 C 1.39025 * 119.99716 * 38.35254 * 18 17 16 21 21 N 1.31337 * 119.99978 * 17.68393 * 20 18 17 22 22 Si 1.86801 * 119.99736 * 197.67856 * 20 18 17 23 23 H 1.48496 * 109.46962 * 60.00432 * 22 20 18 24 24 H 1.48491 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47035 * 300.00271 * 22 20 18 26 26 H 1.08005 * 120.00114 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00418 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46862 * 239.99411 * 3 2 1 29 29 H 1.09000 * 109.47865 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47527 * 119.99951 * 3 2 1 31 31 H 1.08997 * 109.46974 * 335.00551 * 4 2 1 32 32 H 1.08993 * 109.47483 * 215.00586 * 4 2 1 33 33 H 1.08997 * 109.47260 * 60.00367 * 5 4 2 34 34 H 1.09002 * 109.47230 * 300.00177 * 5 4 2 35 35 H 1.08005 * 126.13522 * 0.04027 * 10 9 7 36 36 H 1.08003 * 120.08351 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.69864 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.68397 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.09222 * 179.65437 * 15 14 13 40 40 H 0.97002 * 119.99855 * 184.93257 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6844 -1.4363 6 8 3.1530 -2.9422 -1.4359 7 6 3.4643 -3.4698 -2.6374 8 8 3.2060 -2.8575 -3.6557 9 6 4.1149 -4.7825 -2.7157 10 6 4.5683 -5.3725 -3.8566 11 6 5.1272 -6.6251 -3.5020 12 6 5.7334 -7.6502 -4.2388 13 6 6.1856 -8.7696 -3.6005 14 6 6.0508 -8.9020 -2.2248 15 6 5.4529 -7.9090 -1.4788 16 6 4.9890 -6.7573 -2.1057 17 7 4.3670 -5.6177 -1.6432 18 6 4.0502 -5.3563 -0.3376 19 1 3.1222 -4.8595 -0.0961 20 6 4.9230 -5.7306 0.6778 21 7 6.1757 -6.0083 0.3976 22 14 4.3140 -5.8382 2.4404 23 1 3.2168 -6.8352 2.5250 24 1 5.4312 -6.2547 3.3255 25 1 3.8101 -4.5096 2.8720 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 2.6902 1.3628 -0.8900 29 1 1.3552 2.1337 -0.0005 30 1 2.6901 1.3630 0.8900 31 1 1.4385 -2.0852 0.4351 32 1 2.9741 -1.1986 0.5900 33 1 3.0524 -0.9042 -1.8709 34 1 1.5167 -1.7908 -2.0258 35 1 4.5128 -4.9592 -4.8528 36 1 5.8421 -7.5561 -5.3092 37 1 6.6531 -9.5586 -4.1707 38 1 6.4141 -9.7934 -1.7351 39 1 5.3476 -8.0236 -0.4101 40 1 6.7665 -6.3382 1.0927 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744304175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:19 Heat of formation + Delta-G solvation = -31.353819 kcal Electronic energy + Delta-G solvation = -23721.249464 eV Core-core repulsion = 20273.130717 eV Total energy + Delta-G solvation = -3448.118748 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.27640 -40.99357 -38.10390 -37.62449 -36.84475 -35.44340 -32.51629 -31.45566 -30.68737 -29.80382 -28.14400 -26.78539 -25.79140 -23.96560 -22.76958 -22.08638 -21.07326 -19.88626 -19.26841 -18.69779 -17.74762 -17.54364 -17.13932 -16.49033 -16.37176 -15.87266 -15.53713 -15.30773 -15.06688 -14.74659 -14.63906 -14.36181 -14.15481 -13.88425 -13.62525 -13.52557 -13.08067 -12.90742 -12.79868 -12.66309 -12.54808 -12.37064 -12.21700 -12.13012 -11.97167 -11.71038 -11.52941 -11.49764 -10.93793 -10.45370 -10.04867 -9.01112 -8.72213 -8.35401 -6.38382 -0.09426 1.08046 1.13546 1.16736 1.35989 1.42590 1.48280 1.77756 2.10852 2.28640 2.75847 2.87307 3.33941 3.76810 3.78236 3.95854 4.08634 4.16083 4.19215 4.31165 4.42551 4.49457 4.62021 4.71086 4.75850 4.79560 4.81412 4.89720 4.97229 4.98568 5.11015 5.15644 5.17964 5.31291 5.32571 5.43345 5.65471 5.72527 5.88750 5.89652 5.94524 6.14817 6.27986 6.55875 6.69444 6.97952 7.42417 8.37153 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.005014 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.659358 B = 5583.164240 C = 7143.399557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.138 4.138 3 C -0.120 4.120 4 C -0.080 4.080 5 C 0.067 3.933 6 O -0.345 6.345 7 C 0.546 3.454 8 O -0.539 6.539 9 C -0.054 4.054 10 C -0.164 4.164 11 C -0.153 4.153 12 C -0.087 4.087 13 C -0.151 4.151 14 C -0.132 4.132 15 C -0.086 4.086 16 C 0.066 3.934 17 N -0.257 5.257 18 C -0.366 4.366 19 H 0.112 0.888 20 C 0.020 3.980 21 N -0.850 5.850 22 Si 0.991 3.009 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.257 1.257 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.150 0.850 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 4.345 1.428 6.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.138 4.138 3 C -0.176 4.176 4 C -0.117 4.117 5 C -0.006 4.006 6 O -0.261 6.261 7 C 0.395 3.605 8 O -0.431 6.431 9 C -0.166 4.166 10 C -0.192 4.192 11 C -0.157 4.157 12 C -0.106 4.106 13 C -0.169 4.169 14 C -0.153 4.153 15 C -0.105 4.105 16 C -0.050 4.050 17 N 0.080 4.920 18 C -0.494 4.494 19 H 0.129 0.871 20 C -0.190 4.190 21 N -0.480 5.480 22 Si 0.811 3.189 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.181 1.181 26 H 0.139 0.861 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.118 0.882 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.136 4.733 1.639 7.174 hybrid contribution -0.031 0.257 0.722 0.767 sum -5.167 4.990 2.362 7.561 Atomic orbital electron populations 1.23995 0.94782 1.03044 0.99917 1.21601 0.95764 0.94722 1.01730 1.20923 1.00587 0.93684 1.02442 1.20553 1.01369 0.96014 0.93803 1.23191 0.95603 0.82554 0.99262 1.86833 1.68602 1.39005 1.31644 1.19959 0.74875 0.84295 0.81391 1.90748 1.53922 1.61901 1.36536 1.19531 1.14739 0.92032 0.90339 1.20608 1.06083 0.95791 0.96683 1.18353 1.07334 0.97173 0.92869 1.20496 0.98109 0.92372 0.99600 1.20784 1.03279 0.98600 0.94279 1.21060 1.00843 0.98677 0.94690 1.20208 0.99691 0.91929 0.98714 1.18656 1.03908 0.89587 0.92843 1.40307 1.36950 1.09511 1.05209 1.20122 1.06156 1.43572 0.79501 0.87091 1.26479 0.93547 0.94187 1.04806 1.70084 1.04183 1.35799 1.37885 0.85042 0.78643 0.80098 0.75144 1.18395 1.19402 1.18101 0.86139 0.88402 0.91857 0.90151 0.91080 0.90377 0.90453 0.91230 0.91294 0.83193 0.84392 0.83276 0.84282 0.88186 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 13.90 67.78 0.94 -2.54 16 2 C -0.14 -3.05 5.31 -16.48 -0.09 -3.14 16 3 C -0.12 -2.19 10.12 71.24 0.72 -1.47 16 4 C -0.08 -2.23 5.76 29.85 0.17 -2.05 16 5 C 0.07 2.27 5.49 71.98 0.39 2.66 16 6 O -0.34 -15.13 8.03 -57.81 -0.46 -15.59 16 7 C 0.55 26.19 7.90 70.04 0.55 26.75 16 8 O -0.54 -25.76 16.62 19.52 0.32 -25.43 16 9 C -0.05 -2.77 6.76 39.87 0.27 -2.50 16 10 C -0.16 -7.82 10.55 22.64 0.24 -7.58 16 11 C -0.15 -7.22 6.16 -21.33 -0.13 -7.35 16 12 C -0.09 -3.33 10.06 22.32 0.22 -3.11 16 13 C -0.15 -5.21 9.97 22.03 0.22 -4.99 16 14 C -0.13 -5.04 10.02 22.33 0.22 -4.81 16 15 C -0.09 -4.02 8.55 22.38 0.19 -3.83 16 16 C 0.07 3.38 6.08 39.07 0.24 3.62 16 17 N -0.26 -13.84 2.83 -331.41 -0.94 -14.78 16 18 C -0.37 -19.23 8.73 84.10 0.73 -18.50 16 19 H 0.11 5.69 6.87 -2.91 -0.02 5.67 16 20 C 0.02 0.97 4.43 84.96 0.38 1.35 16 21 N -0.85 -44.25 10.89 21.67 0.24 -44.02 16 22 Si 0.99 37.99 29.59 68.60 2.03 40.02 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 24 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 25 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 26 H 0.12 1.79 7.83 -2.91 -0.02 1.77 16 27 H 0.10 1.89 7.99 -2.91 -0.02 1.87 16 28 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.08 1.15 7.78 -2.39 -0.02 1.14 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 2.18 7.99 -2.39 -0.02 2.17 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 2.24 8.09 -2.39 -0.02 2.22 16 35 H 0.15 6.39 8.06 -2.91 -0.02 6.36 16 36 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 38 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 39 H 0.10 4.86 6.44 -2.91 -0.02 4.84 16 40 H 0.29 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -63.53 345.19 7.51 -56.03 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 1.04 Total: 31.27 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 5.28 Total: -27.49 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.70 Total: -58.80 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.14 Total: -41.02 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -63.53 7.51 -56.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744304175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.675 kcal (2) G-P(sol) polarization free energy of solvation -63.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds